Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021868.1

Orthogroup ID

OG0002996

Physical Location & Seq

Genomic Coordinates Reverse (-)

8783 .. 9472

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021868.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ctgcttggcaactcatcccacattcccactcttgatattctactcacaaggggacgtgattcagtatgccgggtttgggatattcgtacccaaacgcatgttcatgcattcttggggcacgacagcacagtttgctcggttttcactagaccaatcgatccccaagttgtcactggctctcacgacgcaaccatcaagttctgggaccttagaggtggaaaagcagtgtcaactctcacacaccataagaaatccgtgcgtgcaatggcgccacatcctaaggatcagcattgttttacttctgtgtcagtagacaacattaagaagttcggatcgttcaaccttccgagaggggaatttttacacgatatgctagctcagcagaacaccatagttaacacaatggcggtcaatggtgatggagttatggccaccggagatgacagtgggagtttgtggttttgggattgggagagtggccataattatcagcaatcccaaacaactgtacagccatgttctctgaatagtgaagctggtatttctgccctttcttatgatgtcactggcagaaggctagttacttgtggagttgacaagacgatcaaaatgtggaaacaagacaaaaacgccacaccagaaactcatcctctcaatttcagtccgcctaaagatatccggcacctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

229

Amino Acids

25.47

Weight (kDa)

7.88

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16650 AT4G15900
fragaria_vesca	FvH4_4g18400 FvH4_4g23450
malus_domestica	MD00G1128100.v1.1 MD00G1184900.v1.1 MD05G1262800.v1.1 MD16G1081900.v1.1 MD16G1167100.v1.1
prunus_persica	Prupe.1G134100_v2.0.a1 Prupe.1G134100_v2.0.a1 Prupe.6G318200_v2.0.a1
pyrus_communis	pycom06g06670 pycom13g14280 pycom16g14110
rosa_chinensis	RchiOBHm_Chr4g0422851 RchiOBHm_Chr4g0429811 RchiOBHm_Chr4g0429821
rosa_laevigata	RLG00000007041 RLG00000007600
rosa_multiflora	Rmu_co8144486.1_g000001 Rmu_co8520863.1_g000001 Rmu_sc0000830.1_g000042 Rmu_sc0006762.1_g000001 Rmu_sc0021868.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364710 Rroxscaffold_5G00371580
rosa_rugosa	Rorug04G0181800 Rorug04G0238500
rosa_samantha	Rh4AG242200 Rh4BG245800 Rh4BG300800 Rh4BG300900 Rh4CG256100 Rh4DG240800 Rh4DG297900
rosa_wichuraiana	Rw4G020860 Rw4G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	268, 681
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	407, 665
AclWI	GGATC	3 cut(s)	152, 291, 340
AcoI	YGGCCR	2 cut(s)	429, 478
AcsI	RAATTY	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	2 cut(s)	88, 510
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	2 cut(s)	377, 536
AluI	AGCT	2 cut(s)	377, 536
AlwI	GGATC	3 cut(s)	152, 291, 340
AoxI	GGCC	2 cut(s)	429, 478
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	2 cut(s)	431, 480
BanI	GGYRCC	2 cut(s)	268, 681
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BccI	CCATC	2 cut(s)	200, 413
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	4 cut(s)	147, 374, 578, 688
BfoI	RGCGCY	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	206, 270, 683
BmrFI	CCNGG	1 cut(s)	71
BmtI	GCTAGC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	178, 571
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	3 cut(s)	14, 274, 646
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	178, 571
BseSI	GKGCMC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	431, 480
BshNI	GGYRCC	2 cut(s)	268, 681
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	70, 435, 679
BslFI	GGGAC	2 cut(s)	66, 218
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	66, 218
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	431, 480
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	157, 283, 332, 603
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	407, 665
BspANI	GGCC	2 cut(s)	431, 480
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	206, 270, 683
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	3 cut(s)	152, 291, 340
BspT107I	GGYRCC	2 cut(s)	268, 681
BsrDI	GCAATG	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	178, 571
BssMI	GATC	4 cut(s)	157, 283, 332, 603
BssNI	GRCGYC	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	130, 446, 508
BstACI	GRCGYC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	261, 375
BstDEI	CTNAG	3 cut(s)	209, 279, 378
BstF5I	GGATG	3 cut(s)	14, 274, 646
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	160, 286, 335, 606
BstMBI	GATC	4 cut(s)	157, 283, 332, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 379
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	120
Bsu15I	ATCGAT	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	431, 480
BsuTUI	ATCGAT	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	14, 274, 646
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	4 cut(s)	171, 231, 451, 564
Cac8I	GCNNGC	2 cut(s)	261, 375
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	87, 509
CviAII	CATG	3 cut(s)	98, 104, 516
CviJI	RGCY	7 cut(s)	177, 377, 431, 480, 514, 536, 577
CviKI_1	RGCY	7 cut(s)	177, 377, 431, 480, 514, 536, 577
CviQI	GTAC	2 cut(s)	87, 509
DdeI	CTNAG	3 cut(s)	209, 279, 378
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	4 cut(s)	159, 285, 334, 605
DpnII	GATC	4 cut(s)	157, 283, 332, 603
EaeI	YGGCCR	2 cut(s)	429, 478
EciI	GGCGGA	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
FaeI	CATG	3 cut(s)	101, 107, 519
FaqI	GGGAC	2 cut(s)	66, 218
FatI	CATG	3 cut(s)	97, 103, 515
FblI	GTMKAC	1 cut(s)	312
FokI	GGATG	2 cut(s)	261, 633
FspBI	CTAG	4 cut(s)	147, 374, 578, 688
GlaI	GCGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	431, 480
HapII	CCGG	3 cut(s)	70, 435, 679
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	101, 107, 519
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	3 cut(s)	231, 397, 595
HindII	GTYRAC	3 cut(s)	231, 397, 595
HinfI	GANTC	1 cut(s)	59
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	3 cut(s)	70, 435, 679
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	4 cut(s)	231, 313, 397, 595
Hpy188I	TCNGA	3 cut(s)	332, 348, 525
Hpy188III	TCNNGA	2 cut(s)	32, 182
Hpy8I	GTNNAC	4 cut(s)	231, 313, 397, 595
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	353, 567
HpyCH4III	ACNGT	3 cut(s)	130, 446, 508
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	107, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 379
HpyF3I	CTNAG	3 cut(s)	209, 279, 378
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	101, 107, 519
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	157, 283, 332, 603
LpnPI	CCDG	7 cut(s)	83, 159, 187, 448, 522, 552, 651
MaeI	CTAG	4 cut(s)	147, 374, 578, 688
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	3 cut(s)	169, 562, 580
MalI	GATC	4 cut(s)	159, 285, 334, 605
MboI	GATC	4 cut(s)	157, 283, 332, 603
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	2 cut(s)	431, 480
MluCI	AATT	3 cut(s)	356, 484, 655
MluNI	TGGCCA	2 cut(s)	431, 480
Mly113I	GGCGCC	1 cut(s)	269
MnlI	CCTC	3 cut(s)	206, 344, 660
Mox20I	TGGCCA	2 cut(s)	431, 480
Mph1103I	ATGCAT	1 cut(s)	109
MscI	TGGCCA	2 cut(s)	431, 480
MseI	TTAA	2 cut(s)	321, 396
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	431, 480
MspI	CCGG	3 cut(s)	70, 435, 679
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	132, 379
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	4 cut(s)	157, 283, 332, 603
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	101, 107, 519
NlaIV	GGNNCC	3 cut(s)	206, 270, 683
NmuCI	GTSAC	2 cut(s)	169, 562
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	101
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	206, 270, 683
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	88, 510
RsaNI	GTAC	2 cut(s)	87, 509
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	321, 396
Sau3AI	GATC	4 cut(s)	157, 283, 332, 603
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	58, 210, 217, 345, 379, 538, 687
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	356, 484, 655
SsiI	CCGC	2 cut(s)	407, 665
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	4 cut(s)	147, 374, 578, 688
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	130, 446, 508
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	356, 484, 655
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	321, 396
Tru9I	TTAA	2 cut(s)	321, 396
TscAI	CASTG	4 cut(s)	178, 231, 451, 571
TseFI	GTSAC	2 cut(s)	169, 562
Tsp45I	GTSAC	2 cut(s)	169, 562
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	178, 231, 451, 571
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	4 cut(s)	147, 374, 578, 688
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.