MD16G1081900.v1.1

Protein pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0002996
Physical Location & Seq
Reverse (-)
5744251 .. 5745660
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1081900.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGACTCGTCACTTGGAAATTTGATTTCTAAATCTCTAAAGAGACCTGGCGATTTATTTTTCCCCACCCATGGCAGCGAACTGGCCCCTCCTGACCTGCAGACTAAAAAAATTCGCATGACTTACAAGGCAAGCATGGAGTACGGTGGACTTAAACCGACGGCTGATCGACAAAACCCCGCTGCCGACCGCGATGAATCGTCCAACGCTCTTCCCCTTGATCCAAATCCTACTACTGCCCAAGGAGATCAAAACGCTGATTTGTTTTTGAGTCCATCTACACCCAACAAGGCCAAGGCGCCGATTAATATTGCTGATGGCACTTCGGTTTTTTCTGCTCCTGGTTCGTCCCGTTCCCGCGATCAGAGGTGTTCAACAACGTTGGATTTAGCCCGAAATTGGCCACGTACCGTTTGGCATAGCCCGTGGAAGATTTACAGGGTCATCAGTGGCCACCTAGGATGGGTTCGCTCTGTTGCTTTTGATCCAAGCAACAGATGGTTCTGTACAGGATCTGCAGACCGGACAATCAAAATATGGGACGTAGCAAGCGGGACGCTACAACTTTCTCTTACCGGACACATTGGGCAAATACGAAGTCTTGCCGTTAGCACCAGGCAACCCTATTTGTTCTCGGCTGGCGATGACAAACAAGTCAAATGCTGGGACCTTGAACAGAACAAGGTTATCCGTTCATATCATGGTCATCTTAGTGGCGTCTACAGCATGGCTCTCCATCCGACTCTTGATGTTTTAGTCACCGGGGGACGGGATAGCGCATGCCGTGTTTGGGATGTTCGTCTCAAGAATGTGCAAGTTCATGCATTGACTGGACACGAAGATGCAGTTTGCTCCCTTCTCACTCTCCCAACGGATCCACAAGTTATTAGCGGGTCTCACGATACAACTGTCAAGCTGTGGGACCTTAGAAAGGGAAAAACCTTTTCAACTTTAACGCATCATAAGAAATCGGTGCGGGCAATGACACATCATCCTAAGCTAGATCGGGGTAATTGCTTCGCATCGGCTTCAACAAACACCATCAAAAAGTTCAACCTTCCGAGGGGGGAGTTTTTGCACAACATGCTCTCCCAACAGAAGTCCATTATCAACGCGATGGCCGTCAATGAAGATGGAGTTATGGCTACAGGAGGCGACAACGGTAGCTTGTGGTTTTGGGATTGGAAGAGCGGCCACAACTTCCAGCAATCCCAAACAATTGTACAACCGGGCTCGCTGGAGAGTGAAGCTGGGATTTATGCTCTTTGCTACGATGTCACTGGCACAAGGCTGGTTACTTGTGAAGCTGACAAGACAATCAAGATGTGGAAACAAGACGAAAAGGCCACCCCGGAAACTCATCCTCTAAATTTTAGGCCTCCTAATCTTAGAGACGTTGGGCGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

470

Amino Acids

51.99

Weight (kDa)

9.14

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 140 - 268 4e-09 WDR41
Beta-prop_THOC3 PF25174 143 - 252 1.5e-18 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 143 - 265 3.8e-20 WDR3 second beta-propeller domain
WD40 PF00400 144 - 181 3e-11 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 144 - 187 2.6e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 144 - 286 1.8e-18 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 147 - 266 9.6e-29 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 147 - 243 7.1e-08 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 149 - 327 7.6e-41 WDR5 beta-propeller domain
WDR55 PF24796 156 - 313 2.3e-15 WDR55
WD40_WDHD1_1st PF24817 156 - 232 1.1e-11 WDHD1 first WD40 domain
WD40_Prp19 PF24814 157 - 232 4.4e-13 Prp19 WD40 domain
Beta-prop_ACSF4 PF13570 158 - 400 9.3e-06 Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 158 - 228 1.1e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 186 - 223 3e-06 WD domain, G-beta repeat
EIF3I PF24805 189 - 267 8.5e-07 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 192 - 318 2.3e-11 WDR36/Utp21 second beta-propeller domain
WD40_RFWD3 PF23419 194 - 292 9.2e-07 E3 ubiquitin-protein ligase RFWD3 WD40 domain
WD40_CDC20-Fz PF24807 198 - 443 3.1e-27 CDC20/Fizzy WD40 domain
Beta-prop_SCAP PF24017 214 - 311 6.2e-07 SCAP Beta-propeller
WD40 PF00400 228 - 265 8.4e-08 WD domain, G-beta repeat
Beta-prop_DCAF12 PF23760 228 - 343 8.6e-06 DDB1- and CUL4-associated factor 12 beta propeller
Beta-prop_WDR36-Utp21_1st PF25171 231 - 445 3.6e-13 WDR36/Utp21 first beta-propeller
Beta-prop_EML PF23409 231 - 452 3.4e-16 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd PF25047 234 - 329 3.8e-10 TEP-1 second beta-propeller
WD40_Prp19 PF24814 238 - 443 5.6e-25 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 239 - 449 4e-23 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 240 - 404 5.5e-14 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 240 - 406 6.8e-10 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 252 - 331 1.4e-08 WDR55
Beta-prop_WDR3_1st PF25173 263 - 333 2.6e-13 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 264 - 357 7.2e-08 G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1 PF24105 272 - 346 1.5e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 272 - 308 2.1e-07 WD domain, G-beta repeat
EIF3I PF24805 275 - 444 6.8e-07 EIF3I
WDR55 PF24796 315 - 446 7.6e-08 WDR55
Beta-prop_WDR5 PF25175 321 - 448 4.2e-07 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 339 - 450 5.4e-06 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 340 - 444 5.5e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 1191
AccI GTMKAC 1 cut(s) 720
AccII CGCG 3 cut(s) 192, 360, 1115
AciI CCGC 8 cut(s) 180, 190, 358, 552, 891, 976, 1191, 1402
AclI AACGTT 1 cut(s) 380
AclWI GGATC 5 cut(s) 215, 479, 520, 869, 882
AcoI YGGCCR 4 cut(s) 401, 451, 1119, 1192
AcsI RAATTY 3 cut(s) 19, 111, 1369
AcyI GRCGYC 2 cut(s) 299, 717
AfaI GTAC 4 cut(s) 143, 409, 508, 1224
AfiI CCNNNNNNNGG 7 cut(s) 71, 399, 463, 768, 790, 931, 1063
AgsI TTSAA 5 cut(s) 375, 674, 948, 1032, 1054
AjnI CCWGG 3 cut(s) 46, 340, 614
AluBI AGCT 5 cut(s) 916, 1000, 1167, 1250, 1307
AluI AGCT 5 cut(s) 916, 1000, 1167, 1250, 1307
Alw26I GTCTC 4 cut(s) 37, 806, 900, 1386
AlwI GGATC 5 cut(s) 215, 479, 520, 869, 882
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 8 cut(s) 84, 291, 401, 451, 1119, 1192, 1344, 1376
ApeKI GCWGC 2 cut(s) 75, 182
ApoI RAATTY 3 cut(s) 19, 111, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
AseI ATTAAT 1 cut(s) 306
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 2 cut(s) 301, 779
AspS9I GGNCC 3 cut(s) 85, 667, 922
AsuC2I CCSGG 3 cut(s) 763, 1230, 1352
AsuHPI GGTGA 1 cut(s) 751
AvaII GGWCC 2 cut(s) 667, 922
AvrII CCTAGG 1 cut(s) 457
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BalI TGGCCA 2 cut(s) 403, 453
BamHI GGATCC 1 cut(s) 874
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 1235
BbvI GCAGC 2 cut(s) 87, 169
BccI CCATC 8 cut(s) 283, 311, 456, 492, 744, 1049, 1111, 1127
BceAI ACGGC 4 cut(s) 177, 590, 768, 1106
BciT130I CCWGG 3 cut(s) 48, 342, 616
BcnI CCSGG 3 cut(s) 763, 1230, 1352
BcoDI GTCTC 4 cut(s) 37, 806, 900, 1386
BfaI CTAG 3 cut(s) 458, 1001, 1408
BfmI CTRYAG 4 cut(s) 98, 516, 721, 1146
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 3 cut(s) 76, 183, 1192
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 3 cut(s) 77, 184, 1193
Bme1390I CCNGG 6 cut(s) 48, 342, 616, 763, 1230, 1352
Bme18I GGWCC 2 cut(s) 667, 922
BmgT120I GGNCC 3 cut(s) 85, 667, 922
BmiI GGNNCC 5 cut(s) 87, 300, 668, 876, 923
BmrFI CCNGG 6 cut(s) 48, 342, 616, 763, 1230, 1352
BmsI GCATC 3 cut(s) 832, 967, 1031
BpmI CTGGAG 1 cut(s) 1259
Bpu10I CCTNAGC 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 788
BpuMI CCSGG 3 cut(s) 763, 1230, 1352
BsaAI YACGTR 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 2 cut(s) 299, 717
BsaI GGTCTC 2 cut(s) 37, 900
BsaJI CCNNGG 8 cut(s) 70, 241, 294, 425, 457, 762, 1061, 1350
BsaWI WCCGGW 2 cut(s) 522, 575
BsaXI ACNNNNNCTCC 2 cut(s) 1073, 1103
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 399, 463, 768, 790, 931, 1063
Bse1I ACTGG 3 cut(s) 87, 835, 1285
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 3 cut(s) 48, 342, 616
BseDI CCNNGG 8 cut(s) 70, 241, 294, 425, 457, 762, 1061, 1350
BseGI GGATG 5 cut(s) 467, 736, 799, 991, 1360
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 7 cut(s) 71, 399, 463, 768, 790, 931, 1063
BseMI GCAATG 1 cut(s) 987
BseNI ACTGG 3 cut(s) 87, 835, 1285
BseXI GCAGC 2 cut(s) 87, 169
BseYI CCCAGC 2 cut(s) 663, 1250
Bsh1236I CGCG 3 cut(s) 192, 360, 1115
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 8 cut(s) 86, 293, 403, 453, 1121, 1194, 1346, 1378
BshNI GGYRCC 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 5 cut(s) 523, 576, 762, 1229, 1352
BslFI GGGAC 6 cut(s) 334, 554, 568, 680, 780, 935
BslI CCNNNNNNNGG 7 cut(s) 71, 399, 463, 768, 790, 931, 1063
BsmAI GTCTC 4 cut(s) 37, 806, 900, 1386
BsmBI CGTCTC 2 cut(s) 806, 1386
BsmFI GGGAC 6 cut(s) 334, 554, 568, 680, 780, 935
BsnI GGCC 8 cut(s) 86, 293, 403, 453, 1121, 1194, 1346, 1378
Bso31I GGTCTC 2 cut(s) 37, 900
Bsp1286I GDGCHC 1 cut(s) 1235
Bsp1407I TGTACA 2 cut(s) 506, 1222
Bsp143I GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 8 cut(s) 180, 190, 358, 552, 891, 976, 1191, 1402
BspANI GGCC 8 cut(s) 86, 293, 403, 453, 1121, 1194, 1346, 1378
BspFNI CGCG 3 cut(s) 192, 360, 1115
BspLI GGNNCC 5 cut(s) 87, 300, 668, 876, 923
BspMAI CTGCAG 2 cut(s) 102, 520
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 5 cut(s) 215, 479, 520, 869, 882
BspQI GCTCTTC 2 cut(s) 216, 1181
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 2 cut(s) 37, 900
BsrBI CCGCTC 1 cut(s) 1191
BsrDI GCAATG 1 cut(s) 987
BsrGI TGTACA 2 cut(s) 506, 1222
BsrI ACTGG 3 cut(s) 87, 835, 1285
BssECI CCNNGG 8 cut(s) 70, 241, 294, 425, 457, 762, 1061, 1350
BssMI GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
BssNI GRCGYC 2 cut(s) 299, 717
BssT1I CCWWGG 4 cut(s) 70, 241, 294, 457
Bst2UI CCWGG 3 cut(s) 48, 342, 616
Bst4CI ACNGT 4 cut(s) 146, 412, 910, 1163
Bst6I CTCTTC 2 cut(s) 216, 1181
BstACI GRCGYC 2 cut(s) 299, 717
BstAPI GCANNNNNTGC 1 cut(s) 1084
BstAUI TGTACA 2 cut(s) 506, 1222
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 6 cut(s) 133, 550, 640, 781, 978, 1235
BstDEI CTNAG 4 cut(s) 710, 926, 996, 1388
BstDSI CCRYGG 2 cut(s) 70, 425
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 5 cut(s) 467, 736, 799, 991, 1360
BstFNI CGCG 3 cut(s) 192, 360, 1115
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 301, 779
BstKTI GATC 8 cut(s) 169, 223, 250, 364, 487, 515, 877, 1006
BstMAI GTCTC 4 cut(s) 37, 806, 900, 1386
BstMBI GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 723, 1084
BstNI CCWGG 3 cut(s) 48, 342, 616
BstNSI RCATGY 2 cut(s) 783, 1087
BstSCI CCNGG 6 cut(s) 46, 340, 614, 761, 1228, 1350
BstSFI CTRYAG 4 cut(s) 98, 516, 721, 1146
BstUI CGCG 3 cut(s) 192, 360, 1115
BstV1I GCAGC 2 cut(s) 87, 169
BstX2I RGATCY 2 cut(s) 512, 874
BstYI RGATCY 2 cut(s) 512, 874
BsuRI GGCC 8 cut(s) 86, 293, 403, 453, 1121, 1194, 1346, 1378
BtgI CCRYGG 2 cut(s) 70, 425
BtgZI GCGATG 3 cut(s) 207, 657, 1130
BtsCI GGATG 5 cut(s) 467, 736, 799, 991, 1360
BtsIMutI CAGTG 2 cut(s) 454, 1278
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 6 cut(s) 133, 550, 640, 781, 978, 1235
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 2 cut(s) 301, 779
Cfr13I GGNCC 3 cut(s) 85, 667, 922
CseI GACGC 2 cut(s) 565, 706
Csp6I GTAC 4 cut(s) 142, 408, 507, 1223
CviAII CATG 8 cut(s) 71, 118, 136, 701, 727, 780, 821, 1084
CviQI GTAC 4 cut(s) 142, 408, 507, 1223
DdeI CTNAG 4 cut(s) 710, 926, 996, 1388
DinI GGCGCC 1 cut(s) 300
DpnI GATC 8 cut(s) 168, 222, 249, 363, 486, 514, 876, 1005
DpnII GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 4 cut(s) 401, 451, 1119, 1192
Eam1104I CTCTTC 2 cut(s) 216, 1181
EarI CTCTTC 2 cut(s) 216, 1181
Eco130I CCWWGG 4 cut(s) 70, 241, 294, 457
Eco147I AGGCCT 1 cut(s) 1378
Eco24I GRGCYC 1 cut(s) 1235
Eco31I GGTCTC 2 cut(s) 37, 900
Eco47I GGWCC 2 cut(s) 667, 922
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO109I RGGNCCY 2 cut(s) 667, 922
EcoRII CCWGG 3 cut(s) 46, 340, 614
EcoT14I CCWWGG 4 cut(s) 70, 241, 294, 457
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 1235
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
ErhI CCWWGG 4 cut(s) 70, 241, 294, 457
Esp3I CGTCTC 2 cut(s) 806, 1386
FaeI CATG 8 cut(s) 74, 121, 139, 704, 730, 783, 824, 1087
FaqI GGGAC 6 cut(s) 334, 554, 568, 680, 780, 935
FatI CATG 8 cut(s) 70, 117, 135, 700, 726, 779, 820, 1083
FauI CCCGC 5 cut(s) 187, 365, 545, 884, 969
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 3 cut(s) 76, 183, 1192
FokI GGATG 5 cut(s) 474, 723, 806, 978, 1347
FriOI GRGCYC 1 cut(s) 1235
Fsp4HI GCNGC 3 cut(s) 76, 183, 1192
FspBI CTAG 3 cut(s) 458, 1001, 1408
GlaI GCGC 2 cut(s) 300, 778
GluI GCNGC 3 cut(s) 76, 183, 1192
GsaI CCCAGC 2 cut(s) 667, 1254
GsuI CTGGAG 1 cut(s) 1259
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 8 cut(s) 86, 293, 403, 453, 1121, 1194, 1346, 1378
HapII CCGG 5 cut(s) 523, 576, 762, 1229, 1352
HgaI GACGC 2 cut(s) 565, 706
HhaI GCGC 2 cut(s) 301, 779
Hin1I GRCGYC 2 cut(s) 299, 717
Hin1II CATG 8 cut(s) 74, 121, 139, 704, 730, 783, 824, 1087
Hin6I GCGC 2 cut(s) 299, 777
HinP1I GCGC 2 cut(s) 299, 777
HinfI GANTC 4 cut(s) 5, 197, 271, 742
HpaII CCGG 5 cut(s) 523, 576, 762, 1229, 1352
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 2 cut(s) 149, 721
Hpy188I TCNGA 3 cut(s) 366, 741, 1062
Hpy188III TCNNGA 5 cut(s) 92, 746, 805, 899, 1321
Hpy8I GTNNAC 2 cut(s) 149, 721
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 866, 1067
HpyCH4III ACNGT 4 cut(s) 146, 412, 910, 1163
HpyCH4IV ACGT 4 cut(s) 380, 406, 543, 1395
HpyCH4V TGCA 6 cut(s) 100, 518, 814, 824, 845, 1078
HpyF10VI GCNNNNNNNGC 2 cut(s) 723, 1084
HpyF3I CTNAG 4 cut(s) 710, 926, 996, 1388
HpySE526I ACGT 4 cut(s) 380, 406, 543, 1395
Hsp92I GRCGYC 2 cut(s) 299, 717
Hsp92II CATG 8 cut(s) 74, 121, 139, 704, 730, 783, 824, 1087
HspAI GCGC 2 cut(s) 299, 777
KasI GGCGCC 1 cut(s) 298
Kzo9I GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
LguI GCTCTTC 2 cut(s) 216, 1181
LmnI GCTCC 2 cut(s) 343, 857
Lsp1109I GCAGC 2 cut(s) 87, 169
LweI GCATC 3 cut(s) 832, 967, 1031
MaeI CTAG 3 cut(s) 458, 1001, 1408
MaeII ACGT 4 cut(s) 380, 406, 543, 1395
MaeIII GTNAC 4 cut(s) 9, 757, 1276, 1294
MalI GATC 8 cut(s) 168, 222, 249, 363, 486, 514, 876, 1005
MbiI CCGCTC 1 cut(s) 1191
MboI GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
MboII GAAGA 5 cut(s) 203, 442, 851, 1142, 1198
MfeI CAATTG 1 cut(s) 1218
MflI RGATCY 2 cut(s) 512, 874
MhlI GDGCHC 1 cut(s) 1235
MlsI TGGCCA 2 cut(s) 403, 453
MluCI AATT 6 cut(s) 19, 111, 397, 1012, 1218, 1369
MluNI TGGCCA 2 cut(s) 403, 453
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 2 cut(s) 280, 736
MmeI TCCRAC 3 cut(s) 228, 363, 764
MnlI CCTC 6 cut(s) 99, 360, 1056, 1145, 1374, 1389
Mox20I TGGCCA 2 cut(s) 403, 453
Mph1103I ATGCAT 1 cut(s) 826
MscI TGGCCA 2 cut(s) 403, 453
MseI TTAA 3 cut(s) 153, 306, 953
MslI CAYNNNNRTG 2 cut(s) 711, 840
Msp20I TGGCCA 2 cut(s) 403, 453
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 5 cut(s) 523, 576, 762, 1229, 1352
MspR9I CCNGG 6 cut(s) 48, 342, 616, 763, 1230, 1352
MunI CAATTG 1 cut(s) 1218
MvaI CCWGG 3 cut(s) 48, 342, 616
MvnI CGCG 3 cut(s) 192, 360, 1115
MwoI GCNNNNNNNGC 2 cut(s) 723, 1084
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 3 cut(s) 763, 1230, 1352
NcoI CCATGG 1 cut(s) 70
NdeII GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
NlaIII CATG 8 cut(s) 74, 121, 139, 704, 730, 783, 824, 1087
NlaIV GGNNCC 5 cut(s) 87, 300, 668, 876, 923
NmeAIII GCCGAG 1 cut(s) 614
NmuCI GTSAC 3 cut(s) 9, 757, 1276
NsiI ATGCAT 1 cut(s) 826
NspI RCATGY 2 cut(s) 783, 1087
PaeI GCATGC 1 cut(s) 783
PceI AGGCCT 1 cut(s) 1378
PciSI GCTCTTC 2 cut(s) 216, 1181
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 77, 184, 1193
PleI GAGTC 2 cut(s) 279, 736
PluTI GGCGCC 1 cut(s) 302
PpsI GAGTC 2 cut(s) 279, 736
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 2 cut(s) 667, 922
PshBI ATTAAT 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 380
Psp5II RGGWCCY 2 cut(s) 667, 922
Psp6I CCWGG 3 cut(s) 46, 340, 614
PspFI CCCAGC 2 cut(s) 663, 1250
PspGI CCWGG 3 cut(s) 46, 340, 614
PspN4I GGNNCC 5 cut(s) 87, 300, 668, 876, 923
PspPI GGNCC 3 cut(s) 85, 667, 922
PspPPI RGGWCCY 2 cut(s) 667, 922
PstI CTGCAG 2 cut(s) 102, 520
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 2 cut(s) 512, 874
RsaI GTAC 4 cut(s) 143, 409, 508, 1224
RsaNI GTAC 4 cut(s) 142, 408, 507, 1223
RseI CAYNNNNRTG 2 cut(s) 711, 840
SapI GCTCTTC 2 cut(s) 216, 1181
SaqAI TTAA 3 cut(s) 153, 306, 953
SatI GCNGC 3 cut(s) 76, 183, 1192
Sau3AI GATC 8 cut(s) 166, 220, 247, 361, 484, 512, 874, 1003
Sau96I GGNCC 3 cut(s) 85, 667, 922
SchI GAGTC 2 cut(s) 280, 736
ScrFI CCNGG 6 cut(s) 48, 342, 616, 763, 1230, 1352
SduI GDGCHC 1 cut(s) 1235
SfaNI GCATC 3 cut(s) 832, 967, 1031
SfcI CTRYAG 4 cut(s) 98, 516, 721, 1146
SfoI GGCGCC 1 cut(s) 300
SinI GGWCC 2 cut(s) 667, 922
SmiMI CAYNNNNRTG 2 cut(s) 711, 840
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SphI GCATGC 1 cut(s) 783
Sse9I AATT 6 cut(s) 19, 111, 397, 1012, 1218, 1369
SseBI AGGCCT 1 cut(s) 1378
SsiI CCGC 8 cut(s) 180, 190, 358, 552, 891, 976, 1191, 1402
SspDI GGCGCC 1 cut(s) 298
SspI AATATT 1 cut(s) 310
SspMI CTAG 3 cut(s) 458, 1001, 1408
StuI AGGCCT 1 cut(s) 1378
StyD4I CCNGG 6 cut(s) 46, 340, 614, 761, 1228, 1350
StyI CCWWGG 4 cut(s) 70, 241, 294, 457
TaaI ACNGT 4 cut(s) 146, 412, 910, 1163
TaiI ACGT 4 cut(s) 383, 409, 546, 1398
TaqI TCGA 1 cut(s) 169
TasI AATT 6 cut(s) 19, 111, 397, 1012, 1218, 1369
TatI WGTACW 2 cut(s) 506, 1222
TauI GCSGC 1 cut(s) 1194
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 153, 306, 953
Tru9I TTAA 3 cut(s) 153, 306, 953
TscAI CASTG 2 cut(s) 454, 1285
TseFI GTSAC 3 cut(s) 9, 757, 1276
TseI GCWGC 2 cut(s) 75, 182
Tsp45I GTSAC 3 cut(s) 9, 757, 1276
TspDTI ATGAA 4 cut(s) 210, 684, 809, 1143
TspGWI ACGGA 2 cut(s) 680, 887
TspRI CASTG 2 cut(s) 454, 1285
VpaK11BI GGWCC 2 cut(s) 667, 922
VspI ATTAAT 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 3 cut(s) 19, 111, 1369
XceI RCATGY 2 cut(s) 783, 1087
XcmI CCANNNNNNNNNTGG 2 cut(s) 411, 495
XmaJI CCTAGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 3 cut(s) 458, 1001, 1408
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.