AT4G15900

Pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002996
Physical Location & Seq
Forward (+)
9023666 .. 9027808
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15900.1

Sequence Viewer

Length: 1461 bp
ATGCCGGCTCCGACGACGGAGATCGAACCCATCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCCAAGCAGATTCGTCTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGTTGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTTGAACTATACAGGTTCCTCAGGGAAGAGCACCACCATTATACCTGCAAATGTATCTTCATATCAAAGAAATCTGTCAACTGCTGCATTAATGGAGAGAATACCAAGTAGATGGCCCCGGCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTCATTCAGGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCGAGTAATGAATGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCAACTGGAGTTCTGAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTCGCTGTAAGCAATCGACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTGAGTGGTGTCTATTGCTTAGCTCTGCACCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCTGCAGGGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACAGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATGGAAAAACAATGTCAACGCTAACACATCATAAGAAATCTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACAACACCAAGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCTTTCGCAACAGAAAACCATAATTAATGCAATGGCTGTAAACGAGGATGGTGTGATGGTCACTGGAGGTGATAATGGAAGTATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAACAGTCAGAAACTATCGTACAGCCTGGTTCCCTGGAGAGTGAAGCGGGTATATATGCAGCGTGTTATGATAATACAGGTTCAAGATTGGTAACATGCGAGGCTGATAAGACGATAAAGATGTGGAAAGAAGATGAGAATGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACCAAAGGAGATTAGGCGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

486

Amino Acids

54.01

Weight (kDa)

9.09

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 163 - 288 8.8e-11 WDR41
Beta-prop_THOC3 PF25174 166 - 275 4.2e-19 THOC3 beta-propeller domain
WD40 PF00400 167 - 204 3.8e-11 WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd PF24782 167 - 247 1.5e-07 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 168 - 265 3.5e-08 TEP-1 second beta-propeller
WD40_Gbeta PF25391 169 - 308 6.6e-19 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 169 - 291 1.2e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 170 - 288 1.4e-19 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 171 - 289 9.7e-27 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 171 - 307 4.4e-23 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 172 - 341 2.4e-40 WDR5 beta-propeller domain
WDR55 PF24796 179 - 336 2.1e-17 WDR55
WD40_WDHD1_1st PF24817 179 - 255 5.3e-10 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 181 - 251 6.2e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 187 - 367 7.8e-18 WDR36/Utp21 first beta-propeller
Beta-prop_SPT8 PF23798 189 - 283 6.8e-07 SPT8 beta propeller
WD40 PF00400 210 - 246 4.2e-06 WD domain, G-beta repeat
EIF3I PF24805 212 - 295 5.3e-07 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 213 - 293 1.6e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 215 - 367 1.1e-16 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 219 - 297 1.8e-08 WDHD1 first WD40 domain
Beta-prop_EIPR1 PF23609 219 - 329 8.8e-07 EIPR1 beta-propeller
WD40_CDC20-Fz PF24807 229 - 462 8.8e-24 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 230 - 308 3.6e-12 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 249 - 367 3.9e-25 WDR3 first beta-propeller domain
WD40 PF00400 251 - 288 2.1e-08 WD domain, G-beta repeat
Beta-prop_EML PF23409 254 - 471 4e-16 Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 259 - 461 3.1e-09 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 261 - 462 9.4e-29 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 263 - 423 1.1e-12 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 272 - 364 1.7e-09 WDR90/POC16, second beta-propeller
Beta-prop_TEP1_2nd PF25047 273 - 350 5.7e-08 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 274 - 421 1.5e-07 SCAP Beta-propeller
Beta-prop_THOC3 PF25174 275 - 467 9.8e-22 THOC3 beta-propeller domain
WD40 PF00400 295 - 330 3.6e-06 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 297 - 374 8.4e-08 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 297 - 424 9.7e-08 EIF3I
Beta-prop_WDR5 PF25175 298 - 467 1.8e-19 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 309 - 416 2.3e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 314 - 418 7.1e-10 G protein beta WD-40 repeat protein
WDR55 PF24796 336 - 423 2.8e-08 WDR55
Beta-prop_WDR3_2nd PF25172 347 - 467 3.6e-07 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 409
AciI CCGC 2 cut(s) 220, 1307
AclWI GGATC 2 cut(s) 954, 967
AcoI YGGCCR 2 cut(s) 106, 476
AcsI RAATTY 3 cut(s) 882, 980, 1106
AcuI CTGAAG 2 cut(s) 291, 650
AfaI GTAC 6 cut(s) 286, 577, 595, 663, 871, 1281
AfiI CCNNNNNNNGG 3 cut(s) 104, 814, 1120
AgsI TTSAA 5 cut(s) 86, 246, 361, 1344, 1432
AjiI CACGTC 1 cut(s) 209
AjnI CCWGG 3 cut(s) 235, 1285, 1293
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 6 cut(s) 55, 266, 587, 634, 800, 1091
AluI AGCT 6 cut(s) 55, 266, 587, 634, 800, 1091
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 65, 152, 834
AlwI GGATC 2 cut(s) 954, 967
AlwNI CAGNNNCTG 2 cut(s) 46, 269
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 4 cut(s) 106, 470, 476, 667
ApeKI GCWGC 4 cut(s) 232, 263, 440, 1319
ApoI RAATTY 3 cut(s) 882, 980, 1106
AseI ATTAAT 2 cut(s) 446, 1167
AspLEI GCGC 1 cut(s) 1455
AspS9I GGNCC 5 cut(s) 239, 323, 471, 736, 988
AsuC2I CCSGG 2 cut(s) 128, 475
AsuHPI GGTGA 3 cut(s) 722, 946, 1223
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 4 cut(s) 239, 323, 736, 988
AxyI CCTNAGG 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 525
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 4 cut(s) 244, 275, 427, 1331
BccI CCATC 6 cut(s) 38, 462, 605, 1065, 1184, 1192
BciT130I CCWGG 3 cut(s) 237, 1287, 1295
BcnI CCSGG 2 cut(s) 128, 475
BcoDI GTCTC 3 cut(s) 65, 152, 834
BfmI CTRYAG 1 cut(s) 850
BfoI RGCGCY 1 cut(s) 1456
BfuAI ACCTGC 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 484
BglII AGATCT 1 cut(s) 539
BisI GCNGC 4 cut(s) 233, 264, 441, 1320
BlpI GCTNAGC 1 cut(s) 796
BlsI GCNGC 4 cut(s) 234, 265, 442, 1321
Bme1390I CCNGG 5 cut(s) 128, 237, 475, 1287, 1295
Bme18I GGWCC 4 cut(s) 239, 323, 736, 988
BmeT110I CYCGRG 1 cut(s) 556
BmgBI CACGTC 1 cut(s) 209
BmgT120I GGNCC 5 cut(s) 239, 323, 471, 736, 988
BmiI GGNNCC 7 cut(s) 9, 373, 473, 737, 961, 989, 1291
BmrFI CCNGG 5 cut(s) 128, 237, 475, 1287, 1295
BmrI ACTGGG 2 cut(s) 654, 840
BmsI GCATC 3 cut(s) 231, 867, 1094
BmuI ACTGGG 2 cut(s) 654, 840
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 4 cut(s) 642, 1227, 1316, 1392
Bpu1102I GCTNAGC 1 cut(s) 796
BpuEI CTTGAG 2 cut(s) 761, 799
BpuMI CCSGG 2 cut(s) 128, 475
BsaJI CCNNGG 4 cut(s) 103, 473, 494, 1293
BsaWI WCCGGW 1 cut(s) 956
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 814, 1120
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 6 cut(s) 583, 625, 649, 835, 1210, 1244
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 1053, 1179
BseBI CCWGG 3 cut(s) 237, 1287, 1295
BseDI CCNNGG 4 cut(s) 103, 473, 494, 1293
BseGI GGATG 5 cut(s) 616, 823, 1057, 1195, 1417
BseLI CCNNNNNNNGG 3 cut(s) 104, 814, 1120
BseMI GCAATG 2 cut(s) 1053, 1179
BseMII CTCAG 4 cut(s) 70, 163, 390, 909
BseNI ACTGG 6 cut(s) 583, 625, 649, 835, 1210, 1244
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 4 cut(s) 244, 275, 427, 1331
BseYI CCCAGC 1 cut(s) 732
BsgI GTGCAG 1 cut(s) 788
BshFI GGCC 4 cut(s) 108, 472, 478, 669
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 4 cut(s) 5, 128, 475, 957
BslFI GGGAC 3 cut(s) 749, 1001, 1250
BslI CCNNNNNNNGG 3 cut(s) 104, 814, 1120
BsmAI GTCTC 3 cut(s) 65, 152, 834
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 749, 1001, 1250
BsmI GAATGC 2 cut(s) 1075, 1405
BsnI GGCC 4 cut(s) 108, 472, 478, 669
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 389, 525
Bsp143I GATC 6 cut(s) 21, 77, 539, 589, 761, 959
Bsp1720I GCTNAGC 1 cut(s) 796
Bsp19I CCATGG 2 cut(s) 103, 494
BspACI CCGC 2 cut(s) 220, 1307
BspANI GGCC 4 cut(s) 108, 472, 478, 669
BspCNI CTCAG 4 cut(s) 69, 162, 389, 908
BspLI GGNNCC 7 cut(s) 9, 373, 473, 737, 961, 989, 1291
BspMAI CTGCAG 1 cut(s) 854
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 2 cut(s) 954, 967
BspQI GCTCTTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 1053, 1179
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 6 cut(s) 583, 625, 649, 835, 1210, 1244
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 103, 473, 494, 1293
BssMI GATC 6 cut(s) 21, 77, 539, 589, 761, 959
BssT1I CCWWGG 2 cut(s) 103, 494
Bst2UI CCWGG 3 cut(s) 237, 1287, 1295
Bst4CI ACNGT 4 cut(s) 42, 913, 1256, 1266
Bst6I CTCTTC 3 cut(s) 95, 377, 1238
BstC8I GCNNGC 2 cut(s) 6, 489
BstDEI CTNAG 6 cut(s) 56, 149, 279, 376, 796, 895
BstDSI CCRYGG 2 cut(s) 103, 494
BstENI CCTNNNNNAGG 1 cut(s) 1118
BstF5I GGATG 5 cut(s) 616, 823, 1057, 1195, 1417
BstH2I RGCGCY 1 cut(s) 1456
BstHHI GCGC 1 cut(s) 1455
BstKTI GATC 6 cut(s) 24, 80, 542, 592, 764, 962
BstMAI GTCTC 3 cut(s) 65, 152, 834
BstMBI GATC 6 cut(s) 21, 77, 539, 589, 761, 959
BstMWI GCNNNNNNNGC 2 cut(s) 484, 655
BstNI CCWGG 3 cut(s) 237, 1287, 1295
BstNSI RCATGY 3 cut(s) 491, 1144, 1359
BstSCI CCNGG 5 cut(s) 126, 235, 473, 1285, 1293
BstSFI CTRYAG 1 cut(s) 850
BstSLI GKGCMC 1 cut(s) 525
BstV1I GCAGC 4 cut(s) 244, 275, 427, 1331
BstX2I RGATCY 2 cut(s) 539, 959
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 2 cut(s) 539, 959
Bsu36I CCTNAGG 1 cut(s) 376
BsuRI GGCC 4 cut(s) 108, 472, 478, 669
BtgI CCRYGG 2 cut(s) 103, 494
BtrI CACGTC 1 cut(s) 209
BtsCI GGATG 5 cut(s) 616, 823, 1057, 1195, 1417
BtsIMutI CAGTG 2 cut(s) 44, 1203
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 6, 489
CaiI CAGNNNCTG 2 cut(s) 46, 269
CfoI GCGC 1 cut(s) 1455
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 5 cut(s) 239, 323, 471, 736, 988
CseI GACGC 1 cut(s) 326
Csp6I GTAC 6 cut(s) 285, 576, 594, 662, 870, 1280
CviAII CATG 8 cut(s) 104, 488, 495, 770, 902, 965, 1141, 1356
CviQI GTAC 6 cut(s) 285, 576, 594, 662, 870, 1280
DdeI CTNAG 6 cut(s) 56, 149, 279, 376, 796, 895
DpnI GATC 6 cut(s) 23, 79, 541, 591, 763, 961
DpnII GATC 6 cut(s) 21, 77, 539, 589, 761, 959
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 106, 476
Eam1104I CTCTTC 3 cut(s) 95, 377, 1238
EarI CTCTTC 3 cut(s) 95, 377, 1238
Eco130I CCWWGG 2 cut(s) 103, 494
Eco147I AGGCCT 1 cut(s) 669
Eco47I GGWCC 4 cut(s) 239, 323, 736, 988
Eco57I CTGAAG 2 cut(s) 291, 650
Eco81I CCTNAGG 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 1118
EcoO109I RGGNCCY 3 cut(s) 239, 736, 988
EcoRII CCWGG 3 cut(s) 235, 1285, 1293
EcoT14I CCWWGG 2 cut(s) 103, 494
ErhI CCWWGG 2 cut(s) 103, 494
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 8 cut(s) 107, 491, 498, 773, 905, 968, 1144, 1359
FaqI GGGAC 3 cut(s) 749, 1001, 1250
FatI CATG 8 cut(s) 103, 487, 494, 769, 901, 964, 1140, 1355
FauI CCCGC 1 cut(s) 1300
Fnu4HI GCNGC 4 cut(s) 233, 264, 441, 1320
FokI GGATG 5 cut(s) 623, 830, 1044, 1202, 1404
Fsp4HI GCNGC 4 cut(s) 233, 264, 441, 1320
GlaI GCGC 1 cut(s) 1454
GluI GCNGC 4 cut(s) 233, 264, 441, 1320
GsaI CCCAGC 1 cut(s) 736
GsuI CTGGAG 4 cut(s) 642, 1227, 1316, 1392
HaeII RGCGCY 1 cut(s) 1456
HaeIII GGCC 4 cut(s) 108, 472, 478, 669
HapII CCGG 4 cut(s) 5, 128, 475, 957
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 1455
Hin1II CATG 8 cut(s) 107, 491, 498, 773, 905, 968, 1144, 1359
Hin6I GCGC 1 cut(s) 1453
HinP1I GCGC 1 cut(s) 1453
HincII GTYRAC 4 cut(s) 200, 212, 435, 1014
HindII GTYRAC 4 cut(s) 200, 212, 435, 1014
HinfI GANTC 3 cut(s) 142, 196, 842
HpaII CCGG 4 cut(s) 5, 128, 475, 957
HphI GGTGA 3 cut(s) 722, 946, 1223
Hpy166II GTNNAC 5 cut(s) 200, 212, 435, 1014, 1183
Hpy188I TCNGA 6 cut(s) 12, 539, 630, 761, 1043, 1270
Hpy188III TCNNGA 6 cut(s) 122, 269, 601, 897, 1344, 1409
Hpy8I GTNNAC 5 cut(s) 200, 212, 435, 1014, 1183
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 4 cut(s) 252, 266, 1001, 1124
HpyCH4III ACNGT 4 cut(s) 42, 913, 1256, 1266
HpyCH4IV ACGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 484, 655
HpyF3I CTNAG 6 cut(s) 56, 149, 279, 376, 796, 895
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 8 cut(s) 107, 491, 498, 773, 905, 968, 1144, 1359
HspAI GCGC 1 cut(s) 1453
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 6 cut(s) 21, 77, 539, 589, 761, 959
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 2 cut(s) 13, 271
Lsp1109I GCAGC 4 cut(s) 244, 275, 427, 1331
LweI GCATC 3 cut(s) 231, 867, 1094
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 6 cut(s) 42, 773, 952, 1201, 1250, 1351
MalI GATC 6 cut(s) 23, 79, 541, 591, 763, 961
MboI GATC 6 cut(s) 21, 77, 539, 589, 761, 959
MboII GAAGA 6 cut(s) 82, 394, 405, 511, 1255, 1403
MflI RGATCY 2 cut(s) 539, 959
MhlI GDGCHC 2 cut(s) 389, 525
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 7 cut(s) 110, 502, 882, 980, 1106, 1164, 1426
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 2 cut(s) 205, 836
MmeI TCCRAC 4 cut(s) 35, 350, 959, 1285
Mox20I TGGCCA 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 108
MseI TTAA 4 cut(s) 446, 827, 978, 1167
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 587, 1091
MspI CCGG 4 cut(s) 5, 128, 475, 957
MspR9I CCNGG 5 cut(s) 128, 237, 475, 1287, 1295
Mva1269I GAATGC 2 cut(s) 1075, 1405
MvaI CCWGG 3 cut(s) 237, 1287, 1295
MwoI GCNNNNNNNGC 2 cut(s) 484, 655
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 2 cut(s) 128, 475
NcoI CCATGG 2 cut(s) 103, 494
NdeII GATC 6 cut(s) 21, 77, 539, 589, 761, 959
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 8 cut(s) 107, 491, 498, 773, 905, 968, 1144, 1359
NlaIV GGNNCC 7 cut(s) 9, 373, 473, 737, 961, 989, 1291
NmuCI GTSAC 5 cut(s) 42, 773, 952, 1201, 1250
NspI RCATGY 3 cut(s) 491, 1144, 1359
OliI CACNNNNGTG 1 cut(s) 780
PaeI GCATGC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 2 cut(s) 1075, 1405
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 142
PflFI GACNNNGTC 1 cut(s) 845
PkrI GCNGC 4 cut(s) 234, 265, 442, 1321
PleI GAGTC 2 cut(s) 204, 836
PpsI GAGTC 2 cut(s) 204, 836
PpuMI RGGWCCY 3 cut(s) 239, 736, 988
PshBI ATTAAT 2 cut(s) 446, 1167
Psp5II RGGWCCY 3 cut(s) 239, 736, 988
Psp6I CCWGG 3 cut(s) 235, 1285, 1293
PspFI CCCAGC 1 cut(s) 732
PspGI CCWGG 3 cut(s) 235, 1285, 1293
PspN4I GGNNCC 7 cut(s) 9, 373, 473, 737, 961, 989, 1291
PspPI GGNCC 5 cut(s) 239, 323, 471, 736, 988
PspPPI RGGWCCY 3 cut(s) 239, 736, 988
PstI CTGCAG 1 cut(s) 854
PstNI CAGNNNCTG 2 cut(s) 46, 269
PsuI RGATCY 2 cut(s) 539, 959
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 2 cut(s) 587, 1091
RsaI GTAC 6 cut(s) 286, 577, 595, 663, 871, 1281
RsaNI GTAC 6 cut(s) 285, 576, 594, 662, 870, 1280
RseI CAYNNNNRTG 1 cut(s) 780
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 4 cut(s) 446, 827, 978, 1167
SatI GCNGC 4 cut(s) 233, 264, 441, 1320
Sau3AI GATC 6 cut(s) 21, 77, 539, 589, 761, 959
Sau96I GGNCC 5 cut(s) 239, 323, 471, 736, 988
SchI GAGTC 2 cut(s) 205, 836
ScrFI CCNGG 5 cut(s) 128, 237, 475, 1287, 1295
SduI GDGCHC 2 cut(s) 389, 525
SfaNI GCATC 3 cut(s) 231, 867, 1094
SfcI CTRYAG 1 cut(s) 850
SinI GGWCC 4 cut(s) 239, 323, 736, 988
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 740, 778
SmoI CTYRAG 2 cut(s) 740, 778
SphI GCATGC 1 cut(s) 491
Sse9I AATT 7 cut(s) 110, 502, 882, 980, 1106, 1164, 1426
SseBI AGGCCT 1 cut(s) 669
SsiI CCGC 2 cut(s) 220, 1307
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 5 cut(s) 126, 235, 473, 1285, 1293
StyI CCWWGG 2 cut(s) 103, 494
TaaI ACNGT 4 cut(s) 42, 913, 1256, 1266
TaiI ACGT 1 cut(s) 211
TaqI TCGA 5 cut(s) 24, 33, 654, 685, 994
TasI AATT 7 cut(s) 110, 502, 882, 980, 1106, 1164, 1426
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 4 cut(s) 446, 827, 978, 1167
Tru9I TTAA 4 cut(s) 446, 827, 978, 1167
TscAI CASTG 2 cut(s) 51, 1210
TseFI GTSAC 5 cut(s) 42, 773, 952, 1201, 1250
TseI GCWGC 4 cut(s) 232, 263, 440, 1319
Tsp45I GTSAC 5 cut(s) 42, 773, 952, 1201, 1250
TspDTI ATGAA 3 cut(s) 176, 405, 579
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 51, 1210
Tth111I GACNNNGTC 1 cut(s) 845
VpaK11BI GGWCC 4 cut(s) 239, 323, 736, 988
VspI ATTAAT 2 cut(s) 446, 1167
XagI CCTNNNNNAGG 1 cut(s) 1118
XapI RAATTY 3 cut(s) 882, 980, 1106
XceI RCATGY 3 cut(s) 491, 1144, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.