RchiOBHm_Chr4g0429811

malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002996
Physical Location & Seq
Forward (+)
54520325 .. 54520848
524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39858

Sequence Viewer

Length: 510 bp
ATGGGATGTAGCAACCGGAAAGCTACAGCTTACAGCCTTACACTGACAGGACATACTCTTCAAATTCGAGGCCTTGTCGTTAGCAGCAAGCATCCCTATATGTTCTCTGCTGTCGATCACAAAGAAGTTAAATTTTGGGACCTTACACAGAATAAGGTCATTCGTTCATATCATGGTCATCTAAGTAGTGTTTACTGCTTGGCAACTCATCCCACTCTTGATATTCTACTCACAGGGGGACGTGATTCAGTATGCCGGGTTTGGGATATTCGTACCCAAACGCATGTTCATGCATTCTTGGGGTACGACAGCACAGTTTGCTCGGTTTTCACTAGACCAATCGATCCCCACGTTGTCACTGGTTCTCACGCCGCAACCATCAAGTTCTGGGACCTTGGAGGTGGAAAAGCAATGTCAACTCTCACACACCATAAGAAATCCGTGCGTGCAATGGCACCACATCCTAAGGATCAGCATTGTTTTACCTTCTGTGTCAGTAGACAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

169

Amino Acids

18.93

Weight (kDa)

9.48

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 6 - 97 2.9e-12 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 10 - 151 2e-24 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 10 - 163 5.5e-24 WDR3 first beta-propeller domain
WDR55 PF24796 10 - 111 2e-08 WDR55
WD40_Gbeta PF25391 12 - 109 2.8e-09 G protein beta WD-40 repeat protein
EIF3I PF24805 13 - 99 2e-07 EIF3I
WD40_WDHD1_1st PF24817 13 - 99 1.3e-07 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 14 - 144 8.6e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 15 - 89 5.3e-09 WDR3 second beta-propeller domain
Beta-prop_DCAF4 PF23761 17 - 93 9.5e-06 DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_CDC20-Fz PF24807 18 - 159 5e-18 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 42 - 153 2.5e-11 WDR36/Utp21 first beta-propeller
WD40 PF00400 52 - 89 1e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 53 - 158 2.6e-13 THOC3 beta-propeller domain
Beta-prop_EML PF23409 55 - 161 1.3e-08 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 63 - 155 4.3e-07 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 74 - 152 5.6e-10 TEP-1 second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 74 - 165 7.9e-08 WDR90/POC16, second beta-propeller
WD40_Prp19 PF24814 75 - 164 4e-12 Prp19 WD40 domain
WD40_Gbeta PF25391 77 - 158 2.9e-08 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 86 - 164 8.6e-06 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 499
AciI CCGC 1 cut(s) 372
AclWI GGATC 2 cut(s) 338, 477
AcsI RAATTY 2 cut(s) 63, 131
AfaI GTAC 2 cut(s) 274, 305
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 2 cut(s) 23, 29
AluI AGCT 2 cut(s) 23, 29
AlwI GGATC 2 cut(s) 338, 477
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 63, 131
AspS9I GGNCC 2 cut(s) 139, 391
AsuC2I CCSGG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 139, 391
AxyI CCTNAGG 1 cut(s) 465
BanI GGYRCC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 386
BcnI CCSGG 1 cut(s) 257
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 85, 372
BlsI GCNGC 2 cut(s) 86, 373
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 2 cut(s) 139, 391
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 139, 391
BmiI GGNNCC 3 cut(s) 140, 392, 456
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 364
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 2 cut(s) 417, 456
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 11, 91, 208, 460
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 2 cut(s) 417, 456
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 454
BshVI ATCGAT 1 cut(s) 342
BsiSI CCGG 2 cut(s) 16, 256
BslFI GGGAC 3 cut(s) 152, 252, 404
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 3 cut(s) 152, 252, 404
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 115, 343, 469
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 140, 392, 456
BspPI GGATC 2 cut(s) 338, 477
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 417, 456
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 3 cut(s) 115, 343, 469
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 89, 447
BstDEI CTNAG 2 cut(s) 182, 465
BstF5I GGATG 4 cut(s) 11, 91, 208, 460
BstKTI GATC 3 cut(s) 118, 346, 472
BstMBI GATC 3 cut(s) 115, 343, 469
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 342
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 4 cut(s) 11, 91, 208, 460
BtsIMutI CAGTG 2 cut(s) 41, 357
Cac8I GCNNGC 2 cut(s) 89, 447
Cfr13I GGNCC 2 cut(s) 139, 391
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 273, 304
CviAII CATG 3 cut(s) 173, 284, 290
CviJI RGCY 4 cut(s) 23, 29, 36, 72
CviKI_1 RGCY 4 cut(s) 23, 29, 36, 72
CviQI GTAC 2 cut(s) 273, 304
DdeI CTNAG 2 cut(s) 182, 465
DpnI GATC 3 cut(s) 117, 345, 471
DpnII GATC 3 cut(s) 115, 343, 469
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 139, 391
Eco81I CCTNAGG 1 cut(s) 465
EcoO109I RGGNCCY 2 cut(s) 139, 391
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 3 cut(s) 176, 287, 293
FaiI YATR 9 cut(s) 54, 99, 101, 169, 174, 253, 285, 291, 432
FaqI GGGAC 3 cut(s) 152, 252, 404
FatI CATG 3 cut(s) 172, 283, 289
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 85, 372
FokI GGATG 4 cut(s) 18, 78, 195, 447
Fsp4HI GCNGC 2 cut(s) 85, 372
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 85, 372
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 16, 256
Hin1II CATG 3 cut(s) 176, 287, 293
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 245
HpaII CCGG 2 cut(s) 16, 256
Hpy166II GTNNAC 3 cut(s) 193, 417, 500
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 193, 417, 500
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 241, 351
HpyCH4V TGCA 2 cut(s) 293, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 2 cut(s) 182, 465
HpySE526I ACGT 2 cut(s) 241, 351
Hsp92II CATG 3 cut(s) 176, 287, 293
Kzo9I GATC 3 cut(s) 115, 343, 469
LpnPI CCDG 6 cut(s) 29, 33, 219, 269, 345, 373
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 241, 351
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 117, 345, 471
MboI GATC 3 cut(s) 115, 343, 469
MboII GAAGA 1 cut(s) 50
MluCI AATT 2 cut(s) 63, 131
MnlI CCTC 2 cut(s) 62, 392
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 2 cut(s) 129, 508
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 2 cut(s) 16, 256
MspR9I CCNGG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 257
NdeII GATC 3 cut(s) 115, 343, 469
NlaIII CATG 3 cut(s) 176, 287, 293
NlaIV GGNNCC 3 cut(s) 140, 392, 456
NmuCI GTSAC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 1 cut(s) 287
PceI AGGCCT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 86, 373
PpuMI RGGWCCY 2 cut(s) 139, 391
Psp5II RGGWCCY 2 cut(s) 139, 391
PspN4I GGNNCC 3 cut(s) 140, 392, 456
PspPI GGNCC 2 cut(s) 139, 391
PspPPI RGGWCCY 2 cut(s) 139, 391
RsaI GTAC 2 cut(s) 274, 305
RsaNI GTAC 2 cut(s) 273, 304
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 129, 508
SatI GCNGC 2 cut(s) 85, 372
Sau3AI GATC 3 cut(s) 115, 343, 469
Sau96I GGNCC 2 cut(s) 139, 391
ScrFI CCNGG 1 cut(s) 257
SetI ASST 9 cut(s) 25, 31, 144, 159, 244, 354, 396, 403, 488
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 2 cut(s) 139, 391
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 2 cut(s) 63, 131
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 244, 354
TaqI TCGA 3 cut(s) 67, 114, 342
TasI AATT 2 cut(s) 63, 131
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 129, 508
Tru9I TTAA 2 cut(s) 129, 508
TscAI CASTG 2 cut(s) 48, 364
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 156, 278
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 48, 364
VpaK11BI GGWCC 2 cut(s) 139, 391
XapI RAATTY 2 cut(s) 63, 131
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 499
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.