Rroxscaffold_5G00364710

Protein pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002996
Physical Location & Seq
Forward (+)
45893073 .. 45898383
5311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364710.1

Sequence Viewer

Length: 1476 bp
ATGCCTGGTCCCACCTTAGAGATGGAGCGAGTAGAGCCACAGTCGCTGAAAAAGCTCACTTCCAAATCCCTCAAGCGAGCTCTCGATCTCTTCTCCCCACTTCATAGCCAATTAGCTCCTCCTGATCCACAGAGTAAAAAAATTCGCATGAGCCACAAGATAAGCGTTGAGTATGGAGGAATTGTACCCACTGCTAGTCAGAAACCCTCTCGCCCAGCTGATTCTGGTGCTCCGAATCGTGGACCATCGGGGCCTTCCAATGCCCTTGCCCTTCCAGACTCTAGAAATATAAAGACGGAAGCAGCTCAAAATTCTTTGGTGGTTGGTCCATCTGCACCAAAGGCACCGAATAATATTGGAATTTCGGGTAAAGGCACTTTAGTGGTTTCTGCTCCAGGATCATATGAAAGGGCAGTAGAAATGCTAAACGTTATAAGGAACCCATCAACATCGGCTATAATGGAAAGAATTTCCAGTAGATGGCCACGTCCTGAGTGGCATGCTCCTTGGAAGATTTACAGGGTCATCAGCGGCCACTTGGGATGGGTACGCTCTATTGCTTTTGATCCAAGTAATAAGTGGTTTTGTACAGGCTCTGCAGATCGTACAATAAAGATATGGGATGTAGGAACCGGAACACTACAGCTTACACTGACTGGACATATTGAGCAAATACGAGGCCTTGCTGTTAGCAGCAGGCATACCTATATGTTCTCTGCTGGTGATGATAAACAAGTCAAATGCTGGGACCTTGAGCAGAACAAGGTCATCCGTTCATACCATGGTCATCTAAGTGGTGTTTACTGCTTGGCTCTTCATCCCACTCTCGATATATTACTAACTGGGGGCGTGATTCAGTATGCCGGGTATGTCTGGGATATTCGTAGCAAGATGCAAGCTCATGCATTGTCCGGGCATGATAACACAGTTTGCTCAGTTTTCACTCGGCCAACGGATCCACAAGTTGTTACTGGCTCTCACGACTCAACCATCAAGTTCTGGGACCTTCGATATGGAAAAACGATGTCAACCATCACACACCATAAGAAATCTGTACGTGCAATTGCGCAACATCCTAAAGAGAATGCTTTTGCATCAGCATCAGCCGATAACATTAAGAAATTCAGCCTTCCAAGAGGGGAATTTTTACACAACATGCTCTCTCAGCAGAAAACCATAATTAATGCAATGGCTATCAATGAGGAGGGAGTTATGGCTACTGGAGGTGACAATGGGAGCTTGTGGTTTTGGGATTGGAAGAGTGGTCACAATTTTCAGCAATCACAAACAATCGTACAGCCTGGTTCACTTGATAGTGAAGCTGGCATATATGCACTTTCCTATGATGTTACTGGTACAAGGCTTGTTAGTTGTGAAGCTGACAAGACAATCAAAATGTGGAAACAAGATGAAAATGCCACTCCAGAAACTCATCCTATCAATTTCAAGCCCCCTAAAGATATCAGACGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

491

Amino Acids

54.22

Weight (kDa)

9.44

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 167 - 283 1.2e-08 WDR41
Beta-prop_CAF1B_HIR1 PF24105 169 - 258 1.4e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 170 - 279 1.5e-18 THOC3 beta-propeller domain
WD40_Gbeta PF25391 171 - 282 2e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 171 - 283 6.4e-16 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 171 - 307 6.3e-19 Prp19 WD40 domain
WD40 PF00400 171 - 208 4.4e-11 WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd PF24782 173 - 251 1.2e-06 MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz PF24807 173 - 284 5.8e-14 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 174 - 269 4.2e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 175 - 283 1.8e-22 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 176 - 348 3.9e-37 WDR5 beta-propeller domain
Beta-prop_SPT8 PF23798 183 - 276 3.3e-06 SPT8 beta propeller
WD40_WDHD1_1st PF24817 183 - 259 4.4e-11 WDHD1 first WD40 domain
WDR55 PF24796 183 - 341 1e-13 WDR55
Beta-prop_WDR90_POC16_2nd PF23393 185 - 255 3.9e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 190 - 372 1.8e-13 WDR36/Utp21 first beta-propeller
WD40 PF00400 213 - 250 2.8e-06 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 219 - 372 5.6e-14 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 226 - 354 1.2e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML PF23409 258 - 476 2.2e-15 Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19 PF24814 265 - 467 2.2e-25 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 290 - 357 6.3e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 290 - 371 1.5e-15 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 291 - 392 1e-10 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 291 - 429 2.3e-09 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 291 - 473 3e-19 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 300 - 374 1.2e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 301 - 335 2.1e-06 WD domain, G-beta repeat
EIF3I PF24805 303 - 428 2.5e-06 EIF3I
Beta-prop_WDR90_POC16_2nd PF23393 318 - 421 1.2e-06 WDR90/POC16, second beta-propeller
WDR55 PF24796 341 - 426 9.3e-08 WDR55
Beta-prop_WDR5 PF25175 344 - 473 7.6e-10 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 352 - 473 4.5e-06 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
Acc16I TGCGCA 1 cut(s) 1068
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 480
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 429
AclWI GGATC 5 cut(s) 119, 406, 560, 950, 963
AcoI YGGCCR 3 cut(s) 482, 532, 947
AcsI RAATTY 6 cut(s) 141, 310, 360, 468, 1121, 1142
AfaI GTAC 7 cut(s) 186, 549, 589, 607, 1056, 1296, 1357
AfiI CCNNNNNNNGG 2 cut(s) 239, 480
AgsI TTSAA 1 cut(s) 1447
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 3 cut(s) 4, 394, 1300
AleI CACNNNNGTG 1 cut(s) 380
Alw21I GWGCWC 2 cut(s) 82, 232
AlwI GGATC 5 cut(s) 119, 406, 560, 950, 963
AlwNI CAGNNNCTG 2 cut(s) 46, 596
AoxI GGCC 5 cut(s) 251, 482, 532, 679, 947
ApeKI GCWGC 2 cut(s) 302, 693
ApoI RAATTY 6 cut(s) 141, 310, 360, 468, 1121, 1142
AseI ATTAAT 1 cut(s) 1182
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 6 cut(s) 8, 242, 251, 326, 748, 1003
AsuC2I CCSGG 2 cut(s) 865, 913
AsuHPI GGTGA 2 cut(s) 734, 1238
AvaII GGWCC 5 cut(s) 8, 242, 326, 748, 1003
BalI TGGCCA 1 cut(s) 484
BamHI GGATCC 1 cut(s) 955
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 232
BbvI GCAGC 2 cut(s) 314, 705
BccI CCATC 8 cut(s) 16, 253, 337, 451, 474, 537, 998, 1040
BciT130I CCWGG 3 cut(s) 6, 396, 1302
BcnI CCSGG 2 cut(s) 865, 913
BfaI CTAG 3 cut(s) 195, 282, 1474
BfmI CTRYAG 2 cut(s) 597, 641
BisI GCNGC 3 cut(s) 303, 532, 694
BlsI GCNGC 3 cut(s) 304, 533, 695
Bme1390I CCNGG 5 cut(s) 6, 396, 865, 913, 1302
Bme18I GGWCC 5 cut(s) 8, 242, 326, 748, 1003
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 6 cut(s) 8, 242, 251, 326, 748, 1003
BmiI GGNNCC 8 cut(s) 10, 252, 345, 440, 631, 749, 957, 1004
BmrFI CCNGG 5 cut(s) 6, 396, 865, 913, 1302
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 3 cut(s) 882, 1103, 1109
BmuI ACTGGG 1 cut(s) 852
BpmI CTGGAG 3 cut(s) 378, 1242, 1407
BpuEI CTTGAG 2 cut(s) 56, 773
BpuMI CCSGG 2 cut(s) 865, 913
BsaAI YACGTR 1 cut(s) 1058
BsaJI CCNNGG 2 cut(s) 506, 781
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 480
Bse1I ACTGG 6 cut(s) 474, 661, 847, 976, 1225, 1357
Bse3DI GCAATG 1 cut(s) 1194
BseBI CCWGG 3 cut(s) 6, 396, 1302
BseDI CCNNGG 2 cut(s) 506, 781
BseGI GGATG 6 cut(s) 548, 628, 768, 817, 1072, 1432
BseLI CCNNNNNNNGG 2 cut(s) 239, 480
BseMI GCAATG 1 cut(s) 1194
BseMII CTCAG 3 cut(s) 483, 948, 1178
BseNI ACTGG 6 cut(s) 474, 661, 847, 976, 1225, 1357
BseRI GAGGAG 2 cut(s) 108, 1217
BseXI GCAGC 2 cut(s) 314, 705
BseYI CCCAGC 2 cut(s) 214, 744
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 5 cut(s) 253, 484, 534, 681, 949
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 82, 232
BsiSI CCGG 3 cut(s) 633, 864, 912
BslFI GGGAC 2 cut(s) 761, 1016
BslI CCNNNNNNNGG 2 cut(s) 239, 480
BsmFI GGGAC 2 cut(s) 761, 1016
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 5 cut(s) 253, 484, 534, 681, 949
Bsp1286I GDGCHC 2 cut(s) 82, 232
Bsp1407I TGTACA 1 cut(s) 587
Bsp143I GATC 6 cut(s) 85, 124, 398, 565, 601, 955
Bsp19I CCATGG 1 cut(s) 781
BspACI CCGC 1 cut(s) 531
BspANI GGCC 5 cut(s) 253, 484, 534, 681, 949
BspCNI CTCAG 3 cut(s) 484, 947, 1177
BspLI GGNNCC 8 cut(s) 10, 252, 345, 440, 631, 749, 957, 1004
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 5 cut(s) 119, 406, 560, 950, 963
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 1194
BsrGI TGTACA 1 cut(s) 587
BsrI ACTGG 6 cut(s) 474, 661, 847, 976, 1225, 1357
BssECI CCNNGG 2 cut(s) 506, 781
BssMI GATC 6 cut(s) 85, 124, 398, 565, 601, 955
BssT1I CCWWGG 2 cut(s) 506, 781
Bst2UI CCWGG 3 cut(s) 6, 396, 1302
Bst4CI ACNGT 3 cut(s) 42, 928, 1470
Bst6I CTCTTC 3 cut(s) 95, 819, 1253
BstAUI TGTACA 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 1058
BstC8I GCNNGC 5 cut(s) 78, 501, 698, 897, 1324
BstDEI CTNAG 5 cut(s) 16, 492, 791, 934, 1164
BstDSI CCRYGG 1 cut(s) 781
BstF5I GGATG 6 cut(s) 548, 628, 768, 817, 1072, 1432
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 6 cut(s) 88, 127, 401, 568, 604, 958
BstMBI GATC 6 cut(s) 85, 124, 398, 565, 601, 955
BstMWI GCNNNNNNNGC 5 cut(s) 34, 43, 52, 341, 1165
BstNI CCWGG 3 cut(s) 6, 396, 1302
BstNSI RCATGY 2 cut(s) 503, 1159
BstSCI CCNGG 5 cut(s) 4, 394, 863, 911, 1300
BstSFI CTRYAG 2 cut(s) 597, 641
BstV1I GCAGC 2 cut(s) 314, 705
BstX2I RGATCY 1 cut(s) 955
BstYI RGATCY 1 cut(s) 955
BsuRI GGCC 5 cut(s) 253, 484, 534, 681, 949
BtgI CCRYGG 1 cut(s) 781
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 6 cut(s) 548, 628, 768, 817, 1072, 1432
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 650
Cac8I GCNNGC 5 cut(s) 78, 501, 698, 897, 1324
CaiI CAGNNNCTG 2 cut(s) 46, 596
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 6 cut(s) 8, 242, 251, 326, 748, 1003
Csp6I GTAC 7 cut(s) 185, 548, 588, 606, 1055, 1295, 1356
CviAII CATG 6 cut(s) 148, 500, 782, 902, 917, 1156
CviQI GTAC 7 cut(s) 185, 548, 588, 606, 1055, 1295, 1356
DdeI CTNAG 5 cut(s) 16, 492, 791, 934, 1164
DpnI GATC 6 cut(s) 87, 126, 400, 567, 603, 957
DpnII GATC 6 cut(s) 85, 124, 398, 565, 601, 955
EaeI YGGCCR 3 cut(s) 482, 532, 947
Eam1104I CTCTTC 3 cut(s) 95, 819, 1253
EarI CTCTTC 3 cut(s) 95, 819, 1253
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 506, 781
Eco147I AGGCCT 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 1462
Eco47I GGWCC 5 cut(s) 8, 242, 326, 748, 1003
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoO109I RGGNCCY 3 cut(s) 251, 748, 1003
EcoRII CCWGG 3 cut(s) 4, 394, 1300
EcoRV GATATC 1 cut(s) 1462
EcoT14I CCWWGG 2 cut(s) 506, 781
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 506, 781
FaeI CATG 6 cut(s) 151, 503, 785, 905, 920, 1159
FaqI GGGAC 2 cut(s) 761, 1016
FatI CATG 6 cut(s) 147, 499, 781, 901, 916, 1155
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 303, 532, 694
FokI GGATG 6 cut(s) 555, 635, 755, 804, 1059, 1419
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 303, 532, 694
FspBI CTAG 3 cut(s) 195, 282, 1474
FspI TGCGCA 1 cut(s) 1068
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 3 cut(s) 303, 532, 694
GsaI CCCAGC 2 cut(s) 218, 748
GsuI CTGGAG 3 cut(s) 378, 1242, 1407
HaeIII GGCC 5 cut(s) 253, 484, 534, 681, 949
HapII CCGG 3 cut(s) 633, 864, 912
HhaI GCGC 1 cut(s) 1069
Hin1II CATG 6 cut(s) 151, 503, 785, 905, 920, 1159
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HinfI GANTC 5 cut(s) 221, 235, 278, 853, 983
HpaII CCGG 3 cut(s) 633, 864, 912
HphI GGTGA 2 cut(s) 734, 1238
Hpy166II GTNNAC 4 cut(s) 242, 802, 1029, 1307
Hpy188I TCNGA 3 cut(s) 201, 234, 1466
Hpy188III TCNNGA 8 cut(s) 83, 122, 275, 282, 491, 827, 980, 1424
Hpy8I GTNNAC 4 cut(s) 242, 802, 1029, 1307
HpyAV CCTTC 4 cut(s) 264, 281, 1016, 1139
HpyCH4III ACNGT 3 cut(s) 42, 928, 1470
HpyCH4IV ACGT 3 cut(s) 429, 487, 1057
HpyCH4V TGCA 8 cut(s) 335, 599, 895, 905, 1061, 1094, 1187, 1334
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 43, 52, 341, 1165
HpyF3I CTNAG 5 cut(s) 16, 492, 791, 934, 1164
HpySE526I ACGT 3 cut(s) 429, 487, 1057
Hsp92II CATG 6 cut(s) 151, 503, 785, 905, 920, 1159
HspAI GCGC 1 cut(s) 1067
Kzo9I GATC 6 cut(s) 85, 124, 398, 565, 601, 955
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 6 cut(s) 25, 121, 235, 397, 508, 1236
Lsp1109I GCAGC 2 cut(s) 314, 705
LweI GCATC 3 cut(s) 882, 1103, 1109
MaeI CTAG 3 cut(s) 195, 282, 1474
MaeII ACGT 3 cut(s) 429, 487, 1057
MaeIII GTNAC 4 cut(s) 967, 1226, 1265, 1348
MalI GATC 6 cut(s) 87, 126, 400, 567, 603, 957
MboI GATC 6 cut(s) 85, 124, 398, 565, 601, 955
MboII GAAGA 4 cut(s) 82, 523, 806, 1270
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 1 cut(s) 955
MhlI GDGCHC 2 cut(s) 82, 232
MlsI TGGCCA 1 cut(s) 484
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 2 cut(s) 272, 977
MnlI CCTC 9 cut(s) 80, 129, 170, 217, 671, 1130, 1195, 1198, 1217
Mox20I TGGCCA 1 cut(s) 484
Mph1103I ATGCAT 1 cut(s) 907
MscI TGGCCA 1 cut(s) 484
MseI TTAA 2 cut(s) 1116, 1182
MslI CAYNNNNRTG 2 cut(s) 380, 792
Msp20I TGGCCA 1 cut(s) 484
MspA1I CMGCKG 2 cut(s) 218, 531
MspI CCGG 3 cut(s) 633, 864, 912
MspR9I CCNGG 5 cut(s) 6, 396, 865, 913, 1302
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 3 cut(s) 6, 396, 1302
MwoI GCNNNNNNNGC 5 cut(s) 34, 43, 52, 341, 1165
NciI CCSGG 2 cut(s) 865, 913
NcoI CCATGG 1 cut(s) 781
NdeI CATATG 1 cut(s) 403
NdeII GATC 6 cut(s) 85, 124, 398, 565, 601, 955
NlaIII CATG 6 cut(s) 151, 503, 785, 905, 920, 1159
NlaIV GGNNCC 8 cut(s) 10, 252, 345, 440, 631, 749, 957, 1004
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 2 cut(s) 1226, 1265
NsbI TGCGCA 1 cut(s) 1068
NsiI ATGCAT 1 cut(s) 907
NspI RCATGY 2 cut(s) 503, 1159
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 1 cut(s) 503
PceI AGGCCT 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 819
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 3 cut(s) 221, 235, 853
PflMI CCANNNNNTGG 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 3 cut(s) 304, 533, 695
PleI GAGTC 2 cut(s) 272, 977
PpsI GAGTC 2 cut(s) 272, 977
Ppu21I YACGTR 1 cut(s) 1058
PpuMI RGGWCCY 2 cut(s) 748, 1003
PshBI ATTAAT 1 cut(s) 1182
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 429
Psp5II RGGWCCY 2 cut(s) 748, 1003
Psp6I CCWGG 3 cut(s) 4, 394, 1300
PspFI CCCAGC 2 cut(s) 214, 744
PspGI CCWGG 3 cut(s) 4, 394, 1300
PspN4I GGNNCC 8 cut(s) 10, 252, 345, 440, 631, 749, 957, 1004
PspPI GGNCC 6 cut(s) 8, 242, 251, 326, 748, 1003
PspPPI RGGWCCY 2 cut(s) 748, 1003
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 2 cut(s) 46, 596
PsuI RGATCY 1 cut(s) 955
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 7 cut(s) 186, 549, 589, 607, 1056, 1296, 1357
RsaNI GTAC 7 cut(s) 185, 548, 588, 606, 1055, 1295, 1356
RseI CAYNNNNRTG 2 cut(s) 380, 792
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 2 cut(s) 1116, 1182
SatI GCNGC 3 cut(s) 303, 532, 694
Sau3AI GATC 6 cut(s) 85, 124, 398, 565, 601, 955
Sau96I GGNCC 6 cut(s) 8, 242, 251, 326, 748, 1003
SchI GAGTC 2 cut(s) 272, 977
ScrFI CCNGG 5 cut(s) 6, 396, 865, 913, 1302
SduI GDGCHC 2 cut(s) 82, 232
SfaNI GCATC 3 cut(s) 882, 1103, 1109
SfcI CTRYAG 2 cut(s) 597, 641
SinI GGWCC 5 cut(s) 8, 242, 326, 748, 1003
SmiMI CAYNNNNRTG 2 cut(s) 380, 792
SmlI CTYRAG 2 cut(s) 71, 752
SmoI CTYRAG 2 cut(s) 71, 752
SphI GCATGC 1 cut(s) 503
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 1 cut(s) 531
SspI AATATT 1 cut(s) 355
SspMI CTAG 3 cut(s) 195, 282, 1474
SstI GAGCTC 1 cut(s) 82
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 5 cut(s) 4, 394, 863, 911, 1300
StyI CCWWGG 2 cut(s) 506, 781
TaaI ACNGT 3 cut(s) 42, 928, 1470
TaiI ACGT 3 cut(s) 432, 490, 1060
TaqI TCGA 3 cut(s) 84, 828, 1009
TatI WGTACW 1 cut(s) 587
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 3 cut(s) 221, 235, 853
Tru1I TTAA 2 cut(s) 1116, 1182
Tru9I TTAA 2 cut(s) 1116, 1182
TscAI CASTG 2 cut(s) 196, 657
TseFI GTSAC 2 cut(s) 1226, 1265
TseI GCWGC 2 cut(s) 302, 693
Tsp45I GTSAC 2 cut(s) 1226, 1265
TspDTI ATGAA 5 cut(s) 92, 420, 765, 806, 1425
TspGWI ACGGA 3 cut(s) 311, 761, 968
TspRI CASTG 2 cut(s) 196, 657
Van91I CCANNNNNTGG 1 cut(s) 480
VpaK11BI GGWCC 5 cut(s) 8, 242, 326, 748, 1003
VspI ATTAAT 1 cut(s) 1182
XapI RAATTY 6 cut(s) 141, 310, 360, 468, 1121, 1142
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 2 cut(s) 503, 1159
XcmI CCANNNNNNNNNTGG 3 cut(s) 19, 492, 576
XspI CTAG 3 cut(s) 195, 282, 1474
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.