Protein pleiotropic regulatory locus
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16650 AT4G15900 |
| fragaria_vesca | FvH4_4g18400 FvH4_4g23450 |
| malus_domestica | MD00G1128100.v1.1 MD00G1184900.v1.1 MD05G1262800.v1.1 MD16G1081900.v1.1 MD16G1167100.v1.1 |
| prunus_persica | Prupe.1G134100_v2.0.a1 Prupe.1G134100_v2.0.a1 Prupe.6G318200_v2.0.a1 |
| pyrus_communis | pycom06g06670 pycom13g14280 pycom16g14110 |
| rosa_chinensis | RchiOBHm_Chr4g0422851 RchiOBHm_Chr4g0429811 RchiOBHm_Chr4g0429821 |
| rosa_laevigata | RLG00000007041 RLG00000007600 |
| rosa_multiflora | Rmu_co8144486.1_g000001 Rmu_co8520863.1_g000001 Rmu_sc0000830.1_g000042 Rmu_sc0006762.1_g000001 Rmu_sc0021868.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00364710 Rroxscaffold_5G00371580 |
| rosa_rugosa | Rorug04G0181800 Rorug04G0238500 |
| rosa_samantha | Rh4AG242200 Rh4BG245800 Rh4BG300800 Rh4BG300900 Rh4CG256100 Rh4DG240800 Rh4DG297900 |
| rosa_wichuraiana | Rw4G020860 Rw4G025490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 343 |
| AccBSI | CCGCTC | 1 cut(s) | 1230 |
| AccII | CGCG | 2 cut(s) | 84, 240 |
| AciI | CCGC | 5 cut(s) | 206, 211, 240, 1230, 1418 |
| AclWI | GGATC | 2 cut(s) | 530, 917 |
| AcoI | YGGCCR | 3 cut(s) | 452, 502, 1182 |
| AcsI | RAATTY | 3 cut(s) | 141, 438, 1109 |
| AcuI | CTGAAG | 1 cut(s) | 1396 |
| AfaI | GTAC | 7 cut(s) | 148, 173, 295, 519, 577, 1263, 1324 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AgsI | TTSAA | 5 cut(s) | 185, 417, 638, 725, 1093 |
| AhlI | ACTAGT | 1 cut(s) | 703 |
| AjiI | CACGTC | 2 cut(s) | 458, 821 |
| AjnI | CCWGG | 3 cut(s) | 4, 394, 1267 |
| AluBI | AGCT | 8 cut(s) | 55, 80, 305, 383, 616, 1073, 1289, 1346 |
| AluI | AGCT | 8 cut(s) | 55, 80, 305, 383, 616, 1073, 1289, 1346 |
| Alw21I | GWGCWC | 4 cut(s) | 82, 232, 265, 307 |
| Alw26I | GTCTC | 1 cut(s) | 65 |
| Alw44I | GTGCAC | 1 cut(s) | 228 |
| AlwI | GGATC | 2 cut(s) | 530, 917 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 46 |
| AoxI | GGCC | 6 cut(s) | 8, 251, 452, 502, 1182, 1415 |
| ApaLI | GTGCAC | 1 cut(s) | 228 |
| ApeKI | GCWGC | 2 cut(s) | 663, 1289 |
| ApoI | RAATTY | 3 cut(s) | 141, 438, 1109 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspS9I | GGNCC | 6 cut(s) | 8, 242, 251, 326, 718, 970 |
| AsuC2I | CCSGG | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 3 cut(s) | 119, 704, 1205 |
| AsuII | TTCGAA | 1 cut(s) | 850 |
| AvaII | GGWCC | 4 cut(s) | 242, 326, 718, 970 |
| BaeGI | GKGCMC | 2 cut(s) | 232, 346 |
| BalI | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| BanI | GGYRCC | 1 cut(s) | 343 |
| BanII | GRGCYC | 2 cut(s) | 82, 307 |
| Bbv12I | GWGCWC | 4 cut(s) | 82, 232, 265, 307 |
| BbvI | GCAGC | 2 cut(s) | 675, 1276 |
| BccI | CCATC | 6 cut(s) | 16, 337, 444, 507, 965, 1166 |
| BciT130I | CCWGG | 3 cut(s) | 6, 396, 1269 |
| BcnI | CCSGG | 1 cut(s) | 215 |
| BcoDI | GTCTC | 1 cut(s) | 65 |
| BcuI | ACTAGT | 1 cut(s) | 703 |
| BfaI | CTAG | 6 cut(s) | 195, 282, 380, 444, 704, 1441 |
| BfmI | CTRYAG | 1 cut(s) | 487 |
| BglII | AGATCT | 1 cut(s) | 483 |
| BisI | GCNGC | 3 cut(s) | 664, 1290, 1418 |
| BlpI | GCTNAGC | 1 cut(s) | 565 |
| BlsI | GCNGC | 3 cut(s) | 665, 1291, 1419 |
| Bme1390I | CCNGG | 4 cut(s) | 6, 215, 396, 1269 |
| Bme18I | GGWCC | 4 cut(s) | 242, 326, 718, 970 |
| BmgBI | CACGTC | 2 cut(s) | 458, 821 |
| BmgT120I | GGNCC | 6 cut(s) | 8, 242, 251, 326, 718, 970 |
| BmiI | GGNNCC | 5 cut(s) | 27, 36, 345, 719, 971 |
| BmrFI | CCNGG | 4 cut(s) | 6, 215, 396, 1269 |
| BmrI | ACTGGG | 2 cut(s) | 242, 822 |
| BmsI | GCATC | 3 cut(s) | 849, 1070, 1076 |
| BmuI | ACTGGG | 2 cut(s) | 242, 822 |
| BpmI | CTGGAG | 3 cut(s) | 378, 1209, 1374 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 565 |
| Bpu14I | TTCGAA | 1 cut(s) | 850 |
| BpuEI | CTTGAG | 3 cut(s) | 56, 231, 274 |
| BpuMI | CCSGG | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 6 cut(s) | 5, 103, 189, 338, 395, 476 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse3DI | GCAATG | 2 cut(s) | 1035, 1161 |
| BseBI | CCWGG | 3 cut(s) | 6, 396, 1269 |
| BseDI | CCNNGG | 6 cut(s) | 5, 103, 189, 338, 395, 476 |
| BseGI | GGATG | 6 cut(s) | 518, 598, 787, 1039, 1177, 1399 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMI | GCAATG | 2 cut(s) | 1035, 1161 |
| BseMII | CTCAG | 5 cut(s) | 70, 210, 579, 915, 1145 |
| BseSI | GKGCMC | 2 cut(s) | 232, 346 |
| BseXI | GCAGC | 2 cut(s) | 675, 1276 |
| BsgI | GTGCAG | 1 cut(s) | 318 |
| Bsh1236I | CGCG | 2 cut(s) | 84, 240 |
| BshFI | GGCC | 6 cut(s) | 10, 253, 454, 504, 1184, 1417 |
| BshNI | GGYRCC | 1 cut(s) | 343 |
| BsiHKAI | GWGCWC | 4 cut(s) | 82, 232, 265, 307 |
| BsiSI | CCGG | 1 cut(s) | 214 |
| BslFI | GGGAC | 4 cut(s) | 731, 831, 894, 983 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 1 cut(s) | 65 |
| BsmFI | GGGAC | 4 cut(s) | 731, 831, 894, 983 |
| BsnI | GGCC | 6 cut(s) | 10, 253, 454, 504, 1184, 1417 |
| Bsp119I | TTCGAA | 1 cut(s) | 850 |
| Bsp1286I | GDGCHC | 5 cut(s) | 82, 232, 265, 307, 346 |
| Bsp1407I | TGTACA | 1 cut(s) | 1261 |
| Bsp143I | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 565 |
| Bsp19I | CCATGG | 2 cut(s) | 103, 189 |
| Bsp68I | TCGCGA | 1 cut(s) | 84 |
| BspACI | CCGC | 5 cut(s) | 206, 211, 240, 1230, 1418 |
| BspANI | GGCC | 6 cut(s) | 10, 253, 454, 504, 1184, 1417 |
| BspCNI | CTCAG | 5 cut(s) | 69, 211, 578, 914, 1144 |
| BspFNI | CGCG | 2 cut(s) | 84, 240 |
| BspHI | TCATGA | 1 cut(s) | 946 |
| BspLI | GGNNCC | 5 cut(s) | 27, 36, 345, 719, 971 |
| BspPI | GGATC | 2 cut(s) | 530, 917 |
| BspQI | GCTCTTC | 2 cut(s) | 789, 1220 |
| BspT104I | TTCGAA | 1 cut(s) | 850 |
| BspT107I | GGYRCC | 1 cut(s) | 343 |
| BsrBI | CCGCTC | 1 cut(s) | 1230 |
| BsrDI | GCAATG | 2 cut(s) | 1035, 1161 |
| BsrGI | TGTACA | 1 cut(s) | 1261 |
| BssECI | CCNNGG | 6 cut(s) | 5, 103, 189, 338, 395, 476 |
| BssMI | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| BssT1I | CCWWGG | 4 cut(s) | 103, 189, 338, 476 |
| Bst2UI | CCWGG | 3 cut(s) | 6, 396, 1269 |
| Bst4CI | ACNGT | 3 cut(s) | 42, 895, 1437 |
| Bst6I | CTCTTC | 3 cut(s) | 95, 789, 1220 |
| BstAUI | TGTACA | 1 cut(s) | 1261 |
| BstBI | TTCGAA | 1 cut(s) | 850 |
| BstC8I | GCNNGC | 5 cut(s) | 78, 82, 471, 668, 1026 |
| BstDEI | CTNAG | 7 cut(s) | 16, 56, 219, 565, 761, 901, 1131 |
| BstDSI | CCRYGG | 2 cut(s) | 103, 189 |
| BstF5I | GGATG | 6 cut(s) | 518, 598, 787, 1039, 1177, 1399 |
| BstFNI | CGCG | 2 cut(s) | 84, 240 |
| BstKTI | GATC | 7 cut(s) | 88, 486, 524, 538, 574, 925, 1359 |
| BstMAI | GTCTC | 1 cut(s) | 65 |
| BstMBI | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 34, 43, 52, 311, 341, 389, 1132, 1298 |
| BstNI | CCWGG | 3 cut(s) | 6, 396, 1269 |
| BstNSI | RCATGY | 2 cut(s) | 473, 1126 |
| BstSCI | CCNGG | 4 cut(s) | 4, 213, 394, 1267 |
| BstSFI | CTRYAG | 1 cut(s) | 487 |
| BstSLI | GKGCMC | 2 cut(s) | 232, 346 |
| BstUI | CGCG | 2 cut(s) | 84, 240 |
| BstV1I | GCAGC | 2 cut(s) | 675, 1276 |
| BstX2I | RGATCY | 2 cut(s) | 483, 922 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 232 |
| BstYI | RGATCY | 2 cut(s) | 483, 922 |
| BsuRI | GGCC | 6 cut(s) | 10, 253, 454, 504, 1184, 1417 |
| BtgI | CCRYGG | 2 cut(s) | 103, 189 |
| BtrI | CACGTC | 2 cut(s) | 458, 821 |
| BtsCI | GGATG | 6 cut(s) | 518, 598, 787, 1039, 1177, 1399 |
| BtsIMutI | CAGTG | 9 cut(s) | 36, 230, 232, 265, 558, 620, 1185, 1274, 1317 |
| BtuMI | TCGCGA | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 5 cut(s) | 78, 82, 471, 668, 1026 |
| CaiI | CAGNNNCTG | 1 cut(s) | 46 |
| CciI | TCATGA | 1 cut(s) | 946 |
| Cfr13I | GGNCC | 6 cut(s) | 8, 242, 251, 326, 718, 970 |
| Csp6I | GTAC | 7 cut(s) | 147, 172, 294, 518, 576, 1262, 1323 |
| CviAII | CATG | 8 cut(s) | 104, 190, 470, 752, 869, 884, 947, 1123 |
| CviQI | GTAC | 7 cut(s) | 147, 172, 294, 518, 576, 1262, 1323 |
| DdeI | CTNAG | 7 cut(s) | 16, 56, 219, 565, 761, 901, 1131 |
| DpnI | GATC | 7 cut(s) | 87, 485, 523, 537, 573, 924, 1358 |
| DpnII | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| EaeI | YGGCCR | 3 cut(s) | 452, 502, 1182 |
| Eam1104I | CTCTTC | 3 cut(s) | 95, 789, 1220 |
| EarI | CTCTTC | 3 cut(s) | 95, 789, 1220 |
| Ecl136II | GAGCTC | 2 cut(s) | 80, 305 |
| Eco130I | CCWWGG | 4 cut(s) | 103, 189, 338, 476 |
| Eco24I | GRGCYC | 2 cut(s) | 82, 307 |
| Eco47I | GGWCC | 4 cut(s) | 242, 326, 718, 970 |
| Eco53kI | GAGCTC | 2 cut(s) | 80, 305 |
| Eco57I | CTGAAG | 1 cut(s) | 1396 |
| EcoICRI | GAGCTC | 2 cut(s) | 80, 305 |
| EcoO109I | RGGNCCY | 3 cut(s) | 251, 718, 970 |
| EcoRI | GAATTC | 2 cut(s) | 141, 438 |
| EcoRII | CCWGG | 3 cut(s) | 4, 394, 1267 |
| EcoT14I | CCWWGG | 4 cut(s) | 103, 189, 338, 476 |
| EcoT22I | ATGCAT | 1 cut(s) | 874 |
| EcoT38I | GRGCYC | 2 cut(s) | 82, 307 |
| ErhI | CCWWGG | 4 cut(s) | 103, 189, 338, 476 |
| FaeI | CATG | 8 cut(s) | 107, 193, 473, 755, 872, 887, 950, 1126 |
| FaqI | GGGAC | 4 cut(s) | 731, 831, 894, 983 |
| FatI | CATG | 8 cut(s) | 103, 189, 469, 751, 868, 883, 946, 1122 |
| FauI | CCCGC | 1 cut(s) | 218 |
| Fnu4HI | GCNGC | 3 cut(s) | 664, 1290, 1418 |
| FokI | GGATG | 6 cut(s) | 525, 605, 774, 1026, 1184, 1386 |
| FriOI | GRGCYC | 2 cut(s) | 82, 307 |
| Fsp4HI | GCNGC | 3 cut(s) | 664, 1290, 1418 |
| FspBI | CTAG | 6 cut(s) | 195, 282, 380, 444, 704, 1441 |
| GluI | GCNGC | 3 cut(s) | 664, 1290, 1418 |
| GsuI | CTGGAG | 3 cut(s) | 378, 1209, 1374 |
| HaeIII | GGCC | 6 cut(s) | 10, 253, 454, 504, 1184, 1417 |
| HapII | CCGG | 1 cut(s) | 214 |
| Hin1II | CATG | 8 cut(s) | 107, 193, 473, 755, 872, 887, 950, 1126 |
| HincII | GTYRAC | 1 cut(s) | 996 |
| HindII | GTYRAC | 1 cut(s) | 996 |
| HinfI | GANTC | 4 cut(s) | 221, 278, 824, 950 |
| HpaII | CCGG | 1 cut(s) | 214 |
| HphI | GGTGA | 3 cut(s) | 119, 704, 1205 |
| Hpy166II | GTNNAC | 4 cut(s) | 110, 230, 772, 996 |
| Hpy188I | TCNGA | 1 cut(s) | 406 |
| Hpy188III | TCNNGA | 8 cut(s) | 83, 122, 275, 583, 797, 879, 947, 1391 |
| Hpy8I | GTNNAC | 4 cut(s) | 110, 230, 772, 996 |
| Hpy99I | CGWCG | 1 cut(s) | 1437 |
| HpyAV | CCTTC | 4 cut(s) | 264, 281, 293, 1106 |
| HpyCH4III | ACNGT | 3 cut(s) | 42, 895, 1437 |
| HpyCH4IV | ACGT | 2 cut(s) | 457, 820 |
| HpyCH4V | TGCA | 9 cut(s) | 230, 335, 558, 834, 862, 872, 1028, 1061, 1067 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 34, 43, 52, 311, 341, 389, 1132, 1298 |
| HpyF3I | CTNAG | 7 cut(s) | 16, 56, 219, 565, 761, 901, 1131 |
| HpySE526I | ACGT | 2 cut(s) | 457, 820 |
| Hsp92II | CATG | 8 cut(s) | 107, 193, 473, 755, 872, 887, 950, 1126 |
| Kzo9I | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| LguI | GCTCTTC | 2 cut(s) | 789, 1220 |
| LmnI | GCTCC | 5 cut(s) | 25, 34, 302, 397, 478 |
| Lsp1109I | GCAGC | 2 cut(s) | 675, 1276 |
| LweI | GCATC | 3 cut(s) | 849, 1070, 1076 |
| MaeI | CTAG | 6 cut(s) | 195, 282, 380, 444, 704, 1441 |
| MaeII | ACGT | 2 cut(s) | 457, 820 |
| MaeIII | GTNAC | 2 cut(s) | 1193, 1315 |
| MalI | GATC | 7 cut(s) | 87, 485, 523, 537, 573, 924, 1358 |
| MbiI | CCGCTC | 1 cut(s) | 1230 |
| MboI | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| MboII | GAAGA | 4 cut(s) | 82, 493, 776, 1237 |
| MfeI | CAATTG | 1 cut(s) | 1257 |
| MflI | RGATCY | 2 cut(s) | 483, 922 |
| MhlI | GDGCHC | 5 cut(s) | 82, 232, 265, 307, 346 |
| MlsI | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| MluCI | AATT | 8 cut(s) | 141, 180, 438, 1051, 1109, 1146, 1237, 1257 |
| MluNI | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| MlyI | GAGTC | 2 cut(s) | 230, 944 |
| Mox20I | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| Mph1103I | ATGCAT | 1 cut(s) | 874 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MscI | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| MseI | TTAA | 4 cut(s) | 428, 708, 1083, 1149 |
| MslI | CAYNNNNRTG | 1 cut(s) | 762 |
| Msp20I | TGGCCA | 3 cut(s) | 454, 504, 1184 |
| MspA1I | CMGCKG | 1 cut(s) | 1073 |
| MspI | CCGG | 1 cut(s) | 214 |
| MspR9I | CCNGG | 4 cut(s) | 6, 215, 396, 1269 |
| MunI | CAATTG | 1 cut(s) | 1257 |
| MvaI | CCWGG | 3 cut(s) | 6, 396, 1269 |
| MvnI | CGCG | 2 cut(s) | 84, 240 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 34, 43, 52, 311, 341, 389, 1132, 1298 |
| NciI | CCSGG | 1 cut(s) | 215 |
| NcoI | CCATGG | 2 cut(s) | 103, 189 |
| NdeII | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| NlaIII | CATG | 8 cut(s) | 107, 193, 473, 755, 872, 887, 950, 1126 |
| NlaIV | GGNNCC | 5 cut(s) | 27, 36, 345, 719, 971 |
| NmuCI | GTSAC | 2 cut(s) | 1193, 1315 |
| NruI | TCGCGA | 1 cut(s) | 84 |
| NsiI | ATGCAT | 1 cut(s) | 874 |
| NspI | RCATGY | 2 cut(s) | 473, 1126 |
| NspV | TTCGAA | 1 cut(s) | 850 |
| PaeI | GCATGC | 1 cut(s) | 473 |
| PagI | TCATGA | 1 cut(s) | 946 |
| PciSI | GCTCTTC | 2 cut(s) | 789, 1220 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 2 cut(s) | 278, 824 |
| PkrI | GCNGC | 3 cut(s) | 665, 1291, 1419 |
| PleI | GAGTC | 2 cut(s) | 229, 944 |
| PpsI | GAGTC | 2 cut(s) | 229, 944 |
| PpuMI | RGGWCCY | 2 cut(s) | 718, 970 |
| Psp124BI | GAGCTC | 2 cut(s) | 82, 307 |
| Psp5II | RGGWCCY | 2 cut(s) | 718, 970 |
| Psp6I | CCWGG | 3 cut(s) | 4, 394, 1267 |
| PspGI | CCWGG | 3 cut(s) | 4, 394, 1267 |
| PspN4I | GGNNCC | 5 cut(s) | 27, 36, 345, 719, 971 |
| PspPI | GGNCC | 6 cut(s) | 8, 242, 251, 326, 718, 970 |
| PspPPI | RGGWCCY | 2 cut(s) | 718, 970 |
| PstNI | CAGNNNCTG | 1 cut(s) | 46 |
| PsuI | RGATCY | 2 cut(s) | 483, 922 |
| PvuII | CAGCTG | 1 cut(s) | 1073 |
| RruI | TCGCGA | 1 cut(s) | 84 |
| RsaI | GTAC | 7 cut(s) | 148, 173, 295, 519, 577, 1263, 1324 |
| RsaNI | GTAC | 7 cut(s) | 147, 172, 294, 518, 576, 1262, 1323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 762 |
| SacI | GAGCTC | 2 cut(s) | 82, 307 |
| SapI | GCTCTTC | 2 cut(s) | 789, 1220 |
| SaqAI | TTAA | 4 cut(s) | 428, 708, 1083, 1149 |
| SatI | GCNGC | 3 cut(s) | 664, 1290, 1418 |
| Sau3AI | GATC | 7 cut(s) | 85, 483, 521, 535, 571, 922, 1356 |
| Sau96I | GGNCC | 6 cut(s) | 8, 242, 251, 326, 718, 970 |
| SchI | GAGTC | 2 cut(s) | 230, 944 |
| ScrFI | CCNGG | 4 cut(s) | 6, 215, 396, 1269 |
| SduI | GDGCHC | 5 cut(s) | 82, 232, 265, 307, 346 |
| SfaNI | GCATC | 3 cut(s) | 849, 1070, 1076 |
| SfcI | CTRYAG | 1 cut(s) | 487 |
| SfuI | TTCGAA | 1 cut(s) | 850 |
| SinI | GGWCC | 4 cut(s) | 242, 326, 718, 970 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 762 |
| SmlI | CTYRAG | 3 cut(s) | 71, 246, 289 |
| SmoI | CTYRAG | 3 cut(s) | 71, 246, 289 |
| SpeI | ACTAGT | 1 cut(s) | 703 |
| SphI | GCATGC | 1 cut(s) | 473 |
| Sse9I | AATT | 8 cut(s) | 141, 180, 438, 1051, 1109, 1146, 1237, 1257 |
| SsiI | CCGC | 5 cut(s) | 206, 211, 240, 1230, 1418 |
| SspMI | CTAG | 6 cut(s) | 195, 282, 380, 444, 704, 1441 |
| SstI | GAGCTC | 2 cut(s) | 82, 307 |
| StyD4I | CCNGG | 4 cut(s) | 4, 213, 394, 1267 |
| StyI | CCWWGG | 4 cut(s) | 103, 189, 338, 476 |
| TaaI | ACNGT | 3 cut(s) | 42, 895, 1437 |
| TaiI | ACGT | 2 cut(s) | 460, 823 |
| TaqI | TCGA | 3 cut(s) | 850, 913, 1432 |
| TasI | AATT | 8 cut(s) | 141, 180, 438, 1051, 1109, 1146, 1237, 1257 |
| TatI | WGTACW | 1 cut(s) | 1261 |
| TauI | GCSGC | 1 cut(s) | 1420 |
| TfiI | GAWTC | 2 cut(s) | 278, 824 |
| Tru1I | TTAA | 4 cut(s) | 428, 708, 1083, 1149 |
| Tru9I | TTAA | 4 cut(s) | 428, 708, 1083, 1149 |
| TscAI | CASTG | 9 cut(s) | 36, 232, 237, 265, 565, 627, 1192, 1281, 1324 |
| TseFI | GTSAC | 2 cut(s) | 1193, 1315 |
| TseI | GCWGC | 2 cut(s) | 663, 1289 |
| Tsp45I | GTSAC | 2 cut(s) | 1193, 1315 |
| TspDTI | ATGAA | 3 cut(s) | 735, 776, 857 |
| TspGWI | ACGGA | 3 cut(s) | 189, 311, 731 |
| TspRI | CASTG | 9 cut(s) | 36, 232, 237, 265, 565, 627, 1192, 1281, 1324 |
| VneI | GTGCAC | 1 cut(s) | 228 |
| VpaK11BI | GGWCC | 4 cut(s) | 242, 326, 718, 970 |
| XapI | RAATTY | 3 cut(s) | 141, 438, 1109 |
| XceI | RCATGY | 2 cut(s) | 473, 1126 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 462, 546 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 6 cut(s) | 195, 282, 380, 444, 704, 1441 |
| Zsp2I | ATGCAT | 1 cut(s) | 874 |