Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002996

Physical Location & Seq

Genomic Coordinates Forward (+)

28254993 .. 28256018

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTTAATGGAAAGAACTCCAGGCAGATGGCCACGTCCTGTTTGGCATGCTCCTTGGAAGATGTACAAGGTCATTAGCGGCCACTTGGGATGGGTACGATCCATTGCCTTTGATCCAAGCAACAAATGGTTCTGCACCGGCTCTGCAGATCGCACGATCAAGATATGGGATGTAGGAACCGGAACCCTACAGCTCTCACTGACAAGACACATTGAACAAGTACGAGGACTTGCTGTTAGCAGCAGGCACACCTACATGTTCTCTGCCGGCGATGACAAGCTGGTTAAATGCTGGGACCTCGAACAGAACAAGGTTGTCCGTTCATATCATGGTCATCTGAGCGGTGTTTACTGCTTGGCGGTTCATCCCACGCTTGATATTTTACTCACCGGTGGACGCGATTCTGTGTGCCGGGTTTGGGATATTCGAAGCAAGGTGCAAGTTTTTGCATTGTCGGGGCATGACGACACAGTTTGCTCAGTTTTCACTCGACCGACAGATCCACAAGTTGTCACTGGCTCTCATGACTCGACCATCAAGCTCTGGGACTTGAGGTATGGGAAAACAATGTCAACACTTACACACCATAAGAAATCTGTGCGTGCAATGGCGCAACATCCTAAGGATATCAATTCTTTCGCATCTGTATCCGCTGACAACGTGAAGAAGTTCAACTTTCCGAACGGCGAATTTTTGCACAACATGCTGTCTCAGCAGAAAACTATAGTTAATGCAATGGCTGTGAATCGGGATGGTGTCATGGCAACTGGAGGTGACAGTGGGAGTGTGTGGTTTTGGGATTGGAAGAGCGGTCATAATTTTCAACAATCGCAAACAATTGCGCAGCCTGGCTCCCTGGATGGTGAAGCTGCTGTATATGCTCTTTCCTTTGATAGAACTGGTACAAGGTTGGTGACTTGCGGAGCTGATAAGACGATCAAAATGTGGAAAAAGGACCAAAATGCCACTCCAGAAACCCATCCTCTCAATTTCAAGCCTCCTAAAGATATTCGACGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

342

Amino Acids

38.4

Weight (kDa)

9.53

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16650 AT4G15900
fragaria_vesca	FvH4_4g18400 FvH4_4g23450
malus_domestica	MD00G1128100.v1.1 MD00G1184900.v1.1 MD05G1262800.v1.1 MD16G1081900.v1.1 MD16G1167100.v1.1
prunus_persica	Prupe.1G134100_v2.0.a1 Prupe.1G134100_v2.0.a1 Prupe.6G318200_v2.0.a1
pyrus_communis	pycom06g06670 pycom13g14280 pycom16g14110
rosa_chinensis	RchiOBHm_Chr4g0422851 RchiOBHm_Chr4g0429811 RchiOBHm_Chr4g0429821
rosa_laevigata	RLG00000007041 RLG00000007600
rosa_multiflora	Rmu_co8144486.1_g000001 Rmu_co8520863.1_g000001 Rmu_sc0000830.1_g000042 Rmu_sc0006762.1_g000001 Rmu_sc0021868.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364710 Rroxscaffold_5G00371580
rosa_rugosa	Rorug04G0181800 Rorug04G0238500
rosa_samantha	Rh4AG242200 Rh4BG245800 Rh4BG300800 Rh4BG300900 Rh4CG256100 Rh4DG240800 Rh4DG297900
rosa_wichuraiana	Rw4G020860 Rw4G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	846
AccBSI	CCGCTC	2 cut(s)	345, 813
AccII	CGCG	1 cut(s)	402
AciI	CCGC	6 cut(s)	81, 345, 362, 654, 813, 924
AclWI	GGATC	3 cut(s)	96, 110, 497
AcoI	YGGCCR	2 cut(s)	32, 82
AcsI	RAATTY	1 cut(s)	692
AfaI	GTAC	4 cut(s)	68, 99, 225, 907
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	258
AgeI	ACCGGT	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	218, 676, 827, 997
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	3 cut(s)	22, 850, 858
AluBI	AGCT	5 cut(s)	196, 283, 544, 872, 929
AluI	AGCT	5 cut(s)	196, 283, 544, 872, 929
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	3 cut(s)	96, 110, 497
AoxI	GGCC	2 cut(s)	32, 82
ApeKI	GCWGC	3 cut(s)	243, 847, 872
ApoI	RAATTY	1 cut(s)	692
AsiGI	ACCGGT	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	616, 847
AspS9I	GGNCC	2 cut(s)	298, 958
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	4 cut(s)	382, 788, 878, 928
AsuII	TTCGAA	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	298, 958
AxyI	CCTNAGG	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	255, 859, 859
BccI	CCATC	6 cut(s)	24, 87, 545, 749, 857, 990
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	3 cut(s)	24, 852, 860
BciVI	GTATCC	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	1024
BfmI	CTRYAG	3 cut(s)	147, 191, 726
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	4 cut(s)	82, 244, 848, 873
BlsI	GCNGC	4 cut(s)	83, 245, 849, 874
Bme1390I	CCNGG	4 cut(s)	24, 416, 852, 860
Bme18I	GGWCC	2 cut(s)	298, 958
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	298, 958
BmiI	GGNNCC	4 cut(s)	181, 187, 299, 856
BmrFI	CCNGG	4 cut(s)	24, 416, 852, 860
BmsI	GCATC	1 cut(s)	653
BpmI	CTGGAG	3 cut(s)	6, 792, 957
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	56, 858
BsaWI	WCCGGW	2 cut(s)	182, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	3 cut(s)	140, 269, 392
Bse1I	ACTGG	3 cut(s)	523, 775, 907
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	3 cut(s)	105, 615, 744
BseBI	CCWGG	3 cut(s)	24, 852, 860
BseDI	CCNNGG	2 cut(s)	56, 858
BseGI	GGATG	7 cut(s)	98, 178, 367, 619, 760, 868, 982
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	3 cut(s)	105, 615, 744
BseMII	CTCAG	3 cut(s)	332, 495, 728
BseNI	ACTGG	3 cut(s)	523, 775, 907
BseXI	GCAGC	3 cut(s)	255, 859, 859
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	34, 84
BshTI	ACCGGT	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	141, 183, 270, 393, 415
BslFI	GGGAC	2 cut(s)	311, 563
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	2 cut(s)	311, 563
BsnI	GGCC	2 cut(s)	34, 84
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
BspACI	CCGC	6 cut(s)	81, 345, 362, 654, 813, 924
BspANI	GGCC	2 cut(s)	34, 84
BspCNI	CTCAG	3 cut(s)	333, 494, 727
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	181, 187, 299, 856
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	3 cut(s)	96, 110, 497
BspQI	GCTCTTC	1 cut(s)	803
BspT104I	TTCGAA	1 cut(s)	430
BsrBI	CCGCTC	2 cut(s)	345, 813
BsrDI	GCAATG	3 cut(s)	105, 615, 744
BsrFI	RCCGGY	3 cut(s)	140, 269, 392
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	523, 775, 907
BssAI	RCCGGY	3 cut(s)	140, 269, 392
BssECI	CCNNGG	2 cut(s)	56, 858
BssMI	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	3 cut(s)	24, 852, 860
Bst4CI	ACNGT	3 cut(s)	475, 782, 1020
Bst6I	CTCTTC	1 cut(s)	803
BstAPI	GCANNNNNTGC	1 cut(s)	706
BstAUI	TGTACA	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	4 cut(s)	51, 248, 271, 606
BstDEI	CTNAG	4 cut(s)	341, 481, 624, 714
BstF5I	GGATG	7 cut(s)	98, 178, 367, 619, 760, 868, 982
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	616, 847
BstKTI	GATC	6 cut(s)	104, 118, 154, 162, 505, 942
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	3 cut(s)	706, 715, 881
BstNI	CCWGG	3 cut(s)	24, 852, 860
BstNSI	RCATGY	3 cut(s)	53, 262, 709
BstSCI	CCNGG	4 cut(s)	22, 414, 850, 858
BstSFI	CTRYAG	3 cut(s)	147, 191, 726
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	3 cut(s)	255, 859, 859
BstX2I	RGATCY	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	502
Bsu36I	CCTNAGG	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	34, 84
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	7 cut(s)	98, 178, 367, 619, 760, 868, 982
BtsIMutI	CAGTG	3 cut(s)	200, 516, 787
Cac8I	GCNNGC	4 cut(s)	51, 248, 271, 606
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	616, 847
Cfr10I	RCCGGY	3 cut(s)	140, 269, 392
Cfr13I	GGNCC	2 cut(s)	298, 958
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	67, 98, 224, 906
CspAI	ACCGGT	1 cut(s)	392
CviAII	CATG	7 cut(s)	50, 259, 332, 464, 527, 706, 763
CviQI	GTAC	4 cut(s)	67, 98, 224, 906
DdeI	CTNAG	4 cut(s)	341, 481, 624, 714
DpnI	GATC	6 cut(s)	103, 117, 153, 161, 504, 941
DpnII	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
EaeI	YGGCCR	2 cut(s)	32, 82
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	298, 958
Eco81I	CCTNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	22, 850, 858
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	7 cut(s)	53, 262, 335, 467, 530, 709, 766
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	2 cut(s)	311, 563
FatI	CATG	7 cut(s)	49, 258, 331, 463, 526, 705, 762
Fnu4HI	GCNGC	4 cut(s)	82, 244, 848, 873
FokI	GGATG	7 cut(s)	105, 185, 354, 606, 767, 875, 969
Fsp4HI	GCNGC	4 cut(s)	82, 244, 848, 873
FspBI	CTAG	1 cut(s)	1024
FspI	TGCGCA	1 cut(s)	846
GlaI	GCGC	2 cut(s)	615, 846
GluI	GCNGC	4 cut(s)	82, 244, 848, 873
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	3 cut(s)	6, 792, 957
HaeIII	GGCC	2 cut(s)	34, 84
HapII	CCGG	5 cut(s)	141, 183, 270, 393, 415
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	2 cut(s)	616, 847
Hin1II	CATG	7 cut(s)	53, 262, 335, 467, 530, 709, 766
Hin6I	GCGC	2 cut(s)	614, 845
HinP1I	GCGC	2 cut(s)	614, 845
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	3 cut(s)	404, 530, 748
HpaII	CCGG	5 cut(s)	141, 183, 270, 393, 415
HphI	GGTGA	4 cut(s)	382, 788, 878, 928
Hpy166II	GTNNAC	3 cut(s)	352, 398, 576
Hpy188I	TCNGA	2 cut(s)	342, 684
Hpy188III	TCNNGA	4 cut(s)	163, 527, 752, 974
Hpy8I	GTNNAC	3 cut(s)	352, 398, 576
Hpy99I	CGWCG	1 cut(s)	1020
HpyCH4III	ACNGT	3 cut(s)	475, 782, 1020
HpyCH4IV	ACGT	2 cut(s)	37, 663
HpyCH4V	TGCA	7 cut(s)	138, 149, 442, 452, 608, 700, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	706, 715, 881
HpyF3I	CTNAG	4 cut(s)	341, 481, 624, 714
HpySE526I	ACGT	2 cut(s)	37, 663
Hsp92II	CATG	7 cut(s)	53, 262, 335, 467, 530, 709, 766
HspAI	GCGC	2 cut(s)	614, 845
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
LguI	GCTCTTC	1 cut(s)	803
LmnI	GCTCC	3 cut(s)	58, 860, 926
Lsp1109I	GCAGC	3 cut(s)	255, 859, 859
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	1 cut(s)	1024
MaeII	ACGT	2 cut(s)	37, 663
MaeIII	GTNAC	3 cut(s)	514, 776, 916
MalI	GATC	6 cut(s)	103, 117, 153, 161, 504, 941
MbiI	CCGCTC	2 cut(s)	345, 813
MboI	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
MboII	GAAGA	3 cut(s)	73, 679, 820
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	5 cut(s)	634, 692, 820, 840, 991
MluNI	TGGCCA	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	6 cut(s)	221, 311, 549, 767, 996, 1011
Mox20I	TGGCCA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	3 cut(s)	8, 288, 732
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	5 cut(s)	141, 183, 270, 393, 415
MspR9I	CCNGG	4 cut(s)	24, 416, 852, 860
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	24, 852, 860
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	706, 715, 881
NaeI	GCCGGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	7 cut(s)	53, 262, 335, 467, 530, 709, 766
NlaIV	GGNNCC	4 cut(s)	181, 187, 299, 856
NmuCI	GTSAC	3 cut(s)	514, 776, 916
NsbI	TGCGCA	1 cut(s)	846
NspI	RCATGY	3 cut(s)	53, 262, 709
NspV	TTCGAA	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	526
PciI	ACATGT	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	803
PdiI	GCCGGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	404, 748
PinAI	ACCGGT	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	83, 245, 849, 874
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	298
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	22, 850, 858
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	3 cut(s)	22, 850, 858
PspN4I	GGNNCC	4 cut(s)	181, 187, 299, 856
PspPI	GGNCC	2 cut(s)	298, 958
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	4 cut(s)	68, 99, 225, 907
RsaNI	GTAC	4 cut(s)	67, 98, 224, 906
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	803
SaqAI	TTAA	3 cut(s)	8, 288, 732
SatI	GCNGC	4 cut(s)	82, 244, 848, 873
Sau3AI	GATC	6 cut(s)	101, 115, 151, 159, 502, 939
Sau96I	GGNCC	2 cut(s)	298, 958
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	4 cut(s)	24, 416, 852, 860
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	3 cut(s)	147, 191, 726
SfuI	TTCGAA	1 cut(s)	430
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	298, 958
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	5 cut(s)	634, 692, 820, 840, 991
SsiI	CCGC	6 cut(s)	81, 345, 362, 654, 813, 924
SspMI	CTAG	1 cut(s)	1024
StyD4I	CCNGG	4 cut(s)	22, 414, 850, 858
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	3 cut(s)	475, 782, 1020
TaiI	ACGT	2 cut(s)	40, 666
TaqI	TCGA	5 cut(s)	303, 430, 493, 533, 1015
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	5 cut(s)	634, 692, 820, 840, 991
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	404, 748
Tru1I	TTAA	3 cut(s)	8, 288, 732
Tru9I	TTAA	3 cut(s)	8, 288, 732
TscAI	CASTG	3 cut(s)	207, 523, 787
TseFI	GTSAC	3 cut(s)	514, 776, 916
TseI	GCWGC	3 cut(s)	243, 847, 872
Tsp45I	GTSAC	3 cut(s)	514, 776, 916
TspDTI	ATGAA	2 cut(s)	315, 356
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	207, 523, 787
VpaK11BI	GGWCC	2 cut(s)	298, 958
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	3 cut(s)	53, 262, 709
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 126
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.