Rh4BG300900

Protein pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002996
Physical Location & Seq
Forward (+)
47193996 .. 47194283
288 bp
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UTR
Exon/CDS
Intron
Rh4BG300900.1

Sequence Viewer

Length: 288 bp
ATGGCGGTCAATGGCGATGGAGTTATGGCCACCGGAGATGACAGTGGGAGTTTGTGGTTTTGGGATTGGGAGAGTTGCCATAATTATCAGCAATCCCAAACAACTGTACAGCCAGGTTCACTGAATAGTGAAGCTGGTATTTGTGCTCTTTCTTATGATGTCACTGGCACAAGGCTAGTTACTTGTGGAGCTGACAAGACGATCAAAATGTGGAAACAAGACGAAGATGCCACACCAGAAACTCATCCTCTCAATTTCAGTCCGCCTAAAGATATCCGGCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

95

Amino Acids

10.46

Weight (kDa)

4.54

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 45 - 83 4.6e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AciI CCGC 2 cut(s) 5, 263
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 134, 191
AluI AGCT 2 cut(s) 134, 191
Alw21I GWGCWC 1 cut(s) 148
AoxI GGCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 114
BfaI CTAG 2 cut(s) 176, 286
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 169
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 33, 277
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 2 cut(s) 5, 263
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 44, 106
BstAUI TGTACA 1 cut(s) 106
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 3 cut(s) 49, 119, 162
Csp6I GTAC 1 cut(s) 107
CviJI RGCY 5 cut(s) 29, 112, 134, 175, 191
CviKI_1 RGCY 5 cut(s) 29, 112, 134, 175, 191
CviQI GTAC 1 cut(s) 107
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 1 cut(s) 252
Eco32I GATATC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 274
FaiI YATR 3 cut(s) 26, 81, 156
FokI GGATG 1 cut(s) 231
FspBI CTAG 2 cut(s) 176, 286
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 33, 277
HpaII CCGG 2 cut(s) 33, 277
Hpy166II GTNNAC 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 44, 106
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 46, 99, 120, 126, 150, 249
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 176, 286
MaeIII GTNAC 2 cut(s) 160, 178
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 82, 253
MluNI TGGCCA 1 cut(s) 29
MnlI CCTC 1 cut(s) 258
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 2 cut(s) 33, 277
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NdeII GATC 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 118, 136, 193, 285
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 2 cut(s) 82, 253
SsiI CCGC 2 cut(s) 5, 263
SspMI CTAG 2 cut(s) 176, 286
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 44, 106
TasI AATT 2 cut(s) 82, 253
TatI WGTACW 1 cut(s) 106
TscAI CASTG 3 cut(s) 49, 126, 169
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 3 cut(s) 49, 126, 169
XspI CTAG 2 cut(s) 176, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.