Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002996

Physical Location & Seq

Genomic Coordinates Forward (+)

51966827 .. 51967252

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGCCACATCCTAAGGATCAGCATTGTTTTACTTCTGTGTCAGTAGACAACATTAAGAAGTTCGGATCGTTCAACCTTCCGAGAGGGGAATTTTTACACGATATGCTAGCTCAGCAGAACACCATAGTTAACACAATGGCGGTCAATGGTGATGGAGTTATGGCCACCGGAGATGACAGTGGGAGTTTGTGGTTTTGGGATTGGGAGAGTGGCCATAATTATCAGCAATCCCAAACAACTGTACAGCCATGTTCTCTGAATAGTGAAGCTGGTATTTCTGCCCTTTCTTATGATGTCACTGGCAGAAGGCTAGTTACTTGTGAAGTTGACAAGACGATCAAAATGTGGAAACAAGACAAAAACGCCACACCAGAAACTCATCCTCTCAATTTCAGTCCGCCTAAAGATATCCGGCACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

141

Amino Acids

15.8

Weight (kDa)

5.79

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16650 AT4G15900
fragaria_vesca	FvH4_4g18400 FvH4_4g23450
malus_domestica	MD00G1128100.v1.1 MD00G1184900.v1.1 MD05G1262800.v1.1 MD16G1081900.v1.1 MD16G1167100.v1.1
prunus_persica	Prupe.1G134100_v2.0.a1 Prupe.1G134100_v2.0.a1 Prupe.6G318200_v2.0.a1
pyrus_communis	pycom06g06670 pycom13g14280 pycom16g14110
rosa_chinensis	RchiOBHm_Chr4g0422851 RchiOBHm_Chr4g0429811 RchiOBHm_Chr4g0429821
rosa_laevigata	RLG00000007041 RLG00000007600
rosa_multiflora	Rmu_co8144486.1_g000001 Rmu_co8520863.1_g000001 Rmu_sc0000830.1_g000042 Rmu_sc0006762.1_g000001 Rmu_sc0021868.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364710 Rroxscaffold_5G00371580
rosa_rugosa	Rorug04G0181800 Rorug04G0238500
rosa_samantha	Rh4AG242200 Rh4BG245800 Rh4BG300800 Rh4BG300900 Rh4CG256100 Rh4DG240800 Rh4DG297900
rosa_wichuraiana	Rw4G020860 Rw4G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 417
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	143, 401
AclWI	GGATC	2 cut(s)	27, 76
AcoI	YGGCCR	2 cut(s)	165, 214
AcsI	RAATTY	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	2 cut(s)	113, 272
AluI	AGCT	2 cut(s)	113, 272
AlwI	GGATC	2 cut(s)	27, 76
AoxI	GGCC	2 cut(s)	165, 214
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	164
AsuNHI	GCTAGC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	15
BalI	TGGCCA	2 cut(s)	167, 216
BanI	GGYRCC	2 cut(s)	4, 417
BarI	GAAGNNNNNNTAC	2 cut(s)	301, 333
BccI	CCATC	1 cut(s)	149
BfaI	CTAG	3 cut(s)	110, 314, 424
BfoI	RGCGCY	1 cut(s)	8
BlpI	GCTNAGC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	6, 419
BmtI	GCTAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	10, 382
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	167, 216
BshNI	GGYRCC	2 cut(s)	4, 417
BsiSI	CCGG	2 cut(s)	171, 415
BsnI	GGCC	2 cut(s)	167, 216
Bsp1407I	TGTACA	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	19, 68, 339
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	2 cut(s)	143, 401
BspANI	GGCC	2 cut(s)	167, 216
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	6, 419
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	27, 76
BspT107I	GGYRCC	2 cut(s)	4, 417
BsrGI	TGTACA	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	19, 68, 339
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	182, 244
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	15, 114
BstF5I	GGATG	2 cut(s)	10, 382
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	22, 71, 342
BstMBI	GATC	3 cut(s)	19, 68, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	167, 216
BtsCI	GGATG	2 cut(s)	10, 382
BtsIMutI	CAGTG	2 cut(s)	187, 300
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	6 cut(s)	113, 167, 216, 250, 272, 313
CviKI_1	RGCY	6 cut(s)	113, 167, 216, 250, 272, 313
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	15, 114
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	21, 70, 341
DpnII	GATC	3 cut(s)	19, 68, 339
EaeI	YGGCCR	2 cut(s)	165, 214
EciI	GGCGGA	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	412
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	255
FaiI	YATR	6 cut(s)	107, 128, 164, 219, 253, 294
FatI	CATG	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	1 cut(s)	369
FspBI	CTAG	3 cut(s)	110, 314, 424
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	167, 216
HapII	CCGG	2 cut(s)	171, 415
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	133, 331
HindII	GTYRAC	2 cut(s)	133, 331
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	171, 415
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	49, 133, 331
Hpy188I	TCNGA	3 cut(s)	68, 84, 261
Hpy8I	GTNNAC	3 cut(s)	49, 133, 331
HpyAV	CCTTC	2 cut(s)	89, 303
HpyCH4III	ACNGT	2 cut(s)	182, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	15, 114
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	19, 68, 339
LpnPI	CCDG	4 cut(s)	184, 258, 288, 387
MaeI	CTAG	3 cut(s)	110, 314, 424
MaeIII	GTNAC	2 cut(s)	298, 316
MalI	GATC	3 cut(s)	21, 70, 341
MboI	GATC	3 cut(s)	19, 68, 339
MlsI	TGGCCA	2 cut(s)	167, 216
MluCI	AATT	3 cut(s)	92, 220, 391
MluNI	TGGCCA	2 cut(s)	167, 216
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	80, 396
Mox20I	TGGCCA	2 cut(s)	167, 216
MscI	TGGCCA	2 cut(s)	167, 216
MseI	TTAA	2 cut(s)	57, 132
Msp20I	TGGCCA	2 cut(s)	167, 216
MspI	CCGG	2 cut(s)	171, 415
MwoI	GCNNNNNNNGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	19, 68, 339
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	255
NlaIV	GGNNCC	2 cut(s)	6, 419
NmuCI	GTSAC	1 cut(s)	298
PluTI	GGCGCC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	6, 419
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	57, 132
Sau3AI	GATC	3 cut(s)	19, 68, 339
SetI	ASST	4 cut(s)	81, 115, 274, 423
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	3 cut(s)	92, 220, 391
SsiI	CCGC	2 cut(s)	143, 401
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	110, 314, 424
TaaI	ACNGT	2 cut(s)	182, 244
TasI	AATT	3 cut(s)	92, 220, 391
TatI	WGTACW	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	57, 132
Tru9I	TTAA	2 cut(s)	57, 132
TscAI	CASTG	2 cut(s)	187, 307
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspRI	CASTG	2 cut(s)	187, 307
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	110, 314, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.