Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

7969681 .. 7970843

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGTCAAGAAGAACAACCAAAGCGGCCACAAGAGCCAGTCACTTACGGTGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGCGCCGGAGGATGCAAACATGATGCAAGCAGCGGAGACACGTGTGTTTGGCCACACTCAGAAAGGCGGTGCAGCGGCAGTCATGCAGTCTGCAGCCACTGCTAATAAACGCGGTGGCTTTGTCCATCCAGGTGACACAACTGATCTCGCCGCTGAACGAGGCGTCACAGTGGCGCAAACTGACGTCCCTGGTGCACGTGTCACAACAGAATTCGTCGGTGGACAGGTCGTTGGACAATACGTCGAGCCTAGGCCAGTGGCGACTGCGGCAGCTATGGAAGCAGAAGTTGTGGGTTTGAGTTTACAAAGTGCAATAACGATTGGAGAAGCATTGGAAGCGACTGTGCAAACCGCTGGAAACAAACCGGTGGATCAAAGCGACGCAGCAGCGATTCAAGCGGCAGAGGTTAGAGCTTGTGGCACTAATGTGATTGCTCCTGGTGGAATCGCCGCTTCTGCTCAATCAGCAGCAAATCACAACGCTACCATAGACCGTGATGAGGATAAAATCAAGCTCATTGATGTTTTGGCGGGTGCGACCGGGAAGTTAGCCGCAGATAAAGCTGTGACCAGGCAGGACGCAGAGGGAGTGGTGAGCGCTGAGCTGAGGAACAATCCTAATTTGTCTACTCACCCTGGTGGTGTAGCGGCTTCTATTACTGCCGCCGCTAGGCTTAACGAGAGAGCTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006873 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009987 GO:0010035 GO:0010038 GO:0010226 GO:0019725 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

262

Amino Acids

26.74

Weight (kDa)

4.73

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	14 - 68	6.4e-22	Seed maturation protein
SMP	PF04927	136 - 192	2.4e-21	Seed maturation protein
SMP	PF04927	201 - 260	2.3e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	719
AccII	CGCG	1 cut(s)	204
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	2 cut(s)	26, 142
AcsI	RAATTY	1 cut(s)	302
AcvI	CACGTG	2 cut(s)	134, 290
AcyI	GRCGYC	2 cut(s)	255, 276
AfeI	AGCGCT	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	592, 762
AflIII	ACRYGT	3 cut(s)	131, 133, 289
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	62, 488
AhdI	GACNNNNNGTC	1 cut(s)	332
AjnI	CCWGG	5 cut(s)	220, 280, 529, 662, 727
AleI	CACNNNNGTG	2 cut(s)	518, 729
AluBI	AGCT	6 cut(s)	365, 506, 607, 656, 697, 779
AluI	AGCT	6 cut(s)	365, 506, 607, 656, 697, 779
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	70, 122
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	471
AlwNI	CAGNNNCTG	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	691
AoxI	GGCC	3 cut(s)	26, 142, 344
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	7 cut(s)	122, 164, 185, 362, 476, 479, 560
ApoI	RAATTY	1 cut(s)	302
AsiGI	ACCGGT	1 cut(s)	457
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	3 cut(s)	97, 268, 692
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	5 cut(s)	62, 83, 236, 697, 716
AvrII	CCTAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	144
BbrPI	CACGTG	2 cut(s)	134, 290
Bbv12I	GWGCWC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	698
BbvI	GCAGC	7 cut(s)	134, 176, 197, 374, 488, 491, 572
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	5 cut(s)	222, 282, 531, 664, 729
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	70, 122
BfaI	CTAG	2 cut(s)	342, 762
BfmI	CTRYAG	2 cut(s)	90, 183
BfoI	RGCGCY	2 cut(s)	98, 693
BlnI	CCTAGG	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	693
Bme1390I	CCNGG	6 cut(s)	222, 282, 531, 634, 664, 729
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmrFI	CCNGG	6 cut(s)	222, 282, 531, 634, 664, 729
BmsI	GCATC	2 cut(s)	94, 105
Bpu10I	CCTNAGC	1 cut(s)	698
Bpu1102I	GCTNAGC	1 cut(s)	693
BpuMI	CCSGG	1 cut(s)	634
BsaAI	YACGTR	2 cut(s)	134, 290
BsaHI	GRCGYC	2 cut(s)	255, 276
BsaJI	CCNNGG	3 cut(s)	280, 341, 727
BsaWI	WCCGGW	2 cut(s)	68, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 762
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	38, 347
BseBI	CCWGG	5 cut(s)	222, 282, 531, 664, 729
BseDI	CCNNGG	3 cut(s)	280, 341, 727
BseGI	GGATG	2 cut(s)	109, 217
BseLI	CCNNNNNNNGG	2 cut(s)	592, 762
BseMII	CTCAG	3 cut(s)	164, 684, 689
BseNI	ACTGG	2 cut(s)	38, 347
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	7 cut(s)	134, 176, 197, 374, 488, 491, 572
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	28, 144, 346
BshTI	ACCGGT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	4 cut(s)	69, 98, 458, 633
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	592, 762
BsmAI	GTCTC	2 cut(s)	70, 122
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	28, 144, 346
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	235, 463
Bsp1720I	GCTNAGC	1 cut(s)	693
BspANI	GGCC	3 cut(s)	28, 144, 346
BspCNI	CTCAG	3 cut(s)	163, 685, 690
BspFNI	CGCG	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	38, 347
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	3 cut(s)	280, 341, 727
BssMI	GATC	2 cut(s)	235, 463
BssNI	GRCGYC	2 cut(s)	255, 276
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	5 cut(s)	222, 282, 531, 664, 729
Bst4CI	ACNGT	4 cut(s)	50, 262, 436, 587
BstACI	GRCGYC	2 cut(s)	255, 276
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	2 cut(s)	134, 290
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	150, 693, 698
BstF5I	GGATG	2 cut(s)	109, 217
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	2 cut(s)	98, 693
BstHHI	GCGC	3 cut(s)	97, 268, 692
BstKTI	GATC	2 cut(s)	238, 466
BstMAI	GTCTC	2 cut(s)	70, 122
BstMBI	GATC	2 cut(s)	235, 463
BstMCI	CGRYCG	1 cut(s)	633
BstNI	CCWGG	5 cut(s)	222, 282, 531, 664, 729
BstSCI	CCNGG	6 cut(s)	220, 280, 529, 632, 662, 727
BstSFI	CTRYAG	2 cut(s)	90, 183
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	7 cut(s)	134, 176, 197, 374, 488, 491, 572
BsuRI	GGCC	3 cut(s)	28, 144, 346
BtsCI	GGATG	2 cut(s)	109, 217
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 267, 354
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	3 cut(s)	97, 268, 692
Cfr10I	RCCGGY	1 cut(s)	457
CseI	GACGC	3 cut(s)	244, 482, 680
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	2 cut(s)	112, 175
DdeI	CTNAG	3 cut(s)	150, 693, 698
DpnI	GATC	2 cut(s)	237, 465
DpnII	GATC	2 cut(s)	235, 463
DriI	GACNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	26, 142
Eam1105I	GACNNNNNGTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	341
Eco47III	AGCGCT	1 cut(s)	691
Eco72I	CACGTG	2 cut(s)	134, 290
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	5 cut(s)	220, 280, 529, 662, 727
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	115, 178
FaiI	YATR	7 cut(s)	92, 113, 176, 368, 581, 785, 787
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	111, 174
FauI	CCCGC	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	719
FokI	GGATG	2 cut(s)	116, 204
FspBI	CTAG	2 cut(s)	342, 762
GlaI	GCGC	3 cut(s)	96, 267, 691
HaeII	RGCGCY	2 cut(s)	98, 693
HaeIII	GGCC	3 cut(s)	28, 144, 346
HapII	CCGG	4 cut(s)	69, 98, 458, 633
HgaI	GACGC	3 cut(s)	244, 482, 680
HhaI	GCGC	3 cut(s)	97, 268, 692
Hin1I	GRCGYC	2 cut(s)	255, 276
Hin1II	CATG	2 cut(s)	115, 178
Hin6I	GCGC	3 cut(s)	95, 266, 690
HinP1I	GCGC	3 cut(s)	95, 266, 690
HinfI	GANTC	3 cut(s)	4, 484, 537
HpaII	CCGG	4 cut(s)	69, 98, 458, 633
HphI	GGTGA	5 cut(s)	62, 83, 236, 697, 716
Hpy166II	GTNNAC	5 cut(s)	74, 287, 314, 395, 720
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	5 cut(s)	74, 287, 314, 395, 720
Hpy99I	CGWCG	3 cut(s)	311, 338, 476
HpyCH4III	ACNGT	4 cut(s)	50, 262, 436, 587
HpyCH4IV	ACGT	5 cut(s)	54, 133, 276, 289, 333
HpyCH4V	TGCA	8 cut(s)	107, 118, 164, 178, 185, 287, 404, 439
HpyF3I	CTNAG	3 cut(s)	150, 693, 698
HpySE526I	ACGT	5 cut(s)	54, 133, 276, 289, 333
Hsp92I	GRCGYC	2 cut(s)	255, 276
Hsp92II	CATG	2 cut(s)	115, 178
HspAI	GCGC	3 cut(s)	95, 266, 690
Kzo9I	GATC	2 cut(s)	235, 463
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	7 cut(s)	134, 176, 197, 374, 488, 491, 572
LweI	GCATC	2 cut(s)	94, 105
MaeI	CTAG	2 cut(s)	342, 762
MaeII	ACGT	5 cut(s)	54, 133, 276, 289, 333
MaeIII	GTNAC	6 cut(s)	40, 50, 224, 256, 292, 658
MalI	GATC	2 cut(s)	237, 465
MboI	GATC	2 cut(s)	235, 463
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	302, 712
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	94, 245, 490, 586, 670, 693
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	3 cut(s)	222, 518, 729
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	4 cut(s)	125, 167, 245, 446
MspI	CCGG	4 cut(s)	69, 98, 458, 633
MspR9I	CCNGG	6 cut(s)	222, 282, 531, 634, 664, 729
MvaI	CCWGG	5 cut(s)	222, 282, 531, 664, 729
MvnI	CGCG	1 cut(s)	204
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	2 cut(s)	235, 463
NlaIII	CATG	2 cut(s)	115, 178
NmuCI	GTSAC	6 cut(s)	40, 50, 224, 256, 292, 658
OliI	CACNNNNGTG	2 cut(s)	518, 729
PfeI	GAWTC	2 cut(s)	484, 537
PinAI	ACCGGT	1 cut(s)	457
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	2 cut(s)	134, 290
PmlI	CACGTG	2 cut(s)	134, 290
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	134, 290
Psp6I	CCWGG	5 cut(s)	220, 280, 529, 662, 727
PspCI	CACGTG	2 cut(s)	134, 290
PspGI	CCWGG	5 cut(s)	220, 280, 529, 662, 727
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	191
RseI	CAYNNNNRTG	3 cut(s)	222, 518, 729
SaqAI	TTAA	1 cut(s)	768
Sau3AI	GATC	2 cut(s)	235, 463
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	6 cut(s)	222, 282, 531, 634, 664, 729
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	94, 105
SfcI	CTRYAG	2 cut(s)	90, 183
SmiMI	CAYNNNNRTG	3 cut(s)	222, 518, 729
Sse9I	AATT	2 cut(s)	302, 712
SspMI	CTAG	2 cut(s)	342, 762
StyD4I	CCNGG	6 cut(s)	220, 280, 529, 632, 662, 727
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	4 cut(s)	50, 262, 436, 587
TaiI	ACGT	5 cut(s)	57, 136, 279, 292, 336
TaqI	TCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	302, 712
TfiI	GAWTC	2 cut(s)	484, 537
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	3 cut(s)	196, 267, 354
TseFI	GTSAC	6 cut(s)	40, 50, 224, 256, 292, 658
TseI	GCWGC	7 cut(s)	122, 164, 185, 362, 476, 479, 560
Tsp45I	GTSAC	6 cut(s)	40, 50, 224, 256, 292, 658
TspRI	CASTG	3 cut(s)	196, 267, 354
VneI	GTGCAC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	719
XspI	CTAG	2 cut(s)	342, 762
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.