Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

34173067 .. 34174459

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGCAGACCGCTGAAACCATGGTGTTGGGGCAGACCCAGAAGGGCGGTCCGGCCGCTGTCATGCAGTCAGCCGCCACCCGAAACGAGAGAGCTGGCCTCGTCCGCCACGATGAGGCTACTGATGTAGCTGGACATGAAGGTGTCACTGTTACAGAGATTGATGTCCCTGGAAGGCTAACAATCACTGAATCAGTTGGTGGACAGGTTATTGGCCAGTATGTGCAGCCAACACCGGTTACACAAGTAGCTGCGGGAGGCTTCATGCAGCAGAATGCAATAACTATAGGGGAGGCACTGGAGGCCTCGGCCCAAACAGCTGGGGATAGGCCAGTGGATCAGAGCGATGCCGCGGCAATTCAGGCTGCAGAGGTGCGAGCAACAGGCAGCAATGTGATAATTCCCGGGGGTCTGGCCGCGACGGCTCAATCTGCCGCAGCTCACAATGCGGGGACTGACAGGAAGCAAGACAAGATTAAGGTTTCTGATGTGCTCTCGGGTGCGACCGCCAAGTTACCGGCGGACAAGGCGGCAACTAGGCAGGATGCCGAAGGAGTGGTGAGTGCCGAGTTGAGGAACAACCCGGACATGACCACACGTCCAGGTGGAGTTGCGGCTTCTGTTACTGCAGCTGCCAGGCTGAACGAAAATATGAATGTGAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

222

Amino Acids

22.55

Weight (kDa)

4.95

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	1 - 32	1.5e-08	Seed maturation protein
SMP	PF04927	94 - 150	2.2e-22	Seed maturation protein
SMP	PF04927	159 - 217	1.3e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	353, 419
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	3 cut(s)	54, 214, 414
AfiI	CCNNNNNNNGG	2 cut(s)	115, 573
AflIII	ACRYGT	2 cut(s)	596, 663
AgeI	ACCGGT	1 cut(s)	235
AhdI	GACNNNNNGTC	1 cut(s)	597
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	3 cut(s)	169, 601, 635
AluBI	AGCT	6 cut(s)	95, 131, 251, 320, 440, 632
AluI	AGCT	6 cut(s)	95, 131, 251, 320, 440, 632
Alw21I	GWGCWC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	2 cut(s)	404, 496
AoxI	GGCC	7 cut(s)	54, 97, 214, 303, 309, 329, 414
ApeKI	GCWGC	8 cut(s)	226, 251, 268, 365, 387, 437, 629, 632
AsiGI	ACCGGT	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	50, 310
AsuC2I	CCSGG	3 cut(s)	405, 406, 584
AsuHPI	GGTGA	1 cut(s)	571
AvaI	CYCGRG	2 cut(s)	404, 496
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	8 cut(s)	238, 238, 280, 352, 399, 449, 619, 641
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	3 cut(s)	171, 603, 637
BcnI	CCSGG	3 cut(s)	405, 406, 584
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	3 cut(s)	285, 366, 627
BglI	GCCNNNNNGGC	1 cut(s)	422
Bme1390I	CCNGG	6 cut(s)	171, 405, 406, 584, 603, 637
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmeT110I	CYCGRG	2 cut(s)	404, 496
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	50, 310
BmrFI	CCNGG	6 cut(s)	171, 405, 406, 584, 603, 637
BmsI	GCATC	2 cut(s)	337, 535
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	1 cut(s)	320
BpuMI	CCSGG	3 cut(s)	405, 406, 584
BsaAI	YACGTR	1 cut(s)	666
BsaJI	CCNNGG	6 cut(s)	21, 169, 306, 351, 404, 405
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 573
Bse118I	RCCGGY	2 cut(s)	235, 517
Bse1I	ACTGG	3 cut(s)	217, 303, 332
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	3 cut(s)	171, 603, 637
BseDI	CCNNGG	6 cut(s)	21, 169, 306, 351, 404, 405
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	115, 573
BseMI	GCAATG	1 cut(s)	397
BseNI	ACTGG	3 cut(s)	217, 303, 332
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	8 cut(s)	238, 238, 280, 352, 399, 449, 619, 641
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	353, 419
Bsh1285I	CGRYCG	2 cut(s)	57, 507
BshFI	GGCC	7 cut(s)	56, 99, 216, 305, 311, 331, 416
BshTI	ACCGGT	1 cut(s)	235
BsiEI	CGRYCG	2 cut(s)	57, 507
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	2 cut(s)	404, 496
BsiSI	CCGG	5 cut(s)	53, 236, 405, 518, 584
BslFI	GGGAC	2 cut(s)	152, 466
BslI	CCNNNNNNNGG	2 cut(s)	115, 573
BsmFI	GGGAC	2 cut(s)	152, 466
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	7 cut(s)	56, 99, 216, 305, 311, 331, 416
BsoBI	CYCGRG	2 cut(s)	404, 496
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	7 cut(s)	56, 99, 216, 305, 311, 331, 416
BspFNI	CGCG	2 cut(s)	353, 419
BspMAI	CTGCAG	2 cut(s)	370, 631
BspPI	GGATC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	2 cut(s)	235, 517
BsrI	ACTGG	3 cut(s)	217, 303, 332
BssAI	RCCGGY	2 cut(s)	235, 517
BssECI	CCNNGG	6 cut(s)	21, 169, 306, 351, 404, 405
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	171, 603, 637
Bst4CI	ACNGT	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	666
BstC8I	GCNNGC	2 cut(s)	97, 378
BstDSI	CCRYGG	2 cut(s)	21, 351
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	2 cut(s)	353, 419
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	2 cut(s)	57, 507
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 302, 317, 362, 422, 431, 446, 527
BstNI	CCWGG	3 cut(s)	171, 603, 637
BstSCI	CCNGG	6 cut(s)	169, 403, 404, 582, 601, 635
BstSFI	CTRYAG	3 cut(s)	285, 366, 627
BstUI	CGCG	2 cut(s)	353, 419
BstV1I	GCAGC	8 cut(s)	238, 238, 280, 352, 399, 449, 619, 641
BstXI	CCANNNNNNTGG	2 cut(s)	28, 320
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	7 cut(s)	56, 99, 216, 305, 311, 331, 416
BtgI	CCRYGG	2 cut(s)	21, 351
BtgZI	GCGATG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	4 cut(s)	147, 186, 296, 339
Cac8I	GCNNGC	2 cut(s)	97, 378
Cfr10I	RCCGGY	2 cut(s)	235, 517
Cfr13I	GGNCC	2 cut(s)	50, 310
Cfr42I	CCGCGG	1 cut(s)	354
Cfr9I	CCCGGG	1 cut(s)	404
CpoI	CGGWCCG	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	235
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	5 cut(s)	22, 64, 137, 265, 589
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	3 cut(s)	54, 214, 414
EagI	CGGCCG	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EciI	GGCGGA	2 cut(s)	95, 536
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	54
Eco88I	CYCGRG	2 cut(s)	404, 496
EcoRII	CCWGG	3 cut(s)	169, 601, 635
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	25, 67, 140, 268, 592
FaiI	YATR	8 cut(s)	23, 65, 138, 222, 266, 287, 590, 653
FaqI	GGGAC	2 cut(s)	152, 466
FatI	CATG	5 cut(s)	21, 63, 136, 264, 588
FauI	CCCGC	2 cut(s)	247, 442
FokI	GGATG	1 cut(s)	557
FspBI	CTAG	1 cut(s)	537
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	7 cut(s)	56, 99, 216, 305, 311, 331, 416
HapII	CCGG	5 cut(s)	53, 236, 405, 518, 584
Hin1II	CATG	5 cut(s)	25, 67, 140, 268, 592
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	5 cut(s)	53, 236, 405, 518, 584
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	203, 661
Hpy188I	TCNGA	2 cut(s)	342, 487
Hpy8I	GTNNAC	2 cut(s)	203, 661
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	4 cut(s)	37, 134, 168, 545
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	598, 665
HpyCH4V	TGCA	7 cut(s)	7, 67, 226, 268, 278, 368, 629
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 302, 317, 362, 422, 431, 446, 527
HpySE526I	ACGT	2 cut(s)	598, 665
Hsp92II	CATG	5 cut(s)	25, 67, 140, 268, 592
KspI	CCGCGG	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	337
Lsp1109I	GCAGC	8 cut(s)	238, 238, 280, 352, 399, 449, 619, 641
LweI	GCATC	2 cut(s)	337, 535
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	2 cut(s)	598, 665
MaeIII	GTNAC	5 cut(s)	145, 151, 238, 513, 622
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	2 cut(s)	357, 399
MluNI	TGGCCA	1 cut(s)	216
MnlI	CCTC	8 cut(s)	109, 110, 251, 286, 295, 316, 364, 567
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	5 cut(s)	14, 59, 320, 353, 632
MspI	CCGG	5 cut(s)	53, 236, 405, 518, 584
MspR9I	CCNGG	6 cut(s)	171, 405, 406, 584, 603, 637
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	171, 603, 637
MvnI	CGCG	2 cut(s)	353, 419
MwoI	GCNNNNNNNGC	8 cut(s)	105, 302, 317, 362, 422, 431, 446, 527
NciI	CCSGG	3 cut(s)	405, 406, 584
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	5 cut(s)	25, 67, 140, 268, 592
NmeAIII	GCCGAG	2 cut(s)	287, 592
NmuCI	GTSAC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	666
Psp6I	CCWGG	3 cut(s)	169, 601, 635
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	3 cut(s)	169, 601, 635
PspPI	GGNCC	2 cut(s)	50, 310
PstI	CTGCAG	2 cut(s)	370, 631
PvuII	CAGCTG	2 cut(s)	320, 632
RseI	CAYNNNNRTG	1 cut(s)	141
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SacII	CCGCGG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	50, 310
ScrFI	CCNGG	6 cut(s)	171, 405, 406, 584, 603, 637
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	337, 535
SfcI	CTRYAG	3 cut(s)	285, 366, 627
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	50
SmaI	CCCGGG	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	357, 399
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	6 cut(s)	169, 403, 404, 582, 601, 635
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	601, 668
TasI	AATT	2 cut(s)	357, 399
TauI	GCSGC	8 cut(s)	59, 77, 353, 356, 419, 437, 533, 617
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	4 cut(s)	154, 193, 303, 339
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	8 cut(s)	226, 251, 268, 365, 387, 437, 629, 632
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	153, 253, 668
TspMI	CCCGGG	1 cut(s)	404
TspRI	CASTG	4 cut(s)	154, 193, 303, 339
VpaK11BI	GGWCC	1 cut(s)	50
XmaI	CCCGGG	1 cut(s)	404
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.