Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

16429567 .. 16437716

Gene Structure 8150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGTCAGGAACAACATCGACCCCAGCAGGGTGACCAGCTGGAACCGATCAAGTACGGCGACGTGTTCAACGTCTCCGGTGAGTTGGCATCGAAACCTATCGCCCCACGCGACGCCGCCACCATGCAGGCTGCCGAAAACCTAGGCCTCGGAGAAACTCAGAGAGGCGGCCCGGCAGCAGTCATGCAGTCGGCGGCTACATACAACGAGCGAGCCTGTCTAGTCGGCCATCGTGAAGCCACCGATGCCACTAGTGAGGATGGTGTTACCGTGTCGGAATCAATCAATCTCGATGGTAACAAAGTTATCACCGAAAGAGTTGCTGGGCAGGTTGTGGGACAATATGTGGAGCCACCGCCTGGGGCATCTCCGGCAGCAGTGGTTCTTGAACACGATGCAATCACAATTGGCGAGGCATTCGAGGCAACTGCTCTCTCTGCCGGTGACAAGCCGGTCGACCAAAGCGACGCAGCTGCCATTCAAGCCGCCGAGATGAGAGCCACCGGGAGTAGTGAGATATCTCCGGGAGGTTTGGCGGCTATAGCTCAGGAGGCTGAGAAGACTAAGCTGGCTGATGTTTTAGTGGATGCCACTCAGAAGATGGGTTGTGACAAACCGGTGACTCGTGAGGATGCGAAGGCCATTATAGGAGCAGAGATAAGGAACAACCCTAATATGAGCACTACTTCTGGTGGAATTGCTGAATCAATGGCTGCTGCAGCTAGGCTTAACCAGAACATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

248

Amino Acids

25.64

Weight (kDa)

4.53

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	17 - 72	3.4e-19	Seed maturation protein
SMP	PF04927	134 - 185	6.1e-20	Seed maturation protein
SMP	PF04927	188 - 246	1.2e-20	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	111
AciI	CCGC	6 cut(s)	117, 168, 194, 356, 486, 536
AcoI	YGGCCR	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	29, 359
AflIII	ACRYGT	1 cut(s)	63
AgeI	ACCGGT	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	70, 389, 482
AhlI	ACTAGT	1 cut(s)	251
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	5 cut(s)	40, 473, 545, 568, 722
AluI	AGCT	5 cut(s)	40, 473, 545, 568, 722
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	4 cut(s)	145, 169, 226, 639
ApeKI	GCWGC	8 cut(s)	131, 176, 374, 470, 473, 713, 716, 719
AsiGI	ACCGGT	1 cut(s)	616
AspA2I	CCTAGG	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	3 cut(s)	173, 505, 525
AsuHPI	GGTGA	5 cut(s)	44, 92, 301, 455, 631
AvrII	CCTAGG	1 cut(s)	142
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	8 cut(s)	118, 188, 386, 460, 482, 700, 703, 731
BccI	CCATC	4 cut(s)	237, 254, 287, 595
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	6 cut(s)	302, 336, 410, 444, 455, 489
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	3 cut(s)	173, 505, 525
BcoDI	GTCTC	1 cut(s)	79
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	4 cut(s)	143, 221, 252, 723
BfmI	CTRYAG	2 cut(s)	540, 717
BfuAI	ACCTGC	1 cut(s)	319
BlnI	CCTAGG	1 cut(s)	142
Bme1390I	CCNGG	4 cut(s)	173, 360, 505, 525
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	45, 351
BmrFI	CCNGG	4 cut(s)	173, 360, 505, 525
BmsI	GCATC	6 cut(s)	98, 235, 374, 385, 577, 622
BpiI	GAAGAC	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	546
BpuMI	CCSGG	3 cut(s)	173, 505, 525
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	142, 148, 359
BsaWI	WCCGGW	2 cut(s)	77, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 359
Bse118I	RCCGGY	3 cut(s)	440, 451, 616
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	142, 148, 359
BseGI	GGATG	3 cut(s)	265, 592, 637
BseLI	CCNNNNNNNGG	2 cut(s)	29, 359
BseMII	CTCAG	4 cut(s)	173, 546, 560, 608
BseXI	GCAGC	8 cut(s)	118, 188, 386, 460, 482, 700, 703, 731
BseYI	CCCAGC	2 cut(s)	24, 323
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	4 cut(s)	147, 171, 228, 641
BshTI	ACCGGT	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	683
BsiSI	CCGG	8 cut(s)	78, 173, 371, 441, 452, 504, 524, 617
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	29, 359
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	147, 171, 228, 641
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	6 cut(s)	117, 168, 194, 356, 486, 536
BspANI	GGCC	4 cut(s)	147, 171, 228, 641
BspCNI	CTCAG	4 cut(s)	172, 547, 559, 607
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	45, 351
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	319
BsrFI	RCCGGY	3 cut(s)	440, 451, 616
BssAI	RCCGGY	3 cut(s)	440, 451, 616
BssECI	CCNNGG	3 cut(s)	142, 148, 359
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	129, 213, 570
BstDEI	CTNAG	5 cut(s)	159, 546, 555, 564, 594
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	265, 592, 637
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 371, 422, 437, 482, 542, 551, 719
BstNI	CCWGG	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	4 cut(s)	171, 358, 503, 523
BstSFI	CTRYAG	2 cut(s)	540, 717
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	8 cut(s)	118, 188, 386, 460, 482, 700, 703, 731
BstV2I	GAAGAC	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	147, 171, 228, 641
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	265, 592, 637
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	129, 213, 570
Cfr10I	RCCGGY	3 cut(s)	440, 451, 616
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	2 cut(s)	122, 476
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	616
CviAII	CATG	2 cut(s)	124, 184
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	5 cut(s)	159, 546, 555, 564, 594
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	127, 187
FaiI	YATR	9 cut(s)	125, 185, 202, 345, 542, 647, 677, 740, 742
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	123, 183
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	3 cut(s)	272, 599, 644
FspBI	CTAG	4 cut(s)	143, 221, 252, 723
GsaI	CCCAGC	2 cut(s)	28, 327
HaeIII	GGCC	4 cut(s)	147, 171, 228, 641
HapII	CCGG	8 cut(s)	78, 173, 371, 441, 452, 504, 524, 617
HgaI	GACGC	2 cut(s)	122, 476
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	127, 187
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	4, 278, 622, 704
HpaII	CCGG	8 cut(s)	78, 173, 371, 441, 452, 504, 524, 617
HphI	GGTGA	5 cut(s)	44, 92, 301, 455, 631
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	152, 162, 277, 597
Hpy188III	TCNNGA	6 cut(s)	8, 233, 290, 386, 548, 626
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	3 cut(s)	65, 116, 470
HpyAV	CCTTC	1 cut(s)	631
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	63, 72
HpyCH4V	TGCA	4 cut(s)	127, 187, 398, 719
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 371, 422, 437, 482, 542, 551, 719
HpyF3I	CTNAG	5 cut(s)	159, 546, 555, 564, 594
HpySE526I	ACGT	2 cut(s)	63, 72
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	127, 187
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	349, 650
Lsp1109I	GCAGC	8 cut(s)	118, 188, 386, 460, 482, 700, 703, 731
LweI	GCATC	6 cut(s)	98, 235, 374, 385, 577, 622
MaeI	CTAG	4 cut(s)	143, 221, 252, 723
MaeII	ACGT	2 cut(s)	63, 72
MaeIII	GTNAC	6 cut(s)	32, 265, 296, 443, 608, 619
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	571, 610
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	2 cut(s)	405, 696
MlyI	GAGTC	2 cut(s)	13, 616
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	158, 158, 250, 406, 415, 521, 544, 622
MseI	TTAA	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	40, 473
MspI	CCGG	8 cut(s)	78, 173, 371, 441, 452, 504, 524, 617
MspR9I	CCNGG	4 cut(s)	173, 360, 505, 525
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	8 cut(s)	245, 371, 422, 437, 482, 542, 551, 719
NciI	CCSGG	3 cut(s)	173, 505, 525
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	127, 187
NlaIV	GGNNCC	2 cut(s)	45, 351
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	4 cut(s)	32, 443, 608, 619
PceI	AGGCCT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 108, 462
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	278, 704
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	616
PleI	GAGTC	2 cut(s)	12, 616
PpsI	GAGTC	2 cut(s)	12, 616
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	2 cut(s)	24, 323
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	45, 351
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	721
PvuII	CAGCTG	2 cut(s)	40, 473
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	729
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	13, 616
ScrFI	CCNGG	4 cut(s)	173, 360, 505, 525
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	6 cut(s)	98, 235, 374, 385, 577, 622
SfcI	CTRYAG	2 cut(s)	540, 717
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	2 cut(s)	405, 696
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	6 cut(s)	117, 168, 194, 356, 486, 536
SspMI	CTAG	4 cut(s)	143, 221, 252, 723
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	171, 358, 503, 523
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	66, 75
TaqI	TCGA	5 cut(s)	19, 92, 291, 420, 456
TasI	AATT	2 cut(s)	405, 696
TauI	GCSGC	5 cut(s)	119, 171, 197, 488, 539
TfiI	GAWTC	2 cut(s)	278, 704
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	4 cut(s)	32, 443, 608, 619
TseI	GCWGC	8 cut(s)	131, 176, 374, 470, 473, 713, 716, 719
Tsp45I	GTSAC	4 cut(s)	32, 443, 608, 619
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmaJI	CCTAGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	4 cut(s)	143, 221, 252, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.