Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

19074862 .. 19076500

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTCAGGAACAGCAACATCGACCCCAGCAGGGTGACCAGCTGGAACCGATCAAGTATGGAGATGTGTTCAATGTCTCCGGTGAGTTGGCGTCCAAGCCTATCGCGCCACGCGTCGCTGCCACCATGCAGGCTGCTGAAAACGTTGTCCTGGGAGAAACTCAGAAAGGCGGCCCGGCCGCAGTCATGCAGTCGGCGGCTACGTACAACGAGCGAGCCGGTCTAGTTGGCCAGCGTGACGCCACTGTTGCCGATAGAGAGGAAGGTGTTACCGTCTCGGAATTGATCGATCTCGATGGTAACAAAGTTATTACAGAAAGCGTTGCCGGGCAGGTTGTGGGACAATATGTGGAGCTACCAGAACCTGGAGCATCTCCGGCAGCAGTAGTTCTTGAGGACGATGCAATCACAATTGGTGAGGCACTCGAGGCAACTGCTCTCTCTGCAGGTGATAAACAGATCGACCAAAGCGACGCAGCTGCCATTCAGGCCGCAGAGATGAGAGCCACCGGAAGTAGCGAAATATCTCCCGGAGGTTTGGCGGCCGTAGCTCAGTATGCAGTGTCTGCTAACGCAAGGGAGGCTGAGACTAAGCTGGCTGATGTTTTAGAGGATGCCACTCAGAAGATGGGTGCAGACAAAGCGGTGACTCGTGAGGATGCGAAGGCGATTATAGGAGCAGAGGTAAGGAATATGAGCACTACTCCGGGTGGCATAGCTGAATCAATGGCTGCTGCAGCTAGGCTTAACCAGAACATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

255

Amino Acids

26.19

Weight (kDa)

4.35

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	18 - 73	4.8e-17	Seed maturation protein
SMP	PF04927	136 - 193	5.3e-21	Seed maturation protein
SMP	PF04927	197 - 252	7.7e-18	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	2 cut(s)	322, 437
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccII	CGCG	2 cut(s)	107, 114
AciI	CCGC	6 cut(s)	171, 180, 197, 492, 542, 644
AclI	AACGTT	1 cut(s)	144
AcoI	YGGCCR	3 cut(s)	177, 229, 543
AcyI	GRCGYC	2 cut(s)	92, 240
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	32, 365
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	150, 364
AluBI	AGCT	7 cut(s)	43, 355, 479, 551, 595, 719, 740
AluI	AGCT	7 cut(s)	43, 355, 479, 551, 595, 719, 740
Alw21I	GWGCWC	1 cut(s)	701
Alw26I	GTCTC	3 cut(s)	82, 280, 581
AlwNI	CAGNNNCTG	2 cut(s)	365, 566
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	5 cut(s)	172, 177, 229, 489, 543
ApeKI	GCWGC	8 cut(s)	119, 134, 380, 476, 479, 731, 734, 737
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	4 cut(s)	176, 328, 531, 708
AsuHPI	GGTGA	5 cut(s)	47, 95, 428, 461, 658
AvaI	CYCGRG	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	231
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	701
BbvI	GCAGC	8 cut(s)	106, 121, 392, 466, 488, 718, 721, 749
BccI	CCATC	2 cut(s)	290, 622
BceAI	ACGGC	1 cut(s)	530
BcgI	CGANNNNNNTGC	4 cut(s)	416, 450, 461, 495
BciT130I	CCWGG	2 cut(s)	152, 366
BcnI	CCSGG	4 cut(s)	176, 328, 531, 708
BcoDI	GTCTC	3 cut(s)	82, 280, 581
BfaI	CTAG	2 cut(s)	224, 741
BfmI	CTRYAG	2 cut(s)	444, 735
BfuAI	ACCTGC	2 cut(s)	322, 437
BglI	GCCNNNNNGGC	1 cut(s)	488
Bme1390I	CCNGG	6 cut(s)	152, 176, 328, 366, 531, 708
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	6 cut(s)	152, 176, 328, 366, 531, 708
BmsI	GCATC	4 cut(s)	380, 391, 604, 649
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	4 cut(s)	176, 328, 531, 708
Bsa29I	ATCGAT	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	92, 240
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	80, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 365
Bse118I	RCCGGY	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	152, 366
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	619, 664
BseLI	CCNNNNNNNGG	2 cut(s)	32, 365
BseMII	CTCAG	4 cut(s)	176, 566, 576, 635
BseX3I	CGGCCG	2 cut(s)	177, 543
BseXI	GCAGC	8 cut(s)	106, 121, 392, 466, 488, 718, 721, 749
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	2 cut(s)	107, 114
Bsh1285I	CGRYCG	2 cut(s)	180, 546
BshFI	GGCC	5 cut(s)	174, 179, 231, 491, 545
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	2 cut(s)	180, 546
BsiHKAI	GWGCWC	1 cut(s)	701
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	8 cut(s)	81, 176, 219, 327, 377, 510, 531, 707
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	32, 365
BsmAI	GTCTC	3 cut(s)	82, 280, 581
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	5 cut(s)	174, 179, 231, 491, 545
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	4 cut(s)	51, 285, 289, 459
BspACI	CCGC	6 cut(s)	171, 180, 197, 492, 542, 644
BspANI	GGCC	5 cut(s)	174, 179, 231, 491, 545
BspCNI	CTCAG	4 cut(s)	175, 565, 577, 634
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	107, 114
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	2 cut(s)	448, 739
BspMI	ACCTGC	2 cut(s)	322, 437
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	51, 285, 289, 459
BssNI	GRCGYC	2 cut(s)	92, 240
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	152, 366
Bst4CI	ACNGT	2 cut(s)	247, 274
BstACI	GRCGYC	2 cut(s)	92, 240
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	132, 216, 233, 597
BstDEI	CTNAG	5 cut(s)	162, 552, 585, 591, 621
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	619, 664
BstFNI	CGCG	2 cut(s)	107, 114
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	54, 288, 292, 462
BstMAI	GTCTC	3 cut(s)	82, 280, 581
BstMBI	GATC	4 cut(s)	51, 285, 289, 459
BstMCI	CGRYCG	2 cut(s)	180, 546
BstNI	CCWGG	2 cut(s)	152, 366
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	6 cut(s)	150, 174, 326, 364, 529, 706
BstSFI	CTRYAG	2 cut(s)	444, 735
BstSNI	TACGTA	1 cut(s)	204
BstUI	CGCG	2 cut(s)	107, 114
BstV1I	GCAGC	8 cut(s)	106, 121, 392, 466, 488, 718, 721, 749
BstZI	CGGCCG	2 cut(s)	177, 543
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	5 cut(s)	174, 179, 231, 491, 545
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	619, 664
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	243, 567
BveI	ACCTGC	2 cut(s)	322, 437
Cac8I	GCNNGC	4 cut(s)	132, 216, 233, 597
CaiI	CAGNNNCTG	2 cut(s)	365, 566
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	4 cut(s)	81, 103, 248, 482
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	127, 187
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	5 cut(s)	162, 552, 585, 591, 621
DpnI	GATC	4 cut(s)	53, 287, 291, 461
DpnII	GATC	4 cut(s)	51, 285, 289, 459
EaeI	YGGCCR	3 cut(s)	177, 229, 543
EagI	CGGCCG	2 cut(s)	177, 543
EclXI	CGGCCG	2 cut(s)	177, 543
Eco105I	TACGTA	1 cut(s)	204
Eco52I	CGGCCG	2 cut(s)	177, 543
Eco88I	CYCGRG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	150, 364
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	130, 190
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	126, 186
FokI	GGATG	2 cut(s)	626, 671
FspBI	CTAG	2 cut(s)	224, 741
GlaI	GCGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	174, 179, 231, 491, 545
HapII	CCGG	8 cut(s)	81, 176, 219, 327, 377, 510, 531, 707
HgaI	GACGC	4 cut(s)	81, 103, 248, 482
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	2 cut(s)	92, 240
Hin1II	CATG	2 cut(s)	130, 190
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	3 cut(s)	4, 649, 722
HpaII	CCGG	8 cut(s)	81, 176, 219, 327, 377, 510, 531, 707
HphI	GGTGA	5 cut(s)	47, 95, 428, 461, 658
Hpy188I	TCNGA	3 cut(s)	165, 280, 624
Hpy188III	TCNNGA	4 cut(s)	8, 293, 392, 653
Hpy99I	CGWCG	2 cut(s)	119, 476
HpyAV	CCTTC	2 cut(s)	257, 658
HpyCH4III	ACNGT	2 cut(s)	247, 274
HpyCH4IV	ACGT	2 cut(s)	144, 203
HpyCH4V	TGCA	7 cut(s)	130, 190, 404, 446, 560, 635, 737
HpyF3I	CTNAG	5 cut(s)	162, 552, 585, 591, 621
HpySE526I	ACGT	2 cut(s)	144, 203
Hsp92I	GRCGYC	2 cut(s)	92, 240
Hsp92II	CATG	2 cut(s)	130, 190
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	51, 285, 289, 459
LmnI	GCTCC	3 cut(s)	352, 368, 677
Lsp1109I	GCAGC	8 cut(s)	106, 121, 392, 466, 488, 718, 721, 749
LweI	GCATC	4 cut(s)	380, 391, 604, 649
MaeI	CTAG	2 cut(s)	224, 741
MaeII	ACGT	2 cut(s)	144, 203
MaeIII	GTNAC	5 cut(s)	35, 236, 268, 299, 646
MalI	GATC	4 cut(s)	53, 287, 291, 461
MboI	GATC	4 cut(s)	51, 285, 289, 459
MboII	GAAGA	1 cut(s)	637
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	701
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	2 cut(s)	281, 411
MluI	ACGCGT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	13, 643
MnlI	CCTC	9 cut(s)	253, 388, 412, 421, 527, 574, 604, 649, 676
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	43, 479
MspI	CCGG	8 cut(s)	81, 176, 219, 327, 377, 510, 531, 707
MspR9I	CCNGG	6 cut(s)	152, 176, 328, 366, 531, 708
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	152, 366
MvnI	CGCG	2 cut(s)	107, 114
NciI	CCSGG	4 cut(s)	176, 328, 531, 708
NdeII	GATC	4 cut(s)	51, 285, 289, 459
NlaIII	CATG	2 cut(s)	130, 190
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	3 cut(s)	35, 236, 646
PaeR7I	CTCGAG	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 200, 468
PfeI	GAWTC	1 cut(s)	722
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	529
PleI	GAGTC	2 cut(s)	12, 643
PpsI	GAGTC	2 cut(s)	12, 643
Ppu21I	YACGTR	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	150, 364
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	150, 364
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	425
PstI	CTGCAG	2 cut(s)	448, 739
PstNI	CAGNNNCTG	2 cut(s)	365, 566
PvuII	CAGCTG	2 cut(s)	43, 479
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	4 cut(s)	51, 285, 289, 459
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	13, 643
ScrFI	CCNGG	6 cut(s)	152, 176, 328, 366, 531, 708
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	4 cut(s)	380, 391, 604, 649
SfcI	CTRYAG	2 cut(s)	444, 735
Sfr274I	CTCGAG	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	392, 425
SmoI	CTYRAG	2 cut(s)	392, 425
SnaBI	TACGTA	1 cut(s)	204
Sse9I	AATT	2 cut(s)	281, 411
SsiI	CCGC	6 cut(s)	171, 180, 197, 492, 542, 644
SspMI	CTAG	2 cut(s)	224, 741
StyD4I	CCNGG	6 cut(s)	150, 174, 326, 364, 529, 706
TaaI	ACNGT	2 cut(s)	247, 274
TaiI	ACGT	2 cut(s)	147, 206
TaqI	TCGA	5 cut(s)	22, 288, 294, 426, 462
TasI	AATT	2 cut(s)	281, 411
TauI	GCSGC	5 cut(s)	174, 182, 200, 494, 545
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	2 cut(s)	250, 567
TseFI	GTSAC	3 cut(s)	35, 236, 646
TseI	GCWGC	8 cut(s)	119, 134, 380, 476, 479, 731, 734, 737
Tsp45I	GTSAC	3 cut(s)	35, 236, 646
TspRI	CASTG	2 cut(s)	250, 567
Van91I	CCANNNNNTGG	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	425
XspI	CTAG	2 cut(s)	224, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.