RLG00000008018

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002798
Physical Location & Seq
Reverse (-)
24356565 .. 24357830
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008018

Sequence Viewer

Length: 786 bp
ATGAGTCAAGAACAGCCGAGCAGGCCTCAGGAGGGGCAAGAACCCGTCAAGTACGGCGACATTTTCAATGTCTCCGGAGACCTCGCATCCAAGACGGTGGCGCCACAAGATGCAGCGATGATGCAGACCGCTGAAACCAGGGTGTTGGGGCAGACCCAGAAGGGCGGTCCGGCAGCTGTCATGCAGTCGGCCGCCACCCGAAACGAGAGAGCTGGCCTCGTCCGCCACGATGAGGCTACTGATGTAGCTGGACGTGAAGGTGTTACTGTTACTGAGACTGATGTCCCTGGAAGGCGAATAATAACTGAATCAGTTGGTGGACAGGTTATTGGCCAGTATGTGGAGCCAACACCGGTTACACAAGTAGCTGCGGGAGGCTTCATGCAGCAGAATGCAATAACTATTGGCGAGGCACTGGAGGCCTCGGCCCAAACAGCTGGGGATAGGCCAGTGGATCAGAGCGATGCCGCTGCAATTCAGGCTGCAGAGGTGAGAGCAACAGGCAGCAATGTGATAATTCCCGGGGGCCTGGCCGCCACTGCTCAATCTGCCGCAGCTCATAATGCGGGGACTGACAGGGAGCAAGACAAGATTAAGGTTTCTGATGTGCTCTCGGGTGCGACCGCCAAGTTACCCGCGGACAAGGCGGCAACTAGGCAGGATGCCGAAGGAGTGGTGAGTGCCGAGTTGAGGAACAACCCGGACATGACCACACGTCCAGGTGGAGTTGCGGCTTCTGTTACTGCAGCTGCCAGGCTGAACGAAAATATGAATGTGAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMP

Protein Analysis

262

Amino Acids

26.83

Weight (kDa)

4.76

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP PF04927 16 - 71 1.7e-20 Seed maturation protein
SMP PF04927 133 - 189 2.9e-22 Seed maturation protein
SMP PF04927 198 - 256 1.8e-21 Seed maturation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 340
AccII CGCG 1 cut(s) 638
AccIII TCCGGA 1 cut(s) 74
AclWI GGATC 1 cut(s) 462
AcoI YGGCCR 3 cut(s) 189, 331, 531
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 4 cut(s) 32, 232, 340, 690
AflIII ACRYGT 2 cut(s) 713, 780
AgeI ACCGGT 1 cut(s) 352
AgsI TTSAA 1 cut(s) 67
AhdI GACNNNNNGTC 1 cut(s) 714
AjiI CACGTC 2 cut(s) 254, 716
AjnI CCWGG 5 cut(s) 137, 286, 528, 718, 752
AluBI AGCT 7 cut(s) 176, 212, 248, 368, 437, 557, 749
AluI AGCT 7 cut(s) 176, 212, 248, 368, 437, 557, 749
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 3 cut(s) 72, 76, 269
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 2 cut(s) 521, 613
Aor13HI TCCGGA 1 cut(s) 74
AoxI GGCC 9 cut(s) 23, 189, 214, 331, 420, 426, 446, 526, 531
AsiGI ACCGGT 1 cut(s) 352
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 167, 427, 526
AsuC2I CCSGG 3 cut(s) 522, 523, 701
AsuHPI GGTGA 2 cut(s) 502, 688
AvaI CYCGRG 2 cut(s) 521, 613
AvaII GGWCC 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 27
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 612
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 5 cut(s) 139, 288, 530, 720, 754
BcnI CCSGG 3 cut(s) 522, 523, 701
BcoDI GTCTC 3 cut(s) 72, 76, 269
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 2 cut(s) 483, 744
BfoI RGCGCY 1 cut(s) 104
BglI GCCNNNNNGGC 1 cut(s) 22
Bme1390I CCNGG 8 cut(s) 139, 288, 522, 523, 530, 701, 720, 754
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 714
BmeT110I CYCGRG 2 cut(s) 521, 613
BmgBI CACGTC 2 cut(s) 254, 716
BmgT120I GGNCC 3 cut(s) 167, 427, 526
BmiI GGNNCC 3 cut(s) 102, 345, 527
BmrFI CCNGG 8 cut(s) 139, 288, 522, 523, 530, 701, 720, 754
BmsI GCATC 5 cut(s) 95, 100, 111, 454, 652
BoxI GACNNNNGTC 1 cut(s) 281
BplI GAGNNNNNCTC 4 cut(s) 10, 42, 201, 233
BpmI CTGGAG 1 cut(s) 437
BpuMI CCSGG 3 cut(s) 522, 523, 701
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 6 cut(s) 138, 286, 423, 521, 522, 636
BsaWI WCCGGW 2 cut(s) 74, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 232, 340, 690
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 3 cut(s) 334, 420, 449
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 514
BseAI TCCGGA 1 cut(s) 74
BseBI CCWGG 5 cut(s) 139, 288, 530, 720, 754
BseDI CCNNGG 6 cut(s) 138, 286, 423, 521, 522, 636
BseGI GGATG 2 cut(s) 86, 667
BseLI CCNNNNNNNGG 4 cut(s) 32, 232, 340, 690
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 41, 264
BseNI ACTGG 3 cut(s) 334, 420, 449
BseX3I CGGCCG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 638
Bsh1285I CGRYCG 2 cut(s) 192, 624
BshFI GGCC 9 cut(s) 25, 191, 216, 333, 422, 428, 448, 528, 533
BshNI GGYRCC 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 352
BsiEI CGRYCG 2 cut(s) 192, 624
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 2 cut(s) 521, 613
BsiSI CCGG 5 cut(s) 75, 170, 353, 522, 701
BslFI GGGAC 2 cut(s) 269, 583
BslI CCNNNNNNNGG 4 cut(s) 32, 232, 340, 690
BsmAI GTCTC 3 cut(s) 72, 76, 269
BsmFI GGGAC 2 cut(s) 269, 583
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 9 cut(s) 25, 191, 216, 333, 422, 428, 448, 528, 533
Bso31I GGTCTC 1 cut(s) 72
BsoBI CYCGRG 2 cut(s) 521, 613
Bsp1286I GDGCHC 1 cut(s) 612
Bsp13I TCCGGA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 454
BspANI GGCC 9 cut(s) 25, 191, 216, 333, 422, 428, 448, 528, 533
BspCNI CTCAG 2 cut(s) 40, 265
BspEI TCCGGA 1 cut(s) 74
BspFNI CGCG 1 cut(s) 638
BspLI GGNNCC 3 cut(s) 102, 345, 527
BspMAI CTGCAG 2 cut(s) 487, 748
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 3 cut(s) 334, 420, 449
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 6 cut(s) 138, 286, 423, 521, 522, 636
BssMI GATC 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 5 cut(s) 139, 288, 530, 720, 754
Bst4CI ACNGT 2 cut(s) 97, 268
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 23, 214
BstDEI CTNAG 2 cut(s) 27, 273
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 86, 667
BstFNI CGCG 1 cut(s) 638
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 3 cut(s) 72, 76, 269
BstMBI GATC 1 cut(s) 454
BstMCI CGRYCG 2 cut(s) 192, 624
BstMWI GCNNNNNNNGC 9 cut(s) 22, 222, 419, 434, 479, 539, 548, 563, 644
BstNI CCWGG 5 cut(s) 139, 288, 530, 720, 754
BstNSI RCATGY 1 cut(s) 784
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 8 cut(s) 137, 286, 520, 521, 528, 699, 718, 752
BstSFI CTRYAG 2 cut(s) 483, 744
BstUI CGCG 1 cut(s) 638
BstXI CCANNNNNNTGG 3 cut(s) 97, 145, 437
BstZI CGGCCG 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 9 cut(s) 25, 191, 216, 333, 422, 428, 448, 528, 533
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 2 cut(s) 131, 477
BtrI CACGTC 2 cut(s) 254, 716
BtsCI GGATG 2 cut(s) 86, 667
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 413, 456, 537
Cac8I GCNNGC 2 cut(s) 23, 214
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 167, 427, 526
Cfr42I CCGCGG 1 cut(s) 639
Cfr9I CCCGGG 1 cut(s) 521
CpoI CGGWCCG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 52
CspAI ACCGGT 1 cut(s) 352
CspI CGGWCCG 1 cut(s) 167
CviAII CATG 4 cut(s) 181, 382, 706, 781
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 27, 273
DinI GGCGCC 1 cut(s) 102
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DriI GACNNNNNGTC 1 cut(s) 714
EaeI YGGCCR 3 cut(s) 189, 331, 531
EagI CGGCCG 1 cut(s) 189
Eam1105I GACNNNNNGTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 189
Eco147I AGGCCT 2 cut(s) 25, 422
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 167
Eco52I CGGCCG 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 2 cut(s) 521, 613
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 5 cut(s) 137, 286, 528, 718, 752
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 4 cut(s) 184, 385, 709, 784
FaiI YATR 7 cut(s) 182, 339, 383, 561, 707, 770, 782
FaqI GGGAC 2 cut(s) 269, 583
FatI CATG 4 cut(s) 180, 381, 705, 780
FauI CCCGC 3 cut(s) 364, 559, 643
FokI GGATG 2 cut(s) 73, 674
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 9 cut(s) 25, 191, 216, 333, 422, 428, 448, 528, 533
HapII CCGG 5 cut(s) 75, 170, 353, 522, 701
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 184, 385, 709, 784
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 4, 308
HpaII CCGG 5 cut(s) 75, 170, 353, 522, 701
HphI GGTGA 2 cut(s) 502, 688
Hpy166II GTNNAC 2 cut(s) 320, 778
Hpy188I TCNGA 2 cut(s) 459, 604
Hpy188III TCNNGA 3 cut(s) 8, 29, 75
Hpy8I GTNNAC 2 cut(s) 320, 778
HpyAV CCTTC 4 cut(s) 154, 251, 285, 662
HpyCH4III ACNGT 2 cut(s) 97, 268
HpyCH4IV ACGT 2 cut(s) 253, 715
HpyCH4V TGCA 8 cut(s) 113, 124, 184, 385, 395, 473, 485, 746
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 222, 419, 434, 479, 539, 548, 563, 644
HpyF3I CTNAG 2 cut(s) 27, 273
HpySE526I ACGT 2 cut(s) 253, 715
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 184, 385, 709, 784
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 74
KspI CCGCGG 1 cut(s) 639
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 2 cut(s) 343, 580
LweI GCATC 5 cut(s) 95, 100, 111, 454, 652
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 253, 715
MaeIII GTNAC 5 cut(s) 262, 268, 355, 630, 739
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 612
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 2 cut(s) 474, 516
MluNI TGGCCA 1 cut(s) 333
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 13
Mox20I TGGCCA 1 cut(s) 333
MroI TCCGGA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 6 cut(s) 131, 176, 437, 470, 638, 749
MspI CCGG 5 cut(s) 75, 170, 353, 522, 701
MspR9I CCNGG 8 cut(s) 139, 288, 522, 523, 530, 701, 720, 754
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 5 cut(s) 139, 288, 530, 720, 754
MvnI CGCG 1 cut(s) 638
MwoI GCNNNNNNNGC 9 cut(s) 22, 222, 419, 434, 479, 539, 548, 563, 644
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 3 cut(s) 522, 523, 701
NdeII GATC 1 cut(s) 454
NlaIII CATG 4 cut(s) 184, 385, 709, 784
NlaIV GGNNCC 3 cut(s) 102, 345, 527
NmeAIII GCCGAG 3 cut(s) 42, 404, 709
NspI RCATGY 1 cut(s) 784
PceI AGGCCT 2 cut(s) 25, 422
PciI ACATGT 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 340
PinAI ACCGGT 1 cut(s) 352
PleI GAGTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 780
PshAI GACNNNNGTC 1 cut(s) 281
Psp6I CCWGG 5 cut(s) 137, 286, 528, 718, 752
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 5 cut(s) 137, 286, 528, 718, 752
PspN4I GGNNCC 3 cut(s) 102, 345, 527
PspPI GGNCC 3 cut(s) 167, 427, 526
PstI CTGCAG 2 cut(s) 487, 748
PvuII CAGCTG 3 cut(s) 176, 437, 749
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
Rsr2I CGGWCCG 1 cut(s) 167
RsrII CGGWCCG 1 cut(s) 167
SacII CCGCGG 1 cut(s) 639
SaqAI TTAA 1 cut(s) 594
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 3 cut(s) 167, 427, 526
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 8 cut(s) 139, 288, 522, 523, 530, 701, 720, 754
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 5 cut(s) 95, 100, 111, 454, 652
SfcI CTRYAG 2 cut(s) 483, 744
SfoI GGCGCC 1 cut(s) 102
Sfr303I CCGCGG 1 cut(s) 639
SgrBI CCGCGG 1 cut(s) 639
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 523
Sse9I AATT 2 cut(s) 474, 516
SseBI AGGCCT 2 cut(s) 25, 422
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 1 cut(s) 654
StuI AGGCCT 2 cut(s) 25, 422
StyD4I CCNGG 8 cut(s) 137, 286, 520, 521, 528, 699, 718, 752
TaaI ACNGT 2 cut(s) 97, 268
TaiI ACGT 2 cut(s) 256, 718
TasI AATT 2 cut(s) 474, 516
TauI GCSGC 6 cut(s) 194, 470, 536, 554, 650, 734
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 3 cut(s) 420, 456, 544
TspDTI ATGAA 2 cut(s) 370, 785
TspMI CCCGGG 1 cut(s) 521
TspRI CASTG 3 cut(s) 420, 456, 544
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 784
XmaI CCCGGG 1 cut(s) 521
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.