Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00855

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

36130 .. 37393

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGTCAAGAACAGCCGAGGAGGCCTCAGGAGGGGCAAGAACCCGTCAAGTACGGCGACATTTTCAATGTCTCCGGCGACCTAGCATCCAAGACGGTAGCGCCACAAGATGCTGCGATGATGCAGACCGCTGAAACCATGGTGTTGGGGCAGACCCAGAAGGGCGGTCCGGCCGCTGTCATGCAATCAGCCGCCACCCGAAACGAGAGAGCTGGCCTCGTCCGCCACGATGAGGCTACTGATGTAGCTGGACATGAAGGTGTCACTGTTACAGAGATTGATGTCCCTGGAAGGCGAACAATCACTGAATCAGTTGGTGGACAGGTTATTGGCCAGTATGTGCAGCCAACACCGGTTACACAAGTAGCTGCGGGAGGCTTCTTGCAGCAGAATGCAATAACTATAGGGGAGGCACTGGAGGCCTCGGCCCAAACAGCTGGGGATAGGCCAGTGGATCAGAGCGATGCCGCGGCAATTCAGGCTGCAGAGGTGCGAGCAACAGGCAGCAATGTGATAATTCCCGGGGGCCTGGCCGCGACGGCTCAATCTGCCGCAGCTCACAATGCGGGGACTGACAGGGAGCAAGACAAGATTAAGTTACCCGTGGACAAGGCGGCAACTAGGCAGGATGCCGAAGGAGTGGTGAGTGCCGAGTTGAGGAACAACCCGGACATGACCACACGTCCAGGTGGAGTTGCGGCTTCTGTTACTGCAGCTGCCAGGCTGAACGAAAATATGAATGTGAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

250

Amino Acids

25.8

Weight (kDa)

4.79

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 71	1e-19	Seed maturation protein
SMP	PF04927	133 - 189	2.7e-22	Seed maturation protein
SMP	PF04927	199 - 245	1.3e-16	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	470, 536
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	3 cut(s)	171, 331, 531
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	32, 232, 657
AflIII	ACRYGT	2 cut(s)	680, 747
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	681
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	4 cut(s)	286, 528, 685, 719
AluBI	AGCT	6 cut(s)	212, 248, 368, 437, 557, 716
AluI	AGCT	6 cut(s)	212, 248, 368, 437, 557, 716
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	9 cut(s)	23, 171, 214, 331, 420, 426, 446, 526, 531
ApeKI	GCWGC	9 cut(s)	113, 343, 368, 385, 482, 504, 554, 713, 716
AsiGI	ACCGGT	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	167, 427, 526
AsuC2I	CCSGG	3 cut(s)	522, 523, 668
AsuHPI	GGTGA	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	333
BbvI	GCAGC	9 cut(s)	100, 355, 355, 397, 469, 516, 566, 703, 725
BceAI	ACGGC	2 cut(s)	70, 555
BciT130I	CCWGG	4 cut(s)	288, 530, 687, 721
BcnI	CCSGG	3 cut(s)	522, 523, 668
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	83, 621
BfmI	CTRYAG	3 cut(s)	402, 483, 711
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	2 cut(s)	22, 539
Bme1390I	CCNGG	7 cut(s)	288, 522, 523, 530, 668, 687, 721
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	3 cut(s)	167, 427, 526
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	7 cut(s)	288, 522, 523, 530, 668, 687, 721
BmsI	GCATC	5 cut(s)	95, 100, 111, 454, 619
BplI	GAGNNNNNCTC	4 cut(s)	10, 42, 201, 233
BpmI	CTGGAG	1 cut(s)	437
BpuMI	CCSGG	3 cut(s)	522, 523, 668
BsaAI	YACGTR	1 cut(s)	750
BsaJI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 603
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 232, 657
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	334, 420, 449
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	4 cut(s)	288, 530, 687, 721
BseDI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 603
BseGI	GGATG	2 cut(s)	86, 634
BseLI	CCNNNNNNNGG	3 cut(s)	32, 232, 657
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	334, 420, 449
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	9 cut(s)	100, 355, 355, 397, 469, 516, 566, 703, 725
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	470, 536
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	9 cut(s)	25, 173, 216, 333, 422, 428, 448, 528, 533
BshTI	ACCGGT	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	5 cut(s)	75, 170, 353, 522, 668
BslFI	GGGAC	2 cut(s)	269, 583
BslI	CCNNNNNNNGG	3 cut(s)	32, 232, 657
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	269, 583
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	9 cut(s)	25, 173, 216, 333, 422, 428, 448, 528, 533
BsoBI	CYCGRG	1 cut(s)	521
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	9 cut(s)	25, 173, 216, 333, 422, 428, 448, 528, 533
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	470, 536
BspLI	GGNNCC	1 cut(s)	527
BspMAI	CTGCAG	2 cut(s)	487, 715
BspPI	GGATC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	334, 420, 449
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 603
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	4 cut(s)	288, 530, 687, 721
Bst4CI	ACNGT	2 cut(s)	97, 268
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	214, 495
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	3 cut(s)	138, 468, 603
BstF5I	GGATG	2 cut(s)	86, 634
BstFNI	CGCG	2 cut(s)	470, 536
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
BstNI	CCWGG	4 cut(s)	288, 530, 687, 721
BstSCI	CCNGG	7 cut(s)	286, 520, 521, 528, 666, 685, 719
BstSFI	CTRYAG	3 cut(s)	402, 483, 711
BstUI	CGCG	2 cut(s)	470, 536
BstV1I	GCAGC	9 cut(s)	100, 355, 355, 397, 469, 516, 566, 703, 725
BstXI	CCANNNNNNTGG	2 cut(s)	145, 437
BstZI	CGGCCG	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	9 cut(s)	25, 173, 216, 333, 422, 428, 448, 528, 533
BtgI	CCRYGG	3 cut(s)	138, 468, 603
BtgZI	GCGATG	2 cut(s)	131, 477
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	86, 634
BtsIMutI	CAGTG	4 cut(s)	264, 303, 413, 456
Cac8I	GCNNGC	2 cut(s)	214, 495
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	167, 427, 526
Cfr42I	CCGCGG	1 cut(s)	471
Cfr9I	CCCGGG	1 cut(s)	521
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	52
CspAI	ACCGGT	1 cut(s)	352
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	4 cut(s)	139, 181, 254, 673
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	681
EaeI	YGGCCR	3 cut(s)	171, 331, 531
EagI	CGGCCG	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	681
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	2 cut(s)	25, 422
Eco47I	GGWCC	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	4 cut(s)	286, 528, 685, 719
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	142, 184, 257, 676
FaiI	YATR	7 cut(s)	140, 182, 255, 339, 404, 674, 737
FaqI	GGGAC	2 cut(s)	269, 583
FatI	CATG	4 cut(s)	138, 180, 253, 672
FauI	CCCGC	2 cut(s)	364, 559
FokI	GGATG	2 cut(s)	73, 641
FspBI	CTAG	2 cut(s)	83, 621
GlaI	GCGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	9 cut(s)	25, 173, 216, 333, 422, 428, 448, 528, 533
HapII	CCGG	5 cut(s)	75, 170, 353, 522, 668
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	4 cut(s)	142, 184, 257, 676
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	4, 308
HpaII	CCGG	5 cut(s)	75, 170, 353, 522, 668
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	3 cut(s)	320, 607, 745
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	2 cut(s)	8, 29
Hpy8I	GTNNAC	3 cut(s)	320, 607, 745
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	4 cut(s)	154, 251, 285, 629
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyCH4IV	ACGT	2 cut(s)	682, 749
HpyCH4V	TGCA	7 cut(s)	124, 184, 343, 385, 395, 485, 713
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	682, 749
Hsp92II	CATG	4 cut(s)	142, 184, 257, 676
HspAI	GCGC	1 cut(s)	101
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	9 cut(s)	100, 355, 355, 397, 469, 516, 566, 703, 725
LweI	GCATC	5 cut(s)	95, 100, 111, 454, 619
MaeI	CTAG	2 cut(s)	83, 621
MaeII	ACGT	2 cut(s)	682, 749
MaeIII	GTNAC	5 cut(s)	262, 268, 355, 597, 706
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	474, 516
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	5 cut(s)	131, 176, 437, 470, 716
MspI	CCGG	5 cut(s)	75, 170, 353, 522, 668
MspR9I	CCNGG	7 cut(s)	288, 522, 523, 530, 668, 687, 721
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	4 cut(s)	288, 530, 687, 721
MvnI	CGCG	2 cut(s)	470, 536
MwoI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
NciI	CCSGG	3 cut(s)	522, 523, 668
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	4 cut(s)	142, 184, 257, 676
NlaIV	GGNNCC	1 cut(s)	527
NmeAIII	GCCGAG	3 cut(s)	42, 404, 676
NmuCI	GTSAC	1 cut(s)	262
PceI	AGGCCT	2 cut(s)	25, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	308
PinAI	ACCGGT	1 cut(s)	352
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	750
Psp6I	CCWGG	4 cut(s)	286, 528, 685, 719
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	4 cut(s)	286, 528, 685, 719
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	3 cut(s)	167, 427, 526
PstI	CTGCAG	2 cut(s)	487, 715
PvuII	CAGCTG	2 cut(s)	437, 716
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	258
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	167, 427, 526
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	7 cut(s)	288, 522, 523, 530, 668, 687, 721
SfaNI	GCATC	5 cut(s)	95, 100, 111, 454, 619
SfcI	CTRYAG	3 cut(s)	402, 483, 711
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	474, 516
SseBI	AGGCCT	2 cut(s)	25, 422
SspMI	CTAG	2 cut(s)	83, 621
StuI	AGGCCT	2 cut(s)	25, 422
StyD4I	CCNGG	7 cut(s)	286, 520, 521, 528, 666, 685, 719
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	97, 268
TaiI	ACGT	2 cut(s)	685, 752
TasI	AATT	2 cut(s)	474, 516
TauI	GCSGC	8 cut(s)	176, 194, 470, 473, 536, 554, 617, 701
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	4 cut(s)	271, 310, 420, 456
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	9 cut(s)	113, 343, 368, 385, 482, 504, 554, 713, 716
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	270, 752
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	4 cut(s)	271, 310, 420, 456
VpaK11BI	GGWCC	1 cut(s)	167
XmaI	CCCGGG	1 cut(s)	521
XspI	CTAG	2 cut(s)	83, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.