Rh6AG324600

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002798
Physical Location & Seq
Forward (+)
52520300 .. 52532732
12433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG324600.1

Sequence Viewer

Length: 618 bp
ATGAAGAAGGTCCATCCCTCCCTCAGCAAGCGGAGCACCTCGTCCAACGTCGAATCATCTTCGGCGCCGAAGAAGCTCCGGAGACTCCCTCACGTGTTCGCCAAGTTTCTCGAGCTTCCTTTCCAGTCCAGCGCCGACGTTTCCGTCCAAGAAACCTCCGACTCTTTCCGGTTCTCCGTGCCCGTGCCAGCCGGTCATCAAGTATACCACGACGAGGTTGTCAGGGCCAACGCGATAGAGATCTATCCGGGGGTGACCAAGATTGTGATACAAAAGATGAACGGTGGTGACTTTTCGCCGGAGGTGAACAACGTCGGGGGTCATTTCGATAAGTGGAGGTTTCGTCTCCCGCCTTCGACGAGACCGGAGTTGGCTAATGCGACGTACGCTGGTCAAGAACTCGTTGTCACTGTTCCAAAGAACCATGTTCATGATCACGGTGATCGTAGCACGCGAGAGGAACAAGAACAAGATGAAAATGTTAGGATCATTAATAGTTGGAGACAGGGTCAGGAAACCCTTGAAGGTATAAGGGTGGTATGTTTAGGTGCTGGGTTTGCAAGGAAGATGCTACAAGTTGTGACCACAGCAGCCACTGCTGGTGCCCTTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.74

Weight (kDa)

9.07

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 218
AccB1I GGYRCC 2 cut(s) 64, 602
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 233, 454
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 2 cut(s) 31, 350
AclWI GGATC 1 cut(s) 494
AcvI CACGTG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 524, 611
AluBI AGCT 2 cut(s) 76, 115
AluI AGCT 2 cut(s) 76, 115
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 4 cut(s) 76, 350, 355, 496
AlwI GGATC 1 cut(s) 494
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 590
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 2 cut(s) 67, 134
AspS9I GGNCC 2 cut(s) 10, 225
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 4 cut(s) 265, 299, 316, 452
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 2 cut(s) 183, 607
BanI GGYRCC 2 cut(s) 64, 602
BbrPI CACGTG 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 602
BccI CCATC 1 cut(s) 21
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 4 cut(s) 76, 350, 355, 496
BfoI RGCGCY 2 cut(s) 68, 135
BglII AGATCT 1 cut(s) 240
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 10, 225
BmiI GGNNCC 2 cut(s) 66, 604
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 3 cut(s) 78, 168, 364
BsaXI ACNNNNNCTCC 4 cut(s) 328, 358, 493, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 2 cut(s) 183, 607
BseXI GCAGC 1 cut(s) 602
BseYI CCCAGC 1 cut(s) 551
Bsh1236I CGCG 2 cut(s) 233, 454
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 2 cut(s) 64, 602
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
BsiWI CGTACG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 4 cut(s) 76, 350, 355, 496
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 38, 183, 607
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 4 cut(s) 240, 433, 442, 486
BspACI CCGC 2 cut(s) 31, 350
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 2 cut(s) 233, 454
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 66, 604
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 2 cut(s) 64, 602
BspTNI GGTCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 4 cut(s) 240, 433, 442, 486
BssNAI GTATAC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 65
Bst1107I GTATAC 1 cut(s) 205
Bst4CI ACNGT 3 cut(s) 284, 412, 440
BstACI GRCGYC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 29, 189, 452
BstDEI CTNAG 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 233, 454
BstH2I RGCGCY 2 cut(s) 68, 135
BstHHI GCGC 2 cut(s) 67, 134
BstKTI GATC 4 cut(s) 243, 436, 445, 489
BstMAI GTCTC 4 cut(s) 76, 350, 355, 496
BstMBI GATC 4 cut(s) 240, 433, 442, 486
BstMWI GCNNNNNNNGC 5 cut(s) 33, 73, 386, 557, 596
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 2 cut(s) 183, 607
BstUI CGCG 2 cut(s) 233, 454
BstV1I GCAGC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BstZ17I GTATAC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 408, 594
Cac8I GCNNGC 3 cut(s) 29, 189, 452
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 67, 134
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 10, 225
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 425, 431
CviJI RGCY 6 cut(s) 76, 115, 191, 227, 374, 593
CviKI_1 RGCY 6 cut(s) 76, 115, 191, 227, 374, 593
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 23
DinI GGCGCC 1 cut(s) 66
DpnI GATC 4 cut(s) 242, 435, 444, 488
DpnII GATC 4 cut(s) 240, 433, 442, 486
DrdI GACNNNNNNGTC 2 cut(s) 143, 218
DseDI GACNNNNNNGTC 2 cut(s) 143, 218
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 428, 434
FaiI YATR 5 cut(s) 205, 426, 432, 530, 541
FatI CATG 2 cut(s) 424, 430
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 591
Fsp4HI GCNGC 1 cut(s) 591
GlaI GCGC 2 cut(s) 66, 133
GluI GCNGC 1 cut(s) 591
GsaI CCCAGC 1 cut(s) 555
HaeII RGCGCY 2 cut(s) 68, 135
HaeIII GGCC 1 cut(s) 227
HapII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HhaI GCGC 2 cut(s) 67, 134
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 428, 434
Hin6I GCGC 2 cut(s) 65, 132
HinP1I GCGC 2 cut(s) 65, 132
HinfI GANTC 3 cut(s) 53, 84, 161
HpaII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HphI GGTGA 4 cut(s) 265, 299, 316, 452
Hpy166II GTNNAC 2 cut(s) 205, 307
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 5 cut(s) 79, 110, 395, 431, 512
Hpy8I GTNNAC 2 cut(s) 205, 307
Hpy99I CGWCG 6 cut(s) 53, 140, 215, 317, 361, 385
HpyAV CCTTC 3 cut(s) 363, 518, 617
HpyCH4III ACNGT 3 cut(s) 284, 412, 440
HpyCH4IV ACGT 5 cut(s) 48, 93, 138, 312, 383
HpyCH4V TGCA 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 73, 386, 557, 596
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 5 cut(s) 48, 93, 138, 312, 383
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 428, 434
HspAI GCGC 2 cut(s) 65, 132
KasI GGCGCC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 240, 433, 442, 486
LmnI GCTCC 2 cut(s) 33, 81
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 1 cut(s) 558
MaeII ACGT 5 cut(s) 48, 93, 138, 312, 383
MaeIII GTNAC 4 cut(s) 253, 287, 406, 580
MalI GATC 4 cut(s) 242, 435, 444, 488
MboI GATC 4 cut(s) 240, 433, 442, 486
MboII GAAGA 4 cut(s) 16, 51, 82, 577
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 3 cut(s) 38, 183, 607
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 2 cut(s) 78, 155
MmeI TCCRAC 3 cut(s) 69, 183, 479
MnlI CCTC 9 cut(s) 28, 32, 49, 99, 166, 208, 295, 330, 451
MroI TCCGGA 1 cut(s) 78
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 233, 454
MwoI GCNNNNNNNGC 5 cut(s) 33, 73, 386, 557, 596
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 1 cut(s) 249
NdeII GATC 4 cut(s) 240, 433, 442, 486
NlaIII CATG 2 cut(s) 428, 434
NlaIV GGNNCC 2 cut(s) 66, 604
NmuCI GTSAC 4 cut(s) 253, 287, 406, 580
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 1 cut(s) 53
Pfl23II CGTACG 1 cut(s) 384
PflFI GACNNNGTC 1 cut(s) 507
PkrI GCNGC 1 cut(s) 592
PleI GAGTC 2 cut(s) 78, 155
PluTI GGCGCC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 2 cut(s) 78, 155
Ppu21I YACGTR 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 492
PspCI CACGTG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 551
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 66, 604
PspPI GGNCC 2 cut(s) 10, 225
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 507
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 4 cut(s) 240, 433, 442, 486
Sau96I GGNCC 2 cut(s) 10, 225
SchI GAGTC 2 cut(s) 78, 155
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 3 cut(s) 38, 183, 607
SfaNI GCATC 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 2 cut(s) 31, 350
SspDI GGCGCC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 3 cut(s) 284, 412, 440
TaiI ACGT 5 cut(s) 51, 96, 141, 315, 386
TaqI TCGA 4 cut(s) 51, 111, 327, 356
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 415, 601
TseFI GTSAC 4 cut(s) 253, 287, 406, 580
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 4 cut(s) 253, 287, 406, 580
TspDTI ATGAA 4 cut(s) 17, 293, 419, 489
TspGWI ACGGA 2 cut(s) 133, 166
TspRI CASTG 2 cut(s) 415, 601
Tth111I GACNNNGTC 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 10
VspI ATTAAT 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.