Rmu_sc0006791.1_g000002

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006791.1
OG0002798
Physical Location & Seq
Reverse (-)
12159 .. 12662
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006791.1_g000002.1.cds

Sequence Viewer

Length: 504 bp
atgaagaaggtccatccctccctcagcaagcggagcacctcgtccaacgtcgaatcatcttcggcgccgaagaagctccggagactccctcacgtgttcgacaagtttctcgagcttcctttccagtccagcgccgacgtttccgtccaagaaacctccgactctttccggttctccgtgcccgtgccagccggtcatcaagtataccacgacaaggttgtcagggccaacgcgatagagatctatccgggggtgaccaagattgtgatacaaaagatgaacggtggtgacttttcgccggaggtgaacaacgtcgggggtcatttcgataagtggaggtttcgtctcccgccttcgacgagaccggagttggctaatgcgacgtacgctggtcaagaactggttgtcactgttccaaagaaccatgttcatgatcacggtgatcgtagcacgcgagaggaacaagaacaagatgaaaatgttagggtaattgttatacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.8

Weight (kDa)

8.89

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 218
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 233, 454
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 2 cut(s) 31, 350
AcvI CACGTG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 93
AluBI AGCT 2 cut(s) 76, 115
AluI AGCT 2 cut(s) 76, 115
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 76, 350, 355
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 225
AspLEI GCGC 2 cut(s) 67, 134
AspS9I GGNCC 2 cut(s) 10, 225
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 4 cut(s) 265, 299, 316, 452
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 64
BbrPI CACGTG 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 21
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 76, 350, 355
BfoI RGCGCY 2 cut(s) 68, 135
BglII AGATCT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 10, 225
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 3 cut(s) 78, 168, 364
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 124, 405
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 124, 405
BseSI GKGCMC 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 233, 454
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
BsiWI CGTACG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 76, 350, 355
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 38, 183
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 3 cut(s) 240, 433, 442
BspACI CCGC 2 cut(s) 31, 350
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 2 cut(s) 233, 454
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 124, 405
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 3 cut(s) 240, 433, 442
BssNAI GTATAC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 65
Bst1107I GTATAC 1 cut(s) 205
Bst4CI ACNGT 4 cut(s) 284, 412, 440, 501
BstACI GRCGYC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 29, 189, 452
BstDEI CTNAG 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 233, 454
BstH2I RGCGCY 2 cut(s) 68, 135
BstHHI GCGC 2 cut(s) 67, 134
BstKTI GATC 3 cut(s) 243, 436, 445
BstMAI GTCTC 3 cut(s) 76, 350, 355
BstMBI GATC 3 cut(s) 240, 433, 442
BstMWI GCNNNNNNNGC 3 cut(s) 33, 73, 386
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 2 cut(s) 233, 454
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BstZ17I GTATAC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 29, 189, 452
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 67, 134
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 10, 225
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 425, 431
CviJI RGCY 5 cut(s) 76, 115, 191, 227, 374
CviKI_1 RGCY 5 cut(s) 76, 115, 191, 227, 374
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 23
DinI GGCGCC 1 cut(s) 66
DpnI GATC 3 cut(s) 242, 435, 444
DpnII GATC 3 cut(s) 240, 433, 442
DrdI GACNNNNNNGTC 2 cut(s) 143, 218
DseDI GACNNNNNNGTC 2 cut(s) 143, 218
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 428, 434
FaiI YATR 4 cut(s) 205, 426, 432, 497
FatI CATG 2 cut(s) 424, 430
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 204
GlaI GCGC 2 cut(s) 66, 133
HaeII RGCGCY 2 cut(s) 68, 135
HaeIII GGCC 1 cut(s) 227
HapII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HhaI GCGC 2 cut(s) 67, 134
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 428, 434
Hin6I GCGC 2 cut(s) 65, 132
HinP1I GCGC 2 cut(s) 65, 132
HinfI GANTC 3 cut(s) 53, 84, 161
HpaII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HphI GGTGA 4 cut(s) 265, 299, 316, 452
Hpy166II GTNNAC 2 cut(s) 205, 307
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 4 cut(s) 79, 110, 395, 431
Hpy8I GTNNAC 2 cut(s) 205, 307
Hpy99I CGWCG 5 cut(s) 53, 140, 317, 361, 385
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 4 cut(s) 284, 412, 440, 501
HpyCH4IV ACGT 5 cut(s) 48, 93, 138, 312, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 73, 386
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 5 cut(s) 48, 93, 138, 312, 383
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 428, 434
HspAI GCGC 2 cut(s) 65, 132
KasI GGCGCC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 240, 433, 442
LmnI GCTCC 2 cut(s) 33, 81
MaeII ACGT 5 cut(s) 48, 93, 138, 312, 383
MaeIII GTNAC 3 cut(s) 253, 287, 406
MalI GATC 3 cut(s) 242, 435, 444
MboI GATC 3 cut(s) 240, 433, 442
MboII GAAGA 3 cut(s) 16, 51, 82
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 38, 183
MluCI AATT 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 2 cut(s) 78, 155
MmeI TCCRAC 2 cut(s) 69, 183
MnlI CCTC 8 cut(s) 28, 32, 49, 99, 166, 295, 330, 451
MroI TCCGGA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 233, 454
MwoI GCNNNNNNNGC 3 cut(s) 33, 73, 386
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 1 cut(s) 249
NdeII GATC 3 cut(s) 240, 433, 442
NlaIII CATG 2 cut(s) 428, 434
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 3 cut(s) 253, 287, 406
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 1 cut(s) 53
Pfl23II CGTACG 1 cut(s) 384
PleI GAGTC 2 cut(s) 78, 155
PluTI GGCGCC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 2 cut(s) 78, 155
Ppu21I YACGTR 1 cut(s) 94
PspCI CACGTG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 253
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 10, 225
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 429
Sau3AI GATC 3 cut(s) 240, 433, 442
Sau96I GGNCC 2 cut(s) 10, 225
SchI GAGTC 2 cut(s) 78, 155
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 38, 183
SfoI GGCGCC 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 489
SsiI CCGC 2 cut(s) 31, 350
SspDI GGCGCC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 4 cut(s) 284, 412, 440, 501
TaiI ACGT 5 cut(s) 51, 96, 141, 315, 386
TaqI TCGA 5 cut(s) 51, 99, 111, 327, 356
TasI AATT 1 cut(s) 489
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 3 cut(s) 253, 287, 406
Tsp45I GTSAC 3 cut(s) 253, 287, 406
TspDTI ATGAA 4 cut(s) 17, 293, 419, 489
TspGWI ACGGA 2 cut(s) 133, 166
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.