Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

16441155 .. 16442121

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTAGCTTTATTCCCGGCCTTCTTGTTCTTCCATCTTCTTCTTCTTCTTCTCACCTAGATCCAAGCCTCCAAAAGCAAAACAAAAAGGCAAATTCCTCTCTCTGTTTTCGTTTTCAGAATAAGTTCCTCGCACTTAACCTAATACAATCTTTCAGTGGAATCACTACCATGAAGAAGGTCCATCCCTCCCTAAGCAAGCGGAGCACCTCGTACAACGTCGTATCATCTTCGGCGCCGAAGAAGCTCCGGAGACTCCCTCACGTGTTCGCCAAGGTTCTCGAGCTTCCTTTCCAGTCCAGCGCCGACGTTTCAGTCCAAGAAACCTCCGACTCTTTCCGGTTCTCCGTGCCCGTGCCAGCCGGTCATCAAGTATACCACGACGAGGTTGTCAGGGCCAACGCGATAGAGATCTATCCGGGGGTGACCAAGATTGTGATACAAAAGATGAACGGTGGTGACTTTTCGGCTGAGGTGAACGATAAGTGGAGGTTTCGGCTCCCGCCTTCGACGAGACCGGAGTTGGCTAATGCGACGTACGCTGGTCAAGAACTGGTTGTCACTGTTCCAAAGAACCATGTTCATGATCATGGTGATAGTAGCACGCGAGAGGAACAAGAACAAGATGAAAATGTTAGGGTAATTGTTATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

9.35

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	314, 389
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	404, 607
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	2 cut(s)	202, 503
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	94
AcvI	CACGTG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	215, 539
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	264
AluBI	AGCT	3 cut(s)	9, 247, 286
AluI	AGCT	3 cut(s)	9, 247, 286
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	2 cut(s)	247, 508
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	281
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	2 cut(s)	19, 396
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	238, 305
AspS9I	GGNCC	2 cut(s)	181, 396
AsuC2I	CCSGG	2 cut(s)	18, 420
AsuHPI	GGTGA	5 cut(s)	47, 436, 470, 487, 605
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	2 cut(s)	43, 192
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	18, 420
BcoDI	GTCTC	2 cut(s)	247, 508
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	2 cut(s)	239, 306
BglII	AGATCT	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	18, 420
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	181, 396
BmiI	GGNNCC	2 cut(s)	237, 500
BmrFI	CCNGG	2 cut(s)	18, 420
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
Bpu10I	CCTNAGC	2 cut(s)	194, 471
BpuMI	CCSGG	2 cut(s)	18, 420
BsaAI	YACGTR	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	273, 419
BsaWI	WCCGGW	3 cut(s)	249, 339, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	295, 558
Bse8I	GATNNNNATC	1 cut(s)	410
BseAI	TCCGGA	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	273, 419
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	295, 558
BseSI	GKGCMC	1 cut(s)	354
Bsh1236I	CGCG	2 cut(s)	404, 607
BshFI	GGCC	2 cut(s)	21, 398
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	6 cut(s)	18, 250, 340, 363, 419, 518
BsiWI	CGTACG	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	247, 508
BsnI	GGCC	2 cut(s)	21, 398
Bso31I	GGTCTC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	209, 354
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	61, 411, 586
BspACI	CCGC	2 cut(s)	202, 503
BspANI	GGCC	2 cut(s)	21, 398
BspCNI	CTCAG	1 cut(s)	463
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	404, 607
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	237, 500
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	295, 558
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	273, 419
BssMI	GATC	3 cut(s)	61, 411, 586
BssNAI	GTATAC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	455, 565, 654
BstACI	GRCGYC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	200, 360, 605
BstDEI	CTNAG	2 cut(s)	194, 471
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	404, 607
BstH2I	RGCGCY	2 cut(s)	239, 306
BstHHI	GCGC	2 cut(s)	238, 305
BstKTI	GATC	3 cut(s)	64, 414, 589
BstMAI	GTCTC	2 cut(s)	247, 508
BstMBI	GATC	3 cut(s)	61, 411, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 244, 539
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	16, 418
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	2 cut(s)	404, 607
BstX2I	RGATCY	2 cut(s)	61, 411
BstYI	RGATCY	2 cut(s)	61, 411
BstZ17I	GTATAC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	21, 398
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	163, 561
Cac8I	GCNNGC	3 cut(s)	200, 360, 605
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	2 cut(s)	238, 305
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	181, 396
Csp6I	GTAC	2 cut(s)	214, 538
CviAII	CATG	4 cut(s)	172, 578, 584, 590
CviQI	GTAC	2 cut(s)	214, 538
DdeI	CTNAG	2 cut(s)	194, 471
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	3 cut(s)	63, 413, 588
DpnII	GATC	3 cut(s)	61, 411, 586
DrdI	GACNNNNNNGTC	2 cut(s)	314, 389
DseDI	GACNNNNNNGTC	2 cut(s)	314, 389
Eco130I	CCWWGG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	175, 581, 587, 593
FaiI	YATR	6 cut(s)	173, 376, 579, 585, 591, 650
FatI	CATG	4 cut(s)	171, 577, 583, 589
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	375
FokI	GGATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	237, 304
HaeII	RGCGCY	2 cut(s)	239, 306
HaeIII	GGCC	2 cut(s)	21, 398
HapII	CCGG	6 cut(s)	18, 250, 340, 363, 419, 518
HhaI	GCGC	2 cut(s)	238, 305
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	175, 581, 587, 593
Hin6I	GCGC	2 cut(s)	236, 303
HinP1I	GCGC	2 cut(s)	236, 303
HinfI	GANTC	3 cut(s)	162, 255, 332
HpaII	CCGG	6 cut(s)	18, 250, 340, 363, 419, 518
HphI	GGTGA	5 cut(s)	47, 436, 470, 487, 605
Hpy166II	GTNNAC	2 cut(s)	376, 478
Hpy188I	TCNGA	2 cut(s)	120, 331
Hpy188III	TCNNGA	4 cut(s)	250, 281, 548, 584
Hpy8I	GTNNAC	2 cut(s)	376, 478
Hpy99I	CGWCG	5 cut(s)	224, 311, 386, 514, 538
HpyAV	CCTTC	3 cut(s)	32, 172, 516
HpyCH4III	ACNGT	3 cut(s)	455, 565, 654
HpyCH4IV	ACGT	4 cut(s)	219, 264, 309, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 244, 539
HpyF3I	CTNAG	2 cut(s)	194, 471
HpySE526I	ACGT	4 cut(s)	219, 264, 309, 536
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	175, 581, 587, 593
HspAI	GCGC	2 cut(s)	236, 303
KasI	GGCGCC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	61, 411, 586
LmnI	GCTCC	3 cut(s)	204, 252, 504
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	4 cut(s)	219, 264, 309, 536
MaeIII	GTNAC	3 cut(s)	424, 458, 559
MalI	GATC	3 cut(s)	63, 413, 588
MboI	GATC	3 cut(s)	61, 411, 586
MboII	GAAGA	9 cut(s)	23, 30, 33, 36, 39, 42, 187, 222, 253
MflI	RGATCY	2 cut(s)	61, 411
MhlI	GDGCHC	2 cut(s)	209, 354
MluCI	AATT	2 cut(s)	94, 642
Mly113I	GGCGCC	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	249, 326
MmeI	TCCRAC	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	3 cut(s)	170, 582, 588
MspI	CCGG	6 cut(s)	18, 250, 340, 363, 419, 518
MspR9I	CCNGG	2 cut(s)	18, 420
MvnI	CGCG	2 cut(s)	404, 607
MwoI	GCNNNNNNNGC	3 cut(s)	204, 244, 539
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	18, 420
NdeII	GATC	3 cut(s)	61, 411, 586
NlaIII	CATG	4 cut(s)	175, 581, 587, 593
NlaIV	GGNNCC	2 cut(s)	237, 500
NmuCI	GTSAC	3 cut(s)	424, 458, 559
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	537
PleI	GAGTC	2 cut(s)	249, 326
PluTI	GGCGCC	1 cut(s)	239
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	2 cut(s)	249, 326
Ppu21I	YACGTR	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	424
PspLI	CGTACG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	237, 500
PspPI	GGNCC	2 cut(s)	181, 396
PsuI	RGATCY	2 cut(s)	61, 411
RsaI	GTAC	2 cut(s)	215, 539
RsaNI	GTAC	2 cut(s)	214, 538
RseI	CAYNNNNRTG	3 cut(s)	170, 582, 588
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	61, 411, 586
Sau96I	GGNCC	2 cut(s)	181, 396
SchI	GAGTC	2 cut(s)	249, 326
ScrFI	CCNGG	2 cut(s)	18, 420
SduI	GDGCHC	2 cut(s)	209, 354
SfoI	GGCGCC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	3 cut(s)	170, 582, 588
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	94, 642
SsiI	CCGC	2 cut(s)	202, 503
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	16, 418
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	455, 565, 654
TaiI	ACGT	4 cut(s)	222, 267, 312, 539
TaqI	TCGA	2 cut(s)	282, 509
TasI	AATT	2 cut(s)	94, 642
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	163, 568
TseFI	GTSAC	3 cut(s)	424, 458, 559
Tsp45I	GTSAC	3 cut(s)	424, 458, 559
TspDTI	ATGAA	4 cut(s)	188, 464, 572, 642
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	163, 568
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.