Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

52534259 .. 52535348

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGTCAGGAACAACAACATCGACCCCAGCAGGGTGACCAGTTGGAACCGATCAAGTACGGAGACGTGTTCAACGTCTCCGGTGAGTTGGCGTCGAAACCTATTGCCCCACGCGACGCCGCCACCATGCAGGCTGCCGAAAACCTAGTCCTCGGAGAAACTCAGAGAGGCGGTCCGGCAGCAGTCATGCAGTCGGCGGCTACATACAACGAGCGAACCGGTCTAGTCGGCCATCGTGACGCCACCGATGCCACTAGTGAGGATGGTGTTACCGTGTCGGAATCAATCAATCTCGATGGTAACAAAGTTATCACCGAAAGATTTGCTGGGCAGGTTGTGGGACAATATGTGGAGCCACCGCCTGGGGCATCTCCGGCAGCAGTAGTTCTTGAGCACGATGCAATCACAATTGGCGAGGCATTCGAGGCAACTGCTCTCTCTGCCGGTGACAAGCCGGTCGACCAAAGCGACGCAGCTGCCATTCAAGCCGCAGAGATGAGAGCCACCGGGAGTAGTAAGATATCTCCTGGAGGTTTGGCGGCTATAGCTCAGTATGCAGTGTCTGCTAACACAAGGGAGGCTGAGAAGACTAAGCTGGCTGATGTTTTAGAGGATGCCACTCAGAAGATGGGTTGTGACAAACCGGTGACTCGTGAGGATGCGAAGGCCATTATAGGAGCAGAGATAAGGAACAACCCTAATATGAGCACTACTCCTGGTGGAATTGCTGAATCAATGGCTGCTGCAGCTAGGCTTAACCAGAACATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

257

Amino Acids

26.73

Weight (kDa)

4.63

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	18 - 72	7.6e-20	Seed maturation protein
SMP	PF04927	135 - 192	3.3e-22	Seed maturation protein
SMP	PF04927	197 - 255	1.3e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	3 cut(s)	92, 117, 240
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	32, 362
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	2 cut(s)	218, 643
AgsI	TTSAA	2 cut(s)	73, 485
AhlI	ACTAGT	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	3 cut(s)	361, 526, 715
AluBI	AGCT	4 cut(s)	476, 548, 595, 749
AluI	AGCT	4 cut(s)	476, 548, 595, 749
Alw21I	GWGCWC	2 cut(s)	396, 710
Alw26I	GTCTC	2 cut(s)	57, 82
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	229, 666
ApeKI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 740, 743, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	2 cut(s)	218, 643
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	5 cut(s)	47, 95, 304, 458, 658
AvaII	GGWCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	396, 710
BbvI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 727, 730, 758
BccI	CCATC	4 cut(s)	240, 257, 290, 622
BcgI	CGANNNNNNTGC	6 cut(s)	305, 339, 413, 447, 458, 492
BciT130I	CCWGG	3 cut(s)	363, 528, 717
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	57, 82
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	4 cut(s)	146, 224, 255, 750
BfmI	CTRYAG	2 cut(s)	543, 744
BfuAI	ACCTGC	1 cut(s)	322
Bme1390I	CCNGG	4 cut(s)	363, 508, 528, 717
Bme18I	GGWCC	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	48, 354
BmrFI	CCNGG	4 cut(s)	363, 508, 528, 717
BmsI	GCATC	5 cut(s)	238, 377, 388, 604, 649
BpiI	GAAGAC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	697, 729
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	508
BsaHI	GRCGYC	3 cut(s)	92, 117, 240
BsaJI	CCNNGG	2 cut(s)	151, 362
BsaWI	WCCGGW	3 cut(s)	80, 218, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 362
Bse118I	RCCGGY	4 cut(s)	218, 443, 454, 643
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	363, 528, 717
BseDI	CCNNGG	2 cut(s)	151, 362
BseGI	GGATG	3 cut(s)	268, 619, 664
BseLI	CCNNNNNNNGG	2 cut(s)	32, 362
BseMII	CTCAG	4 cut(s)	176, 563, 573, 635
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 727, 730, 758
BseYI	CCCAGC	2 cut(s)	27, 326
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	231, 668
BshTI	ACCGGT	2 cut(s)	218, 643
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	396, 710
BsiSI	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 507, 644
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	32, 362
BsmAI	GTCTC	2 cut(s)	57, 82
BsmBI	CGTCTC	2 cut(s)	57, 82
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	231, 668
Bsp1286I	GDGCHC	2 cut(s)	396, 710
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
BspANI	GGCC	2 cut(s)	231, 668
BspCNI	CTCAG	4 cut(s)	175, 562, 574, 634
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	48, 354
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	322
BsrFI	RCCGGY	4 cut(s)	218, 443, 454, 643
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	4 cut(s)	218, 443, 454, 643
BssECI	CCNNGG	2 cut(s)	151, 362
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	3 cut(s)	92, 117, 240
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	3 cut(s)	363, 528, 717
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	3 cut(s)	92, 117, 240
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	132, 597
BstDEI	CTNAG	5 cut(s)	162, 549, 582, 591, 621
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	268, 619, 664
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	57, 82
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 746
BstNI	CCWGG	3 cut(s)	363, 528, 717
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	361, 506, 526, 715
BstSFI	CTRYAG	2 cut(s)	543, 744
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 727, 730, 758
BstV2I	GAAGAC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	231, 668
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	268, 619, 664
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	132, 597
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr10I	RCCGGY	4 cut(s)	218, 443, 454, 643
Cfr13I	GGNCC	1 cut(s)	173
CpoI	CGGWCCG	1 cut(s)	173
CseI	GACGC	4 cut(s)	81, 125, 248, 479
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	2 cut(s)	218, 643
CspI	CGGWCCG	1 cut(s)	173
CviAII	CATG	2 cut(s)	127, 187
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	5 cut(s)	162, 549, 582, 591, 621
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	361, 526, 715
EcoRV	GATATC	1 cut(s)	522
Esp3I	CGTCTC	2 cut(s)	57, 82
FaeI	CATG	2 cut(s)	130, 190
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	126, 186
FblI	GTMKAC	1 cut(s)	459
FokI	GGATG	3 cut(s)	275, 626, 671
FspBI	CTAG	4 cut(s)	146, 224, 255, 750
GsaI	CCCAGC	2 cut(s)	31, 330
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	231, 668
HapII	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 507, 644
HgaI	GACGC	4 cut(s)	81, 125, 248, 479
Hin1I	GRCGYC	3 cut(s)	92, 117, 240
Hin1II	CATG	2 cut(s)	130, 190
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	4, 281, 649, 731
HpaII	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 507, 644
HphI	GGTGA	5 cut(s)	47, 95, 304, 458, 658
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	155, 165, 280, 624
Hpy188III	TCNNGA	5 cut(s)	8, 236, 293, 389, 653
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	3 cut(s)	97, 119, 473
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	66, 75
HpyCH4V	TGCA	5 cut(s)	130, 190, 401, 557, 746
HpyF10VI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 746
HpyF3I	CTNAG	5 cut(s)	162, 549, 582, 591, 621
HpySE526I	ACGT	2 cut(s)	66, 75
Hsp92I	GRCGYC	3 cut(s)	92, 117, 240
Hsp92II	CATG	2 cut(s)	130, 190
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	352, 677
Lsp1109I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 727, 730, 758
LweI	GCATC	5 cut(s)	238, 377, 388, 604, 649
MaeI	CTAG	4 cut(s)	146, 224, 255, 750
MaeII	ACGT	2 cut(s)	66, 75
MaeIII	GTNAC	7 cut(s)	35, 236, 268, 299, 446, 635, 646
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	598, 637
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	396, 710
MluCI	AATT	2 cut(s)	408, 723
MlyI	GAGTC	2 cut(s)	13, 643
MmeI	TCCRAC	2 cut(s)	24, 258
MnlI	CCTC	9 cut(s)	161, 161, 253, 409, 418, 524, 571, 604, 649
MseI	TTAA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 507, 644
MspR9I	CCNGG	4 cut(s)	363, 508, 528, 717
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	3 cut(s)	363, 528, 717
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 746
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	130, 190
NlaIV	GGNNCC	2 cut(s)	48, 354
NmuCI	GTSAC	5 cut(s)	35, 236, 446, 635, 646
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 465
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	281, 731
PflMI	CCANNNNNTGG	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	526
PinAI	ACCGGT	2 cut(s)	218, 643
PleI	GAGTC	2 cut(s)	12, 643
PpsI	GAGTC	2 cut(s)	12, 643
Psp6I	CCWGG	3 cut(s)	361, 526, 715
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	2 cut(s)	27, 326
PspGI	CCWGG	3 cut(s)	361, 526, 715
PspN4I	GGNNCC	2 cut(s)	48, 354
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
Rsr2I	CGGWCCG	1 cut(s)	173
RsrII	CGGWCCG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	756
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	13, 643
ScrFI	CCNGG	4 cut(s)	363, 508, 528, 717
SduI	GDGCHC	2 cut(s)	396, 710
SfaNI	GCATC	5 cut(s)	238, 377, 388, 604, 649
SfcI	CTRYAG	2 cut(s)	543, 744
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	2 cut(s)	408, 723
SsiI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
SspMI	CTAG	4 cut(s)	146, 224, 255, 750
StyD4I	CCNGG	4 cut(s)	361, 506, 526, 715
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	69, 78
TaqI	TCGA	5 cut(s)	22, 95, 294, 423, 459
TasI	AATT	2 cut(s)	408, 723
TauI	GCSGC	4 cut(s)	122, 200, 491, 542
TfiI	GAWTC	2 cut(s)	281, 731
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	5 cut(s)	35, 236, 446, 635, 646
TseI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 740, 743, 746
Tsp45I	GTSAC	5 cut(s)	35, 236, 446, 635, 646
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	4 cut(s)	146, 224, 255, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.