Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000750.1

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

6833 .. 8890

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000750.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgagtcaagaacagccgaggaggcctcagcaggggcaagaaccggtcaagtactgcgacattttcaatgtctccgacgacctagcatccaagacggtagcgccacaagatgctgcgatgatgcagaccgctgaaaccatggtgttggggcagacccagaagggcggtccggccgctgtcatgcagtcagccgccacccgaaacgagagagctggcctcgtccgccacgatgaggctactgatgtagctggacatgaaggtgtcactgttacagagattgatgtccctggaaggctaacaatcactgaatcagttggtggacaggttattggacagtatgtgcagccaacaccggttacacaagtagctgcgggaggcttcatgcagcagaatgcaataactataggggaggcactggaggcctcggcccaaacagctggggataggccagtggatcagagcgatgccgcggcaattcaggctgcagaggtgcgagcaacaggcagaaatgtgataattcccgggggcctggccgcgacggctcaatctgccgcagctcacaatgcggggactgacagggagcaagacaagattaaggtttctgatgtgctctcgggtgcgaccgccaagttacccgggaacaaggcggcaactaggcaggatgccgaaggagtagtgagtgccgagttgaggaacaacccggacatgaccacacgtccaggtggagttgcggcttctgttactgcagctgccaggctgaacgaaaatatgaatgatgccgaaggagtggtgagtgccgagttgaggaacaacccggacatgaccacacgtccaggtggagttgcggcttctgttactgcagctgccaggctgaacgaaaatatgaatgtgaacacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

299

Amino Acids

30.82

Weight (kDa)

4.8

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	470, 536
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	171, 531
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	4 cut(s)	32, 232, 690, 804
AflIII	ACRYGT	3 cut(s)	713, 827, 894
AgeI	ACCGGT	2 cut(s)	43, 352
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	2 cut(s)	714, 828
AjiI	CACGTC	2 cut(s)	716, 830
AjnI	CCWGG	6 cut(s)	286, 528, 718, 752, 832, 866
AluBI	AGCT	7 cut(s)	212, 248, 368, 437, 557, 749, 863
AluI	AGCT	7 cut(s)	212, 248, 368, 437, 557, 749, 863
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	462
Ama87I	CYCGRG	3 cut(s)	521, 613, 635
AoxI	GGCC	8 cut(s)	23, 171, 214, 420, 426, 446, 526, 531
AsiGI	ACCGGT	2 cut(s)	43, 352
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	167, 427, 526
AsuC2I	CCSGG	6 cut(s)	522, 523, 636, 637, 701, 815
AsuHPI	GGTGA	1 cut(s)	802
AvaI	CYCGRG	3 cut(s)	521, 613, 635
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	6 cut(s)	288, 530, 720, 754, 834, 868
BcnI	CCSGG	6 cut(s)	522, 523, 636, 637, 701, 815
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	83, 654
BfmI	CTRYAG	4 cut(s)	402, 483, 744, 858
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	2 cut(s)	22, 539
BmcAI	AGTACT	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	2 cut(s)	714, 828
BmeT110I	CYCGRG	3 cut(s)	521, 613, 635
BmgBI	CACGTC	2 cut(s)	716, 830
BmgT120I	GGNCC	3 cut(s)	167, 427, 526
BmiI	GGNNCC	1 cut(s)	527
BmsI	GCATC	6 cut(s)	95, 100, 111, 454, 652, 766
BplI	GAGNNNNNCTC	4 cut(s)	10, 42, 201, 233
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	27
BpuMI	CCSGG	6 cut(s)	522, 523, 636, 637, 701, 815
BsaAI	YACGTR	1 cut(s)	897
BsaJI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 635
BsaWI	WCCGGW	2 cut(s)	43, 352
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 232, 690, 804
Bse118I	RCCGGY	2 cut(s)	43, 352
Bse1I	ACTGG	2 cut(s)	420, 449
BseBI	CCWGG	6 cut(s)	288, 530, 720, 754, 834, 868
BseDI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 635
BseGI	GGATG	2 cut(s)	86, 667
BseLI	CCNNNNNNNGG	4 cut(s)	32, 232, 690, 804
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	420, 449
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	470, 536
Bsh1285I	CGRYCG	2 cut(s)	174, 624
BshFI	GGCC	8 cut(s)	25, 173, 216, 422, 428, 448, 528, 533
BshTI	ACCGGT	2 cut(s)	43, 352
BsiEI	CGRYCG	2 cut(s)	174, 624
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	3 cut(s)	521, 613, 635
BsiSI	CCGG	7 cut(s)	44, 170, 353, 522, 636, 701, 815
BslFI	GGGAC	2 cut(s)	269, 583
BslI	CCNNNNNNNGG	4 cut(s)	32, 232, 690, 804
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	269, 583
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	8 cut(s)	25, 173, 216, 422, 428, 448, 528, 533
BsoBI	CYCGRG	3 cut(s)	521, 613, 635
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	8 cut(s)	25, 173, 216, 422, 428, 448, 528, 533
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	470, 536
BspLI	GGNNCC	1 cut(s)	527
BspMAI	CTGCAG	3 cut(s)	487, 748, 862
BspPI	GGATC	1 cut(s)	462
BsrFI	RCCGGY	2 cut(s)	43, 352
BsrI	ACTGG	2 cut(s)	420, 449
BssAI	RCCGGY	2 cut(s)	43, 352
BssECI	CCNNGG	8 cut(s)	17, 138, 286, 423, 468, 521, 522, 635
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	6 cut(s)	288, 530, 720, 754, 834, 868
Bst4CI	ACNGT	3 cut(s)	97, 268, 336
BstBAI	YACGTR	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	214, 495
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	138, 468
BstF5I	GGATG	2 cut(s)	86, 667
BstFNI	CGCG	2 cut(s)	470, 536
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	2 cut(s)	174, 624
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
BstNI	CCWGG	6 cut(s)	288, 530, 720, 754, 834, 868
BstSFI	CTRYAG	4 cut(s)	402, 483, 744, 858
BstUI	CGCG	2 cut(s)	470, 536
BstXI	CCANNNNNNTGG	2 cut(s)	145, 437
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	8 cut(s)	25, 173, 216, 422, 428, 448, 528, 533
BtgI	CCRYGG	2 cut(s)	138, 468
BtgZI	GCGATG	2 cut(s)	131, 477
BtrI	CACGTC	2 cut(s)	716, 830
BtsCI	GGATG	2 cut(s)	86, 667
BtsIMutI	CAGTG	4 cut(s)	264, 303, 413, 456
Cac8I	GCNNGC	2 cut(s)	214, 495
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	43, 352
Cfr13I	GGNCC	3 cut(s)	167, 427, 526
Cfr42I	CCGCGG	1 cut(s)	471
Cfr9I	CCCGGG	2 cut(s)	521, 635
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	52
CspAI	ACCGGT	2 cut(s)	43, 352
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	6 cut(s)	139, 181, 254, 382, 706, 820
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	2 cut(s)	714, 828
EaeI	YGGCCR	2 cut(s)	171, 531
EagI	CGGCCG	1 cut(s)	171
Eam1105I	GACNNNNNGTC	2 cut(s)	714, 828
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	2 cut(s)	25, 422
Eco47I	GGWCC	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	171
Eco88I	CYCGRG	3 cut(s)	521, 613, 635
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	6 cut(s)	286, 528, 718, 752, 832, 866
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	6 cut(s)	142, 184, 257, 385, 709, 823
FaqI	GGGAC	2 cut(s)	269, 583
FatI	CATG	6 cut(s)	138, 180, 253, 381, 705, 819
FauI	CCCGC	2 cut(s)	364, 559
FokI	GGATG	2 cut(s)	73, 674
FspBI	CTAG	2 cut(s)	83, 654
GlaI	GCGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	8 cut(s)	25, 173, 216, 422, 428, 448, 528, 533
HapII	CCGG	7 cut(s)	44, 170, 353, 522, 636, 701, 815
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	6 cut(s)	142, 184, 257, 385, 709, 823
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	4, 308
HpaII	CCGG	7 cut(s)	44, 170, 353, 522, 636, 701, 815
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	2 cut(s)	320, 892
Hpy188I	TCNGA	3 cut(s)	76, 459, 604
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	320, 892
Hpy99I	CGWCG	2 cut(s)	80, 541
HpyAV	CCTTC	5 cut(s)	154, 251, 285, 662, 776
HpyCH4III	ACNGT	3 cut(s)	97, 268, 336
HpyCH4IV	ACGT	3 cut(s)	715, 829, 896
HpyCH4V	TGCA	8 cut(s)	124, 184, 343, 385, 395, 485, 746, 860
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	3 cut(s)	715, 829, 896
Hsp92II	CATG	6 cut(s)	142, 184, 257, 385, 709, 823
HspAI	GCGC	1 cut(s)	101
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	580
LweI	GCATC	6 cut(s)	95, 100, 111, 454, 652, 766
MaeI	CTAG	2 cut(s)	83, 654
MaeII	ACGT	3 cut(s)	715, 829, 896
MaeIII	GTNAC	6 cut(s)	262, 268, 355, 630, 739, 853
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	2 cut(s)	474, 516
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	6 cut(s)	131, 176, 437, 470, 749, 863
MspI	CCGG	7 cut(s)	44, 170, 353, 522, 636, 701, 815
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	6 cut(s)	288, 530, 720, 754, 834, 868
MvnI	CGCG	2 cut(s)	470, 536
MwoI	GCNNNNNNNGC	8 cut(s)	22, 222, 419, 434, 479, 539, 548, 563
NciI	CCSGG	6 cut(s)	522, 523, 636, 637, 701, 815
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	6 cut(s)	142, 184, 257, 385, 709, 823
NlaIV	GGNNCC	1 cut(s)	527
NmeAIII	GCCGAG	4 cut(s)	42, 404, 709, 823
NmuCI	GTSAC	1 cut(s)	262
PceI	AGGCCT	2 cut(s)	25, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	308
PinAI	ACCGGT	2 cut(s)	43, 352
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	897
Psp6I	CCWGG	6 cut(s)	286, 528, 718, 752, 832, 866
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	6 cut(s)	286, 528, 718, 752, 832, 866
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	3 cut(s)	167, 427, 526
PstI	CTGCAG	3 cut(s)	487, 748, 862
PvuII	CAGCTG	3 cut(s)	437, 749, 863
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	258
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	167, 427, 526
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	6 cut(s)	95, 100, 111, 454, 652, 766
SfcI	CTRYAG	4 cut(s)	402, 483, 744, 858
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	2 cut(s)	523, 637
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	474, 516
SseBI	AGGCCT	2 cut(s)	25, 422
SspMI	CTAG	2 cut(s)	83, 654
StuI	AGGCCT	2 cut(s)	25, 422
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	97, 268, 336
TaiI	ACGT	3 cut(s)	718, 832, 899
TasI	AATT	2 cut(s)	474, 516
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	9 cut(s)	176, 194, 470, 473, 536, 554, 650, 734, 848
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	4 cut(s)	271, 310, 420, 456
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	270, 370, 785, 899
TspMI	CCCGGG	2 cut(s)	521, 635
TspRI	CASTG	4 cut(s)	271, 310, 420, 456
VpaK11BI	GGWCC	1 cut(s)	167
XmaI	CCCGGG	2 cut(s)	521, 635
XspI	CTAG	2 cut(s)	83, 654
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.