Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

1080172 .. 1081936

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCCAGGAACAGCCACGGAGGCCTCAGGAAGACAAACAGCAGGACAAGCCTCAGCCCATCAAATACGGCGACGTCTTTTCCGTCTCTGCGGACCTCGCAAAGAAGCCCATTGCACCACAAGATGCTAACATGATGCAGACCGCTGAGACCATGGTGTTTGGGAAGACCCAGAAGGGCGGTCCGGCCGCTGTCATGCAGTCGGCCGCCACCCGAAACGAAAGATCCGGCCTTGTTCGCCATGACCAGGCCACGGATGTTGGTGGAAATGAAGGTGTCACTGTCACAGAGACTGATGTCCCTGGAAGCCGCATCGTCACTGAAGCAGTTGGTGGACAGGTGATTGGGCAGTATGTGCAGCCCACGCCAGTGTCTCAGGTAGCTGCGGGGGGATTTATGGAGCAGAACGCAATCACTATCGGGGAAGCACTGGAAGCGTCCGCCCAAACAGCCGGTGATAAGCCAATTGATCAAAGTGATGCCGCAGCCATTCAGGCTGCGGAGGTGAGAGCCACGGGCAGCAATGTGATAAGCCCAGGTGGGCTAGCTGCCATGGCTCAATCTGCGGCAGCATACAATGCCGGGACTCTGCGGGAGCAGGACAAGATCAAGCTCACAGATGTCCTCTCGGGTGCTACTGAGAAACTGCCCGCGGACAAGGCGGCGACGAGGCAGGATGCTGAAGGAATTGCGAGTGCTGAGCTCCGAAACAACCCGGAAATGGGAACGCGTCCTGGGGGAGTGGCGGCTTCCGTGACCGCAGCTGCAAGGCTCAATGAGAATATAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

265

Amino Acids

27.33

Weight (kDa)

4.92

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccII	CGCG	2 cut(s)	653, 730
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	2 cut(s)	186, 204
AcuI	CTGAAG	2 cut(s)	342, 702
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	4 cut(s)	247, 253, 721, 722
AflIII	ACRYGT	1 cut(s)	728
AjnI	CCWGG	5 cut(s)	6, 246, 301, 535, 733
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	5 cut(s)	383, 548, 613, 703, 764
AluI	AGCT	5 cut(s)	383, 548, 613, 703, 764
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	4 cut(s)	91, 143, 284, 378
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	5 cut(s)	23, 186, 204, 229, 249
ApeKI	GCWGC	9 cut(s)	358, 383, 485, 497, 519, 548, 569, 761, 764
AspS9I	GGNCC	2 cut(s)	94, 182
AsuC2I	CCSGG	2 cut(s)	583, 716
AsuHPI	GGTGA	3 cut(s)	352, 467, 517
AsuNHI	GCTAGC	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	94, 182
AxyI	CCTNAGG	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	39, 173
Bbv12I	GWGCWC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	9 cut(s)	370, 370, 484, 497, 531, 535, 581, 751, 773
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	5 cut(s)	8, 248, 303, 537, 735
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	583, 716
BcoDI	GTCTC	4 cut(s)	91, 143, 284, 378
BfaI	CTAG	1 cut(s)	545
BglI	GCCNNNNNGGC	2 cut(s)	22, 494
BlpI	GCTNAGC	1 cut(s)	699
Bme1390I	CCNGG	7 cut(s)	8, 248, 303, 537, 583, 716, 735
Bme18I	GGWCC	2 cut(s)	94, 182
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	94, 182
BmrFI	CCNGG	7 cut(s)	8, 248, 303, 537, 583, 716, 735
BmsI	GCATC	5 cut(s)	115, 126, 321, 469, 667
BmtI	GCTAGC	1 cut(s)	548
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	2 cut(s)	39, 173
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuMI	CCSGG	2 cut(s)	583, 716
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	9 cut(s)	17, 153, 252, 301, 513, 535, 552, 651, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 253, 721, 722
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	368, 435
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	2 cut(s)	111, 529
BseBI	CCWGG	5 cut(s)	8, 248, 303, 537, 735
BseDI	CCNNGG	9 cut(s)	17, 153, 252, 301, 513, 535, 552, 651, 734
BseGI	GGATG	2 cut(s)	262, 682
BseLI	CCNNNNNNNGG	4 cut(s)	247, 253, 721, 722
BseMI	GCAATG	2 cut(s)	111, 529
BseMII	CTCAG	6 cut(s)	41, 68, 138, 389, 630, 690
BseNI	ACTGG	2 cut(s)	368, 435
BseX3I	CGGCCG	2 cut(s)	186, 204
BseXI	GCAGC	9 cut(s)	370, 370, 484, 497, 531, 535, 581, 751, 773
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	2 cut(s)	653, 730
Bsh1285I	CGRYCG	2 cut(s)	189, 207
BshFI	GGCC	5 cut(s)	25, 188, 206, 231, 251
BsiEI	CGRYCG	2 cut(s)	189, 207
BsiHKAI	GWGCWC	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	5 cut(s)	185, 228, 453, 582, 716
BslFI	GGGAC	2 cut(s)	284, 598
BslI	CCNNNNNNNGG	4 cut(s)	247, 253, 721, 722
BsmAI	GTCTC	4 cut(s)	91, 143, 284, 378
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	284, 598
BsnI	GGCC	5 cut(s)	25, 188, 206, 231, 251
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	3 cut(s)	224, 469, 606
Bsp1720I	GCTNAGC	1 cut(s)	699
Bsp19I	CCATGG	2 cut(s)	153, 552
BspANI	GGCC	5 cut(s)	25, 188, 206, 231, 251
BspCNI	CTCAG	6 cut(s)	40, 67, 139, 388, 631, 691
BspFNI	CGCG	2 cut(s)	653, 730
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	111, 529
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	368, 435
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	9 cut(s)	17, 153, 252, 301, 513, 535, 552, 651, 734
BssMI	GATC	3 cut(s)	224, 469, 606
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	153, 552
Bst2UI	CCWGG	5 cut(s)	8, 248, 303, 537, 735
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	2 cut(s)	355, 578
BstC8I	GCNNGC	2 cut(s)	546, 651
BstDEI	CTNAG	6 cut(s)	27, 54, 147, 375, 639, 699
BstDSI	CCRYGG	6 cut(s)	17, 153, 252, 513, 552, 651
BstF5I	GGATG	2 cut(s)	262, 682
BstFNI	CGCG	2 cut(s)	653, 730
BstKTI	GATC	3 cut(s)	227, 472, 609
BstMAI	GTCTC	4 cut(s)	91, 143, 284, 378
BstMBI	GATC	3 cut(s)	224, 469, 606
BstMCI	CGRYCG	2 cut(s)	189, 207
BstNI	CCWGG	5 cut(s)	8, 248, 303, 537, 735
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	7 cut(s)	6, 246, 301, 535, 581, 714, 733
BstUI	CGCG	2 cut(s)	653, 730
BstV1I	GCAGC	9 cut(s)	370, 370, 484, 497, 531, 535, 581, 751, 773
BstV2I	GAAGAC	2 cut(s)	39, 173
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BstZI	CGGCCG	2 cut(s)	186, 204
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	5 cut(s)	25, 188, 206, 231, 251
BtgI	CCRYGG	6 cut(s)	17, 153, 252, 513, 552, 651
BtsCI	GGATG	2 cut(s)	262, 682
BtsIMutI	CAGTG	4 cut(s)	279, 318, 375, 428
Cac8I	GCNNGC	2 cut(s)	546, 651
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	94, 182
Cfr42I	CCGCGG	1 cut(s)	654
CpoI	CGGWCCG	1 cut(s)	182
CseI	GACGC	2 cut(s)	426, 719
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CspI	CGGWCCG	1 cut(s)	182
CviAII	CATG	5 cut(s)	133, 154, 196, 242, 553
DdeI	CTNAG	6 cut(s)	27, 54, 147, 375, 639, 699
DpnI	GATC	3 cut(s)	226, 471, 608
DpnII	GATC	3 cut(s)	224, 469, 606
EaeI	YGGCCR	2 cut(s)	186, 204
EagI	CGGCCG	2 cut(s)	186, 204
EciI	GGCGGA	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	703
EclXI	CGGCCG	2 cut(s)	186, 204
Eco130I	CCWWGG	2 cut(s)	153, 552
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	94, 182
Eco52I	CGGCCG	2 cut(s)	186, 204
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	2 cut(s)	342, 702
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	703
EcoRII	CCWGG	5 cut(s)	6, 246, 301, 535, 733
EcoT14I	CCWWGG	2 cut(s)	153, 552
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	153, 552
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	5 cut(s)	136, 157, 199, 245, 556
FaiI	YATR	9 cut(s)	134, 155, 197, 243, 354, 398, 554, 574, 785
FaqI	GGGAC	2 cut(s)	284, 598
FatI	CATG	5 cut(s)	132, 153, 195, 241, 552
FauI	CCCGC	3 cut(s)	379, 585, 658
FbaI	TGATCA	1 cut(s)	469
FokI	GGATG	2 cut(s)	269, 689
FriOI	GRGCYC	1 cut(s)	705
FspBI	CTAG	1 cut(s)	545
HaeIII	GGCC	5 cut(s)	25, 188, 206, 231, 251
HapII	CCGG	5 cut(s)	185, 228, 453, 582, 716
HgaI	GACGC	2 cut(s)	426, 719
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	136, 157, 199, 245, 556
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	5 cut(s)	185, 228, 453, 582, 716
HphI	GGTGA	3 cut(s)	352, 467, 517
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	707
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	2 cut(s)	77, 670
HpyAV	CCTTC	3 cut(s)	169, 266, 677
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	116, 139, 199, 358, 767
HpyF3I	CTNAG	6 cut(s)	27, 54, 147, 375, 639, 699
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	136, 157, 199, 245, 556
Ksp22I	TGATCA	1 cut(s)	469
KspI	CCGCGG	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	224, 469, 606
LmnI	GCTCC	3 cut(s)	400, 595, 708
Lsp1109I	GCAGC	9 cut(s)	370, 370, 484, 497, 531, 535, 581, 751, 773
LweI	GCATC	5 cut(s)	115, 126, 321, 469, 667
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	4 cut(s)	277, 283, 316, 754
MalI	GATC	3 cut(s)	226, 471, 608
MboI	GATC	3 cut(s)	224, 469, 606
MboII	GAAGA	2 cut(s)	44, 178
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	2 cut(s)	465, 687
MluI	ACGCGT	1 cut(s)	728
MlyI	GAGTC	1 cut(s)	580
MnlI	CCTC	7 cut(s)	15, 36, 63, 107, 496, 635, 663
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	4 cut(s)	146, 191, 653, 764
MspI	CCGG	5 cut(s)	185, 228, 453, 582, 716
MspR9I	CCNGG	7 cut(s)	8, 248, 303, 537, 583, 716, 735
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	5 cut(s)	8, 248, 303, 537, 735
MvnI	CGCG	2 cut(s)	653, 730
NciI	CCSGG	2 cut(s)	583, 716
NcoI	CCATGG	2 cut(s)	153, 552
NdeII	GATC	3 cut(s)	224, 469, 606
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	5 cut(s)	136, 157, 199, 245, 556
NmuCI	GTSAC	4 cut(s)	277, 283, 316, 754
OliI	CACNNNNGTG	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshAI	GACNNNNGTC	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	705
Psp6I	CCWGG	5 cut(s)	6, 246, 301, 535, 733
PspGI	CCWGG	5 cut(s)	6, 246, 301, 535, 733
PspPI	GGNCC	2 cut(s)	94, 182
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	368
Rsr2I	CGGWCCG	1 cut(s)	182
RsrII	CGGWCCG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	705
SacII	CCGCGG	1 cut(s)	654
Sau3AI	GATC	3 cut(s)	224, 469, 606
Sau96I	GGNCC	2 cut(s)	94, 182
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	7 cut(s)	8, 248, 303, 537, 583, 716, 735
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	5 cut(s)	115, 126, 321, 469, 667
Sfr303I	CCGCGG	1 cut(s)	654
SgrBI	CCGCGG	1 cut(s)	654
SinI	GGWCC	2 cut(s)	94, 182
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	465, 687
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	705
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	7 cut(s)	6, 246, 301, 535, 581, 714, 733
StyI	CCWWGG	2 cut(s)	153, 552
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	78
TasI	AATT	2 cut(s)	465, 687
TauI	GCSGC	7 cut(s)	191, 209, 312, 485, 569, 665, 749
TscAI	CASTG	4 cut(s)	286, 325, 375, 435
TseFI	GTSAC	4 cut(s)	277, 283, 316, 754
TseI	GCWGC	9 cut(s)	358, 383, 485, 497, 519, 548, 569, 761, 764
Tsp45I	GTSAC	4 cut(s)	277, 283, 316, 754
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	4 cut(s)	34, 73, 269, 742
TspRI	CASTG	4 cut(s)	286, 325, 375, 435
VpaK11BI	GGWCC	2 cut(s)	94, 182
XspI	CTAG	1 cut(s)	545
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.