Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000043.1

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

43562 .. 44649

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000043.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgagtcagaaacaacaacatcgaccccagcagggtgaccagctggaaccgatcaagtacggcgacgtgttcaacgtctccggtgagttggcgtcgaaacctatcgccccacgcgacgccgccaccatgcaggctgccgaaaatctagtcctcggagaaactcagagaggcggtccggcagcagtcatgcagtcggcggctacatacaacgagcgagccggtctagtcggccatcgtgacgccaccgatgccactagtgaggatggtgttaccgtgtcggaatcaatcaatctcgatggtaacaaagttatcaccgaaagagttgctgggcaggttgtgggacaatatgtggagccaccgcctggagcatctccggcagcagtagttcttgagcacgatgcaatcacaattggcgaggcattcgaggcaactgctctctctgccggtgacaagccggtcgaccaaagcgacgcagctgccattcaagccgcagagatgagagccactgggaatagtgagatatctccgggaggtttggcggctatagctcagtatgcagtgtctgctaacacaagggaggctgagaagactaagctggctgatgttttagaggatgccactcagaagatgggttgtgacaaaccggtgactcgtgaggatgcgaaggccattataggagcagagataaggaacaaccctaatatgagcactactggtggaattgctgaatcaatggctgctgcagctaggcttaaccagaacatatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

256

Amino Acids

26.58

Weight (kDa)

4.63

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	3 cut(s)	92, 117, 240
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	32, 362
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	2 cut(s)	73, 485
AhlI	ACTAGT	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	5 cut(s)	43, 476, 548, 595, 746
AluI	AGCT	5 cut(s)	43, 476, 548, 595, 746
Alw21I	GWGCWC	2 cut(s)	396, 710
Alw26I	GTCTC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	229, 666
ApeKI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 737, 740, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	5 cut(s)	47, 95, 304, 458, 658
AvaII	GGWCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	396, 710
BbvI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 724, 727, 755
BccI	CCATC	4 cut(s)	240, 257, 290, 622
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	6 cut(s)	305, 339, 413, 447, 458, 492
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	4 cut(s)	146, 224, 255, 747
BfmI	CTRYAG	2 cut(s)	543, 741
BfuAI	ACCTGC	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	363, 528
Bme18I	GGWCC	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	48, 354
BmrFI	CCNGG	2 cut(s)	363, 528
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	5 cut(s)	238, 377, 388, 604, 649
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	528
BsaHI	GRCGYC	3 cut(s)	92, 117, 240
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	80, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 362
Bse118I	RCCGGY	4 cut(s)	218, 443, 454, 643
Bse1I	ACTGG	2 cut(s)	511, 718
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	268, 619, 664
BseLI	CCNNNNNNNGG	2 cut(s)	32, 362
BseMII	CTCAG	4 cut(s)	176, 563, 573, 635
BseNI	ACTGG	2 cut(s)	511, 718
BseXI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 724, 727, 755
BseYI	CCCAGC	2 cut(s)	27, 326
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	231, 668
BshTI	ACCGGT	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	396, 710
BsiSI	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 527, 644
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	32, 362
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	231, 668
Bsp1286I	GDGCHC	2 cut(s)	396, 710
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
BspANI	GGCC	2 cut(s)	231, 668
BspCNI	CTCAG	4 cut(s)	175, 562, 574, 634
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	48, 354
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	322
BsrFI	RCCGGY	4 cut(s)	218, 443, 454, 643
BsrI	ACTGG	2 cut(s)	511, 718
BssAI	RCCGGY	4 cut(s)	218, 443, 454, 643
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	3 cut(s)	92, 117, 240
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	3 cut(s)	92, 117, 240
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	132, 216, 597
BstDEI	CTNAG	5 cut(s)	162, 549, 582, 591, 621
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	268, 619, 664
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 743
BstNI	CCWGG	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	361, 526
BstSFI	CTRYAG	2 cut(s)	543, 741
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 724, 727, 755
BstV2I	GAAGAC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	231, 668
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	268, 619, 664
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	504, 564
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	132, 216, 597
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr10I	RCCGGY	4 cut(s)	218, 443, 454, 643
Cfr13I	GGNCC	1 cut(s)	173
CpoI	CGGWCCG	1 cut(s)	173
CseI	GACGC	4 cut(s)	81, 125, 248, 479
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	643
CspI	CGGWCCG	1 cut(s)	173
CviAII	CATG	2 cut(s)	127, 187
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	5 cut(s)	162, 549, 582, 591, 621
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	130, 190
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	126, 186
FblI	GTMKAC	1 cut(s)	459
FokI	GGATG	3 cut(s)	275, 626, 671
FspBI	CTAG	4 cut(s)	146, 224, 255, 747
GsaI	CCCAGC	2 cut(s)	31, 330
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	231, 668
HapII	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 527, 644
HgaI	GACGC	4 cut(s)	81, 125, 248, 479
Hin1I	GRCGYC	3 cut(s)	92, 117, 240
Hin1II	CATG	2 cut(s)	130, 190
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	4, 281, 649, 728
HpaII	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 527, 644
HphI	GGTGA	5 cut(s)	47, 95, 304, 458, 658
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	5 cut(s)	9, 155, 165, 280, 624
Hpy188III	TCNNGA	4 cut(s)	236, 293, 389, 653
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	4 cut(s)	68, 97, 119, 473
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	66, 75
HpyCH4V	TGCA	5 cut(s)	130, 190, 401, 557, 743
HpyF10VI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 743
HpyF3I	CTNAG	5 cut(s)	162, 549, 582, 591, 621
HpySE526I	ACGT	2 cut(s)	66, 75
Hsp92I	GRCGYC	3 cut(s)	92, 117, 240
Hsp92II	CATG	2 cut(s)	130, 190
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	352, 365, 677
Lsp1109I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 724, 727, 755
LweI	GCATC	5 cut(s)	238, 377, 388, 604, 649
MaeI	CTAG	4 cut(s)	146, 224, 255, 747
MaeII	ACGT	2 cut(s)	66, 75
MaeIII	GTNAC	7 cut(s)	35, 236, 268, 299, 446, 635, 646
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	598, 637
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	396, 710
MluCI	AATT	2 cut(s)	408, 720
MlyI	GAGTC	2 cut(s)	13, 643
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	9 cut(s)	161, 161, 253, 409, 418, 524, 571, 604, 649
MseI	TTAA	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	43, 476
MspI	CCGG	8 cut(s)	81, 176, 219, 374, 444, 455, 527, 644
MspR9I	CCNGG	2 cut(s)	363, 528
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	9 cut(s)	248, 374, 425, 440, 485, 545, 554, 563, 743
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	130, 190
NlaIV	GGNNCC	2 cut(s)	48, 354
NmuCI	GTSAC	5 cut(s)	35, 236, 446, 635, 646
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 111, 465
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	281, 728
PflMI	CCANNNNNTGG	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	643
PleI	GAGTC	2 cut(s)	12, 643
PpsI	GAGTC	2 cut(s)	12, 643
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	2 cut(s)	27, 326
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	48, 354
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	563
PvuII	CAGCTG	2 cut(s)	43, 476
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
Rsr2I	CGGWCCG	1 cut(s)	173
RsrII	CGGWCCG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	13, 643
ScrFI	CCNGG	2 cut(s)	363, 528
SduI	GDGCHC	2 cut(s)	396, 710
SfaNI	GCATC	5 cut(s)	238, 377, 388, 604, 649
SfcI	CTRYAG	2 cut(s)	543, 741
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	2 cut(s)	408, 720
SsiI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
SspMI	CTAG	4 cut(s)	146, 224, 255, 747
StyD4I	CCNGG	2 cut(s)	361, 526
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	69, 78
TaqI	TCGA	5 cut(s)	22, 95, 294, 423, 459
TasI	AATT	2 cut(s)	408, 720
TauI	GCSGC	4 cut(s)	122, 200, 491, 542
TfiI	GAWTC	2 cut(s)	281, 728
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	2 cut(s)	511, 564
TseFI	GTSAC	5 cut(s)	35, 236, 446, 635, 646
TseI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 737, 740, 743
Tsp45I	GTSAC	5 cut(s)	35, 236, 446, 635, 646
TspRI	CASTG	2 cut(s)	511, 564
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	4 cut(s)	146, 224, 255, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.