Prupe.8G238700_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002798
Physical Location & Seq
Forward (+)
21005805 .. 21007137
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G238700.1

Sequence Viewer

Length: 780 bp
ATGAGCCAGGAACAGCCACGGAGACGACCTGACCAGTCCCCCGGTCAGGAACCCCTCAAGTACGGCGACGTTTTCAATGTTTCAGGGGAGTTGGCATCCCGTCCCGTTGCACCCCGAGACGCTGCCACAGCCCAGGCTGCTGAAAACCTAGTTCTCGGAGAGACTCAGAGGGGCGGCCCGGCTGCAGTCATGCAGTCGGCAGCCACTTACAACGAGCGCGCTCGGCTCGTTGGCCACAGAGATGCCACAAAAGTAGCCAGAGAAGAAGGAGTGTCTGTTACAGAAGGAATTAATCCCGATGGCAACCGCGTTGTTACCGAACACGTTGGTGGACAGGTTGTGGCCAAATATGTGGAACCGCCTTTGCCGATGGGATCGCCAGGAGGAGCGCTGGACCGTGATGCAATTACAATTGGTGAAGCTCTCGAGGCCACTGCTCTGTCAGCAGGCGACAAACCCATTGACAAAAGCGACGCCGCTGCAATACAAGCCGCCGAGATGAAAGCCACTGGGAGAACCGAAATAGATCCCGGGGGTGTTGCGGCCATGGCTCAGTACGCAGCTTCTGTTAACCCGCGCGACGTCAACAAGAAAAAACTAGGCGATGTGCTAGAGGATGCGACTCAAAAGCTGCCAGCGGACAAAGTTGTGACGAGGGAGGATGCGAAGGCGGTGATAGGGGCAGAGATAAGGAACAGTCCGACTATGAGCACCACTCGTGGAGGTGTGGCTGAATCGTTGGCCGCAGCCGCGAGGCTTAACCAGAACACTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMP

Protein Analysis

260

Amino Acids

26.91

Weight (kDa)

5.43

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 585
AccII CGCG 5 cut(s) 219, 309, 577, 579, 752
AclWI GGATC 2 cut(s) 382, 521
AcoI YGGCCR 4 cut(s) 232, 342, 543, 741
AcyI GRCGYC 2 cut(s) 474, 582
AfaI GTAC 2 cut(s) 62, 557
AfeI AGCGCT 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 3 cut(s) 6, 132, 379
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 3 cut(s) 422, 563, 631
AluI AGCT 3 cut(s) 422, 563, 631
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 3 cut(s) 16, 111, 155
AlwI GGATC 2 cut(s) 382, 521
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 3 cut(s) 114, 425, 530
Aor51HI AGCGCT 1 cut(s) 390
AoxI GGCC 6 cut(s) 175, 232, 342, 429, 543, 741
ApeKI GCWGC 8 cut(s) 122, 137, 182, 200, 479, 560, 631, 746
AseI ATTAAT 1 cut(s) 291
AspLEI GCGC 4 cut(s) 219, 221, 391, 579
AspS9I GGNCC 2 cut(s) 176, 394
AsuC2I CCSGG 4 cut(s) 42, 179, 531, 532
AsuHPI GGTGA 2 cut(s) 428, 685
AvaI CYCGRG 3 cut(s) 114, 425, 530
AvaII GGWCC 1 cut(s) 394
BalI TGGCCA 2 cut(s) 234, 344
BauI CACGAG 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 8 cut(s) 109, 124, 169, 212, 466, 572, 618, 758
BccI CCATC 2 cut(s) 293, 364
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 4 cut(s) 416, 450, 461, 495
BciT130I CCWGG 3 cut(s) 8, 134, 381
BcnI CCSGG 4 cut(s) 42, 179, 531, 532
BcoDI GTCTC 3 cut(s) 16, 111, 155
BfaI CTAG 3 cut(s) 149, 599, 611
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 392
Bme1390I CCNGG 7 cut(s) 8, 42, 134, 179, 381, 531, 532
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 3 cut(s) 114, 425, 530
BmgT120I GGNCC 2 cut(s) 176, 394
BmiI GGNNCC 2 cut(s) 51, 357
BmrFI CCNGG 7 cut(s) 8, 42, 134, 179, 381, 531, 532
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 5 cut(s) 104, 232, 391, 607, 652
BmuI ACTGGG 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 700, 732
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 4 cut(s) 42, 179, 531, 532
BsaHI GRCGYC 2 cut(s) 474, 582
BsaJI CCNNGG 6 cut(s) 17, 40, 132, 530, 531, 546
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 34, 514, 775
BseBI CCWGG 3 cut(s) 8, 134, 381
BseDI CCNNGG 6 cut(s) 17, 40, 132, 530, 531, 546
BseGI GGATG 3 cut(s) 95, 622, 667
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 179, 566
BseNI ACTGG 3 cut(s) 34, 514, 775
BsePI GCGCGC 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 8 cut(s) 109, 124, 169, 212, 466, 572, 618, 758
Bsh1236I CGCG 5 cut(s) 219, 309, 577, 579, 752
BshFI GGCC 6 cut(s) 177, 234, 344, 431, 545, 743
BsiHKAI GWGCWC 1 cut(s) 713
BsiHKCI CYCGRG 3 cut(s) 114, 425, 530
BsiSI CCGG 3 cut(s) 42, 179, 531
BslFI GGGAC 2 cut(s) 22, 87
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 3 cut(s) 16, 111, 155
BsmBI CGTCTC 2 cut(s) 16, 111
BsmFI GGGAC 2 cut(s) 22, 87
BsnI GGCC 6 cut(s) 177, 234, 344, 431, 545, 743
BsoBI CYCGRG 3 cut(s) 114, 425, 530
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 2 cut(s) 374, 526
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 6 cut(s) 177, 234, 344, 431, 545, 743
BspCNI CTCAG 2 cut(s) 178, 565
BspFNI CGCG 5 cut(s) 219, 309, 577, 579, 752
BspLI GGNNCC 2 cut(s) 51, 357
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 2 cut(s) 382, 521
BsrI ACTGG 3 cut(s) 34, 514, 775
BssECI CCNNGG 6 cut(s) 17, 40, 132, 530, 531, 546
BssHII GCGCGC 1 cut(s) 217
BssMI GATC 2 cut(s) 374, 526
BssNI GRCGYC 2 cut(s) 474, 582
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 3 cut(s) 8, 134, 381
Bst4CI ACNGT 2 cut(s) 398, 698
BstACI GRCGYC 2 cut(s) 474, 582
BstC8I GCNNGC 3 cut(s) 219, 448, 636
BstDEI CTNAG 2 cut(s) 165, 552
BstDSI CCRYGG 2 cut(s) 17, 546
BstF5I GGATG 3 cut(s) 95, 622, 667
BstFNI CGCG 5 cut(s) 219, 309, 577, 579, 752
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 4 cut(s) 219, 221, 391, 579
BstKTI GATC 2 cut(s) 377, 529
BstMAI GTCTC 3 cut(s) 16, 111, 155
BstMBI GATC 2 cut(s) 374, 526
BstMWI GCNNNNNNNGC 9 cut(s) 128, 137, 223, 428, 443, 488, 548, 557, 749
BstNI CCWGG 3 cut(s) 8, 134, 381
BstSCI CCNGG 7 cut(s) 6, 40, 132, 177, 379, 529, 530
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 5 cut(s) 219, 309, 577, 579, 752
BstV1I GCAGC 8 cut(s) 109, 124, 169, 212, 466, 572, 618, 758
BstX2I RGATCY 1 cut(s) 526
BstXI CCANNNNNNTGG 2 cut(s) 352, 770
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 6 cut(s) 177, 234, 344, 431, 545, 743
BtgI CCRYGG 2 cut(s) 17, 546
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 3 cut(s) 95, 622, 667
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 432, 507, 768
Cac8I GCNNGC 3 cut(s) 219, 448, 636
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 4 cut(s) 219, 221, 391, 579
Cfr13I GGNCC 2 cut(s) 176, 394
Cfr9I CCCGGG 1 cut(s) 530
CseI GACGC 2 cut(s) 128, 482
Csp6I GTAC 2 cut(s) 61, 556
CviAII CATG 2 cut(s) 190, 547
CviQI GTAC 2 cut(s) 61, 556
DdeI CTNAG 2 cut(s) 165, 552
DpnI GATC 2 cut(s) 376, 528
DpnII GATC 2 cut(s) 374, 526
EaeI YGGCCR 4 cut(s) 232, 342, 543, 741
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 394
Eco47III AGCGCT 1 cut(s) 390
Eco88I CYCGRG 3 cut(s) 114, 425, 530
EcoRII CCWGG 3 cut(s) 6, 132, 379
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 2 cut(s) 16, 111
FaeI CATG 2 cut(s) 193, 550
FaiI YATR 4 cut(s) 191, 351, 548, 707
FaqI GGGAC 2 cut(s) 22, 87
FatI CATG 2 cut(s) 189, 546
FauI CCCGC 1 cut(s) 582
FokI GGATG 3 cut(s) 82, 629, 674
FspBI CTAG 3 cut(s) 149, 599, 611
GlaI GCGC 4 cut(s) 218, 220, 390, 578
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 6 cut(s) 177, 234, 344, 431, 545, 743
HapII CCGG 3 cut(s) 42, 179, 531
HgaI GACGC 2 cut(s) 128, 482
HhaI GCGC 4 cut(s) 219, 221, 391, 579
Hin1I GRCGYC 2 cut(s) 474, 582
Hin1II CATG 2 cut(s) 193, 550
Hin6I GCGC 4 cut(s) 217, 219, 389, 577
HinP1I GCGC 4 cut(s) 217, 219, 389, 577
HincII GTYRAC 2 cut(s) 571, 586
HindII GTYRAC 2 cut(s) 571, 586
HinfI GANTC 3 cut(s) 163, 622, 734
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 3 cut(s) 42, 179, 531
HphI GGTGA 2 cut(s) 428, 685
Hpy166II GTNNAC 3 cut(s) 332, 571, 586
Hpy188I TCNGA 3 cut(s) 158, 168, 702
Hpy188III TCNNGA 3 cut(s) 47, 296, 425
Hpy8I GTNNAC 3 cut(s) 332, 571, 586
Hpy99I CGWCG 3 cut(s) 71, 476, 584
HpyAV CCTTC 3 cut(s) 260, 278, 661
HpyCH4III ACNGT 2 cut(s) 398, 698
HpyCH4IV ACGT 3 cut(s) 69, 324, 582
HpyCH4V TGCA 5 cut(s) 110, 185, 193, 404, 482
HpyF10VI GCNNNNNNNGC 9 cut(s) 128, 137, 223, 428, 443, 488, 548, 557, 749
HpyF3I CTNAG 2 cut(s) 165, 552
HpySE526I ACGT 3 cut(s) 69, 324, 582
Hsp92I GRCGYC 2 cut(s) 474, 582
Hsp92II CATG 2 cut(s) 193, 550
HspAI GCGC 4 cut(s) 217, 219, 389, 577
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 374, 526
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 8 cut(s) 109, 124, 169, 212, 466, 572, 618, 758
LweI GCATC 5 cut(s) 104, 232, 391, 607, 652
MaeI CTAG 3 cut(s) 149, 599, 611
MaeII ACGT 3 cut(s) 69, 324, 582
MaeIII GTNAC 3 cut(s) 277, 313, 649
MalI GATC 2 cut(s) 376, 528
MboI GATC 2 cut(s) 374, 526
MboII GAAGA 1 cut(s) 275
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 713
MlsI TGGCCA 2 cut(s) 234, 344
MluCI AATT 3 cut(s) 288, 405, 411
MluNI TGGCCA 2 cut(s) 234, 344
MlyI GAGTC 2 cut(s) 157, 616
MmeI TCCRAC 1 cut(s) 725
MnlI CCTC 9 cut(s) 65, 162, 377, 421, 607, 648, 652, 716, 747
Mox20I TGGCCA 2 cut(s) 234, 344
MscI TGGCCA 2 cut(s) 234, 344
MseI TTAA 3 cut(s) 291, 570, 759
MslI CAYNNNNRTG 2 cut(s) 240, 327
Msp20I TGGCCA 2 cut(s) 234, 344
MspA1I CMGCKG 2 cut(s) 479, 638
MspI CCGG 3 cut(s) 42, 179, 531
MspR9I CCNGG 7 cut(s) 8, 42, 134, 179, 381, 531, 532
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 3 cut(s) 8, 134, 381
MvnI CGCG 5 cut(s) 219, 309, 577, 579, 752
MwoI GCNNNNNNNGC 9 cut(s) 128, 137, 223, 428, 443, 488, 548, 557, 749
NciI CCSGG 4 cut(s) 42, 179, 531, 532
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 374, 526
NlaIII CATG 2 cut(s) 193, 550
NlaIV GGNNCC 2 cut(s) 51, 357
NmeAIII GCCGAG 2 cut(s) 202, 520
NmuCI GTSAC 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 425
PauI GCGCGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 734
PleI GAGTC 2 cut(s) 157, 616
PpsI GAGTC 2 cut(s) 157, 616
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 6, 132, 379
PspGI CCWGG 3 cut(s) 6, 132, 379
PspN4I GGNNCC 2 cut(s) 51, 357
PspPI GGNCC 2 cut(s) 176, 394
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 526
PteI GCGCGC 1 cut(s) 217
RsaI GTAC 2 cut(s) 62, 557
RsaNI GTAC 2 cut(s) 61, 556
RseI CAYNNNNRTG 2 cut(s) 240, 327
SaqAI TTAA 3 cut(s) 291, 570, 759
Sau3AI GATC 2 cut(s) 374, 526
Sau96I GGNCC 2 cut(s) 176, 394
SchI GAGTC 2 cut(s) 157, 616
ScrFI CCNGG 7 cut(s) 8, 42, 134, 179, 381, 531, 532
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 5 cut(s) 104, 232, 391, 607, 652
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 394
SlaI CTCGAG 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 240, 327
SmlI CTYRAG 2 cut(s) 56, 425
SmoI CTYRAG 2 cut(s) 56, 425
Sse9I AATT 3 cut(s) 288, 405, 411
SspMI CTAG 3 cut(s) 149, 599, 611
StyD4I CCNGG 7 cut(s) 6, 40, 132, 177, 379, 529, 530
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 398, 698
TaiI ACGT 3 cut(s) 72, 327, 585
TaqI TCGA 1 cut(s) 426
TasI AATT 3 cut(s) 288, 405, 411
TauI GCSGC 6 cut(s) 177, 479, 494, 545, 746, 752
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 3 cut(s) 291, 570, 759
Tru9I TTAA 3 cut(s) 291, 570, 759
TscAI CASTG 3 cut(s) 439, 514, 775
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 8 cut(s) 122, 137, 182, 200, 479, 560, 631, 746
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 1 cut(s) 515
TspGWI ACGGA 1 cut(s) 34
TspMI CCCGGG 1 cut(s) 530
TspRI CASTG 3 cut(s) 439, 514, 775
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 291
XhoI CTCGAG 1 cut(s) 425
XmaI CCCGGG 1 cut(s) 530
XspI CTAG 3 cut(s) 149, 599, 611
ZraI GACGTC 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.