Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

34164927 .. 34168929

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCGAGATAATACAGTGGATGATCAGGACACAGGGTTTTCTAATAAGGAAGCCACGCTGTTGAAATCACAGAAATTCACCCCTGAATTTGGTTTACTACTGCATAACATAGGGTTGTTGATTTCACAAACCTTATATTTTCCAAACATTGTAAATGTTCCTCTCTTCAAGGGATGCTCAACGGAATTCATCAATCAGATTGTTATTAAACTACACGAGGAATTTTTTGTCCCTGGAGAAGTGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAACCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCACCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.76

Weight (kDa)

5.44

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	326, 478
AcsI	RAATTY	5 cut(s)	74, 86, 185, 221, 273
AfiI	CCNNNNNNNGG	2 cut(s)	89, 430
AgsI	TTSAA	5 cut(s)	64, 169, 344, 377, 413
AjnI	CCWGG	4 cut(s)	232, 253, 304, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw21I	GWGCWC	2 cut(s)	604, 648
Alw44I	GTGCAC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	326, 478
AoxI	GGCC	1 cut(s)	667
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	322, 350
ApoI	RAATTY	5 cut(s)	74, 86, 185, 221, 273
AspLEI	GCGC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	459
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	604, 648
BbvI	GCAGC	2 cut(s)	334, 362
BccI	CCATC	2 cut(s)	303, 524
BciT130I	CCWGG	4 cut(s)	234, 255, 306, 523
BclI	TGATCA	1 cut(s)	22
BfaI	CTAG	1 cut(s)	660
BisI	GCNGC	2 cut(s)	323, 351
BlsI	GCNGC	2 cut(s)	324, 352
Bme1390I	CCNGG	4 cut(s)	234, 255, 306, 523
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	4 cut(s)	234, 255, 306, 523
BmsI	GCATC	2 cut(s)	164, 337
BpmI	CTGGAG	2 cut(s)	255, 288
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	321, 588
BsaBI	GATNNNNATC	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	232, 522, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 430
Bse3DI	GCAATG	2 cut(s)	551, 593
Bse8I	GATNNNNATC	1 cut(s)	715
BseBI	CCWGG	4 cut(s)	234, 255, 306, 523
BseDI	CCNNGG	3 cut(s)	232, 522, 670
BseGI	GGATG	3 cut(s)	25, 179, 314
BseJI	GATNNNNATC	1 cut(s)	715
BseLI	CCNNNNNNNGG	2 cut(s)	89, 430
BseMI	GCAATG	2 cut(s)	551, 593
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	334, 362
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	669
BsiHKAI	GWGCWC	2 cut(s)	604, 648
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	89, 430
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	459, 604, 648
Bsp143I	GATC	4 cut(s)	22, 268, 331, 470
BspANI	GGCC	1 cut(s)	669
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	326, 478
BspQI	GCTCTTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	551, 593
BssECI	CCNNGG	3 cut(s)	232, 522, 670
BssMI	GATC	4 cut(s)	22, 268, 331, 470
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	670
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	4 cut(s)	234, 255, 306, 523
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	170, 362
BstAPI	GCANNNNNTGC	3 cut(s)	319, 548, 553
BstC8I	GCNNGC	3 cut(s)	300, 549, 600
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	3 cut(s)	25, 179, 314
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	4 cut(s)	25, 271, 334, 473
BstMBI	GATC	4 cut(s)	22, 268, 331, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 548, 553
BstNI	CCWGG	4 cut(s)	234, 255, 306, 523
BstNSI	RCATGY	2 cut(s)	302, 551
BstSCI	CCNGG	4 cut(s)	232, 253, 304, 521
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	334, 362
BsuRI	GGCC	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	25, 179, 314
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	300, 549, 600
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	491
CseI	GACGC	1 cut(s)	515
CviAII	CATG	6 cut(s)	290, 299, 329, 359, 425, 548
CviJI	RGCY	8 cut(s)	53, 325, 353, 372, 409, 440, 457, 669
CviKI_1	RGCY	8 cut(s)	53, 325, 353, 372, 409, 440, 457, 669
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	4 cut(s)	24, 270, 333, 472
DpnII	GATC	4 cut(s)	22, 268, 331, 470
DraI	TTTAAA	2 cut(s)	630, 715
Eam1104I	CTCTTC	2 cut(s)	170, 362
EarI	CTCTTC	2 cut(s)	170, 362
Eco130I	CCWWGG	1 cut(s)	670
Eco147I	AGGCCT	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	4 cut(s)	232, 253, 304, 521
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	6 cut(s)	293, 302, 332, 362, 428, 551
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	289, 298, 328, 358, 424, 547
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	323, 351
FokI	GGATG	3 cut(s)	32, 186, 321
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	323, 351
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	2 cut(s)	323, 351
GsuI	CTGGAG	2 cut(s)	255, 288
HaeIII	GGCC	1 cut(s)	669
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	6 cut(s)	293, 302, 332, 362, 428, 551
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	2 cut(s)	446, 691
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	95, 646
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	4 cut(s)	26, 329, 344, 413
Hpy8I	GTNNAC	2 cut(s)	95, 646
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	103, 322, 350, 551, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 548, 553
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	6 cut(s)	293, 302, 332, 362, 428, 551
HspAI	GCGC	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	22, 268, 331, 470
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	2 cut(s)	334, 362
LweI	GCATC	2 cut(s)	164, 337
MaeI	CTAG	1 cut(s)	660
MalI	GATC	4 cut(s)	24, 270, 333, 472
MboI	GATC	4 cut(s)	22, 268, 331, 470
MboII	GAAGA	4 cut(s)	157, 379, 646, 649
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	459, 604, 648
MluCI	AATT	7 cut(s)	74, 86, 185, 221, 273, 388, 654
MnlI	CCTC	7 cut(s)	171, 211, 336, 345, 430, 659, 705
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	3 cut(s)	207, 629, 714
MspR9I	CCNGG	4 cut(s)	234, 255, 306, 523
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	4 cut(s)	234, 255, 306, 523
MwoI	GCNNNNNNNGC	3 cut(s)	319, 548, 553
NdeII	GATC	4 cut(s)	22, 268, 331, 470
NlaIII	CATG	6 cut(s)	293, 302, 332, 362, 428, 551
NlaIV	GGNNCC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	2 cut(s)	302, 551
PaeI	GCATGC	2 cut(s)	302, 551
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	669
PciSI	GCTCTTC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	446, 691
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	324, 352
Psp6I	CCWGG	4 cut(s)	232, 253, 304, 521
PspGI	CCWGG	4 cut(s)	232, 253, 304, 521
PspN4I	GGNNCC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	207, 629, 714
SatI	GCNGC	2 cut(s)	323, 351
Sau3AI	GATC	4 cut(s)	22, 268, 331, 470
ScrFI	CCNGG	4 cut(s)	234, 255, 306, 523
SduI	GDGCHC	3 cut(s)	459, 604, 648
SetI	ASST	6 cut(s)	134, 256, 411, 622, 628, 651
SfaNI	GCATC	2 cut(s)	164, 337
SmiI	ATTTAAAT	1 cut(s)	715
SmlI	CTYRAG	2 cut(s)	336, 603
SmoI	CTYRAG	2 cut(s)	336, 603
SphI	GCATGC	2 cut(s)	302, 551
Sse9I	AATT	7 cut(s)	74, 86, 185, 221, 273, 388, 654
SseBI	AGGCCT	1 cut(s)	669
SspMI	CTAG	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	669
StyD4I	CCNGG	4 cut(s)	232, 253, 304, 521
StyI	CCWWGG	1 cut(s)	670
SwaI	ATTTAAAT	1 cut(s)	715
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	7 cut(s)	74, 86, 185, 221, 273, 388, 654
TfiI	GAWTC	2 cut(s)	446, 691
Tru1I	TTAA	3 cut(s)	207, 629, 714
Tru9I	TTAA	3 cut(s)	207, 629, 714
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	322, 350
TspDTI	ATGAA	3 cut(s)	178, 381, 438
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	21
VneI	GTGCAC	1 cut(s)	644
XapI	RAATTY	5 cut(s)	74, 86, 185, 221, 273
XceI	RCATGY	2 cut(s)	302, 551
XspI	CTAG	1 cut(s)	660
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.