Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

40218025 .. 40219280

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGTCAAGAACAGCTGAGGAGGCCTCAGGAGGGGCAAGAACCCGTCACGTACGGCGACATTTTCAATGTCTACGGCGACCTCGCATCCAAGACGGTGGCGCCACAAGATGCTGCGATGATGCAGACCGCTGAAACCATGGTGTTGGGGCAGACCCAGAAGGGCGGTCCAGCCGCTGTCATGCAGTCAGCCGCCACCCGAAACGAGAGAGCTGGCCTCGTCCGCCACGATGAGGCTACTGATGTAGCTGGACATGAAGGTGTCACTGTTACAGAGACTGATATCCCTGGAAGGCGAATAATCACTGAATCGGTTGGTGGACAGGTTATTGGCCAGTATGTGGAGCCAGCACCGGTTACACAAGTAGCTGCGGGAGGCTTCATGCAGCAGAATGCAATAACTATAGGCGAGGCACTGGAGGCCTCGGCCCAAACAGCTGGGGATAGGCCAGTGGATCAGAGCGATGCCGCGGCAATTCAGGCTGCAGAGGTGAGAGCAACAGGCAGCAATGTGATAATTCCCGGGGGCCTGGCCGCCACGGCTCAATCTGCCGCAGCTCACAATGCGGGGACTGACAGGGAGCAAGACAAGATTAAGGTTTCTGATGTGCTCTCGGGTGCGACCGCCAAGTTACCCGCGGACAAGGCGGCAACTAGGCAGGATGCCGAAGGAGTGGTGAGTGCCGAGTTGAGGAACAACCCGGACATGACCACACGTCCAGGTGGAGTTGCGGCTTCTGTTACTGCAGCTGCCAGGCTGAACGAAAATATGAATGTGAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

261

Amino Acids

26.87

Weight (kDa)

4.68

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 71	2.1e-19	Seed maturation protein
SMP	PF04927	133 - 189	2.9e-22	Seed maturation protein
SMP	PF04927	198 - 256	1.8e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	2 cut(s)	470, 638
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	331, 531
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
AflIII	ACRYGT	2 cut(s)	713, 780
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	714
AjiI	CACGTC	1 cut(s)	716
AjnI	CCWGG	4 cut(s)	286, 528, 718, 752
AluBI	AGCT	7 cut(s)	16, 212, 248, 368, 437, 557, 749
AluI	AGCT	7 cut(s)	16, 212, 248, 368, 437, 557, 749
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	2 cut(s)	176, 278
Ama87I	CYCGRG	2 cut(s)	521, 613
AoxI	GGCC	8 cut(s)	23, 214, 331, 420, 426, 446, 526, 531
ApeKI	GCWGC	8 cut(s)	113, 368, 385, 482, 504, 554, 746, 749
AsiGI	ACCGGT	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	167, 427, 526
AsuC2I	CCSGG	3 cut(s)	522, 523, 701
AsuHPI	GGTGA	2 cut(s)	502, 688
AvaI	CYCGRG	2 cut(s)	521, 613
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	17
BbvI	GCAGC	8 cut(s)	100, 355, 397, 469, 516, 566, 736, 758
BceAI	ACGGC	3 cut(s)	70, 91, 555
BciT130I	CCWGG	4 cut(s)	288, 530, 720, 754
BcnI	CCSGG	3 cut(s)	522, 523, 701
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	3 cut(s)	402, 483, 744
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	539
Bme1390I	CCNGG	7 cut(s)	288, 522, 523, 530, 701, 720, 754
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmeT110I	CYCGRG	2 cut(s)	521, 613
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	3 cut(s)	167, 427, 526
BmiI	GGNNCC	3 cut(s)	102, 345, 527
BmrFI	CCNGG	7 cut(s)	288, 522, 523, 530, 701, 720, 754
BmsI	GCATC	5 cut(s)	95, 100, 111, 454, 652
BplI	GAGNNNNNCTC	4 cut(s)	10, 42, 201, 233
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	3 cut(s)	522, 523, 701
BsaAI	YACGTR	2 cut(s)	51, 783
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	8 cut(s)	138, 286, 423, 468, 521, 522, 537, 636
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	334, 420, 449
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	4 cut(s)	288, 530, 720, 754
BseDI	CCNNGG	8 cut(s)	138, 286, 423, 468, 521, 522, 537, 636
BseGI	GGATG	2 cut(s)	86, 667
BseLI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	8, 41
BseNI	ACTGG	3 cut(s)	334, 420, 449
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	8 cut(s)	100, 355, 397, 469, 516, 566, 736, 758
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	2 cut(s)	470, 638
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	8 cut(s)	25, 216, 333, 422, 428, 448, 528, 533
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	521, 613
BsiSI	CCGG	3 cut(s)	353, 522, 701
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	8 cut(s)	25, 216, 333, 422, 428, 448, 528, 533
BsoBI	CYCGRG	2 cut(s)	521, 613
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	8 cut(s)	25, 216, 333, 422, 428, 448, 528, 533
BspCNI	CTCAG	2 cut(s)	9, 40
BspFNI	CGCG	2 cut(s)	470, 638
BspLI	GGNNCC	3 cut(s)	102, 345, 527
BspMAI	CTGCAG	2 cut(s)	487, 748
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	334, 420, 449
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	8 cut(s)	138, 286, 423, 468, 521, 522, 537, 636
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	4 cut(s)	288, 530, 720, 754
Bst4CI	ACNGT	2 cut(s)	97, 268
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	2 cut(s)	51, 783
BstC8I	GCNNGC	2 cut(s)	214, 348
BstDEI	CTNAG	2 cut(s)	17, 27
BstDSI	CCRYGG	4 cut(s)	138, 468, 537, 636
BstF5I	GGATG	2 cut(s)	86, 667
BstFNI	CGCG	2 cut(s)	470, 638
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
BstNI	CCWGG	4 cut(s)	288, 530, 720, 754
BstSCI	CCNGG	7 cut(s)	286, 520, 521, 528, 699, 718, 752
BstSFI	CTRYAG	3 cut(s)	402, 483, 744
BstUI	CGCG	2 cut(s)	470, 638
BstV1I	GCAGC	8 cut(s)	100, 355, 397, 469, 516, 566, 736, 758
BstXI	CCANNNNNNTGG	3 cut(s)	97, 145, 437
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	8 cut(s)	25, 216, 333, 422, 428, 448, 528, 533
BtgI	CCRYGG	4 cut(s)	138, 468, 537, 636
BtgZI	GCGATG	2 cut(s)	131, 477
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	2 cut(s)	86, 667
BtsIMutI	CAGTG	4 cut(s)	264, 303, 413, 456
Cac8I	GCNNGC	2 cut(s)	214, 348
CaiI	CAGNNNCTG	2 cut(s)	176, 278
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	167, 427, 526
Cfr42I	CCGCGG	2 cut(s)	471, 639
Cfr9I	CCCGGG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	52
CspAI	ACCGGT	1 cut(s)	352
CviAII	CATG	5 cut(s)	139, 181, 254, 382, 706
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	17, 27
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	714
EaeI	YGGCCR	2 cut(s)	331, 531
Eam1105I	GACNNNNNGTC	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	2 cut(s)	25, 422
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	167
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	521, 613
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	4 cut(s)	286, 528, 718, 752
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	142, 184, 257, 385, 709
FaiI	YATR	8 cut(s)	140, 182, 255, 339, 383, 404, 707, 770
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	138, 180, 253, 381, 705
FauI	CCCGC	3 cut(s)	364, 559, 643
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	2 cut(s)	73, 674
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	8 cut(s)	25, 216, 333, 422, 428, 448, 528, 533
HapII	CCGG	3 cut(s)	353, 522, 701
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	142, 184, 257, 385, 709
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	4, 308
HpaII	CCGG	3 cut(s)	353, 522, 701
HphI	GGTGA	2 cut(s)	502, 688
Hpy166II	GTNNAC	3 cut(s)	73, 320, 778
Hpy188I	TCNGA	2 cut(s)	459, 604
Hpy188III	TCNNGA	2 cut(s)	8, 29
Hpy8I	GTNNAC	3 cut(s)	73, 320, 778
HpyAV	CCTTC	4 cut(s)	154, 251, 285, 662
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyCH4IV	ACGT	3 cut(s)	50, 715, 782
HpyCH4V	TGCA	6 cut(s)	124, 184, 385, 395, 485, 746
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
HpyF3I	CTNAG	2 cut(s)	17, 27
HpySE526I	ACGT	3 cut(s)	50, 715, 782
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	142, 184, 257, 385, 709
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
KspI	CCGCGG	2 cut(s)	471, 639
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	343, 580
Lsp1109I	GCAGC	8 cut(s)	100, 355, 397, 469, 516, 566, 736, 758
LweI	GCATC	5 cut(s)	95, 100, 111, 454, 652
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	3 cut(s)	50, 715, 782
MaeIII	GTNAC	6 cut(s)	46, 262, 268, 355, 630, 739
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	612
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	474, 516
MluNI	TGGCCA	1 cut(s)	333
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	7 cut(s)	16, 131, 176, 437, 470, 638, 749
MspI	CCGG	3 cut(s)	353, 522, 701
MspR9I	CCNGG	7 cut(s)	288, 522, 523, 530, 701, 720, 754
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	4 cut(s)	288, 530, 720, 754
MvnI	CGCG	2 cut(s)	470, 638
MwoI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
NarI	GGCGCC	1 cut(s)	101
NciI	CCSGG	3 cut(s)	522, 523, 701
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	5 cut(s)	142, 184, 257, 385, 709
NlaIV	GGNNCC	3 cut(s)	102, 345, 527
NmeAIII	GCCGAG	2 cut(s)	404, 709
NmuCI	GTSAC	2 cut(s)	46, 262
PceI	AGGCCT	2 cut(s)	25, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	308
Pfl23II	CGTACG	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	352
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	51, 783
Psp6I	CCWGG	4 cut(s)	286, 528, 718, 752
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	4 cut(s)	286, 528, 718, 752
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	102, 345, 527
PspPI	GGNCC	3 cut(s)	167, 427, 526
PstI	CTGCAG	2 cut(s)	487, 748
PstNI	CAGNNNCTG	2 cut(s)	176, 278
PvuII	CAGCTG	3 cut(s)	16, 437, 749
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	258
SacII	CCGCGG	2 cut(s)	471, 639
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	167, 427, 526
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	7 cut(s)	288, 522, 523, 530, 701, 720, 754
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	5 cut(s)	95, 100, 111, 454, 652
SfcI	CTRYAG	3 cut(s)	402, 483, 744
SfoI	GGCGCC	1 cut(s)	102
Sfr303I	CCGCGG	2 cut(s)	471, 639
SgrBI	CCGCGG	2 cut(s)	471, 639
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	474, 516
SseBI	AGGCCT	2 cut(s)	25, 422
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	2 cut(s)	25, 422
StyD4I	CCNGG	7 cut(s)	286, 520, 521, 528, 699, 718, 752
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	97, 268
TaiI	ACGT	3 cut(s)	53, 718, 785
TasI	AATT	2 cut(s)	474, 516
TauI	GCSGC	8 cut(s)	176, 194, 470, 473, 536, 554, 650, 734
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	4 cut(s)	271, 310, 420, 456
TseFI	GTSAC	2 cut(s)	46, 262
TseI	GCWGC	8 cut(s)	113, 368, 385, 482, 504, 554, 746, 749
Tsp45I	GTSAC	2 cut(s)	46, 262
TspDTI	ATGAA	3 cut(s)	270, 370, 785
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	4 cut(s)	271, 310, 420, 456
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	167
XmaI	CCCGGG	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.