RchiOBHm_Chr6g0290671

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002798
Physical Location & Seq
Forward (+)
53694154 .. 53694591
438 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26079

Sequence Viewer

Length: 438 bp
ATGAAGAAGGTCCATCCCTCCCTAAGCAAGCGGAGCACCTCGTACAACGTCGTATCATCTTCGGCGCCGAAGAAGCTCCGGAGACTCCCTCACGTGTTCGCCAAGGTTCTCGAGCTTCCTTTCCAGTCCAGCGCCGACGTTTCCGTCCAAGAAACCTCCGACTCTTTCCGGTTCTCCGTGCCCGTGACAGCCGGTCATCAAGTATACCACGACGAGGTTGTCAGGGCCAACGCGATAGAGATCTATCCGGGGGTGACCAAGATTGTGATACAAAAGATGAATGGTGGTGACTTTTCGCCGGAGGTGAACGACGTCGGGGGTCATTTCGATAAGTGGAGGTTTCGTCTCCCGCCTTCGATGAGACCGGAGTTGGCTAATGCGACGTACGCTGGTCAAGAACTGGTTGTCACTATTCCAAAGAACCATGCATGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

9.48

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 218
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 2 cut(s) 31, 350
AcvI CACGTG 1 cut(s) 94
AcyI GRCGYC 2 cut(s) 65, 312
AfaI GTAC 2 cut(s) 44, 386
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 93
AhdI GACNNNNNGTC 1 cut(s) 192
AluBI AGCT 2 cut(s) 76, 115
AluI AGCT 2 cut(s) 76, 115
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 76, 350, 355
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 225
AspLEI GCGC 2 cut(s) 67, 134
AspS9I GGNCC 2 cut(s) 10, 225
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 3 cut(s) 265, 299, 316
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 64
BbrPI CACGTG 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 76, 350, 355
BfoI RGCGCY 2 cut(s) 68, 135
BglII AGATCT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 10, 225
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 65, 312
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 102, 248
BsaWI WCCGGW 3 cut(s) 78, 168, 364
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 124, 405
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 102, 248
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 124, 405
BseSI GKGCMC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
BsiWI CGTACG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 76, 350, 355
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 38, 183
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 31, 350
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 124, 405
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 102, 248
BssMI GATC 1 cut(s) 240
BssNAI GTATAC 1 cut(s) 205
BssNI GRCGYC 2 cut(s) 65, 312
BssT1I CCWWGG 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 205
BstACI GRCGYC 2 cut(s) 65, 312
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 2 cut(s) 68, 135
BstHHI GCGC 2 cut(s) 67, 134
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 3 cut(s) 76, 350, 355
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 33, 73, 386
BstNSI RCATGY 1 cut(s) 432
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BstZ17I GTATAC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 29
CciI TCATGA 1 cut(s) 434
CfoI GCGC 2 cut(s) 67, 134
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 10, 225
Csp6I GTAC 2 cut(s) 43, 385
CviAII CATG 3 cut(s) 425, 429, 435
CviJI RGCY 5 cut(s) 76, 115, 191, 227, 374
CviKI_1 RGCY 5 cut(s) 76, 115, 191, 227, 374
CviQI GTAC 2 cut(s) 43, 385
DdeI CTNAG 1 cut(s) 23
DinI GGCGCC 1 cut(s) 66
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DrdI GACNNNNNNGTC 2 cut(s) 143, 218
DriI GACNNNNNGTC 1 cut(s) 192
DseDI GACNNNNNNGTC 2 cut(s) 143, 218
Eam1105I GACNNNNNGTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 428, 432, 438
FaiI YATR 4 cut(s) 205, 426, 430, 436
FatI CATG 3 cut(s) 424, 428, 434
FauI CCCGC 1 cut(s) 357
FblI GTMKAC 1 cut(s) 204
GlaI GCGC 2 cut(s) 66, 133
HaeII RGCGCY 2 cut(s) 68, 135
HaeIII GGCC 1 cut(s) 227
HapII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HhaI GCGC 2 cut(s) 67, 134
Hin1I GRCGYC 2 cut(s) 65, 312
Hin1II CATG 3 cut(s) 428, 432, 438
Hin6I GCGC 2 cut(s) 65, 132
HinP1I GCGC 2 cut(s) 65, 132
HinfI GANTC 2 cut(s) 84, 161
HpaII CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
HphI GGTGA 3 cut(s) 265, 299, 316
Hpy166II GTNNAC 2 cut(s) 205, 307
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 4 cut(s) 79, 110, 395, 435
Hpy8I GTNNAC 2 cut(s) 205, 307
Hpy99I CGWCG 6 cut(s) 53, 140, 215, 314, 317, 385
HpyAV CCTTC 1 cut(s) 363
HpyCH4IV ACGT 5 cut(s) 48, 93, 138, 312, 383
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 73, 386
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 5 cut(s) 48, 93, 138, 312, 383
Hsp92I GRCGYC 2 cut(s) 65, 312
Hsp92II CATG 3 cut(s) 428, 432, 438
HspAI GCGC 2 cut(s) 65, 132
KasI GGCGCC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 78
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 33, 81
MaeII ACGT 5 cut(s) 48, 93, 138, 312, 383
MaeIII GTNAC 4 cut(s) 184, 253, 287, 406
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 3 cut(s) 16, 51, 82
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 38, 183
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 2 cut(s) 78, 155
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 7 cut(s) 28, 49, 99, 166, 208, 295, 330
Mph1103I ATGCAT 1 cut(s) 430
MroI TCCGGA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 433
MspI CCGG 6 cut(s) 79, 169, 192, 248, 299, 365
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 33, 73, 386
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 1 cut(s) 249
NdeII GATC 1 cut(s) 240
NlaIII CATG 3 cut(s) 428, 432, 438
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 4 cut(s) 184, 253, 287, 406
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 432
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 434
Pfl23II CGTACG 1 cut(s) 384
PleI GAGTC 2 cut(s) 78, 155
PluTI GGCGCC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
PpsI GAGTC 2 cut(s) 78, 155
Ppu21I YACGTR 1 cut(s) 94
PspCI CACGTG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 253
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 10, 225
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 2 cut(s) 44, 386
RsaNI GTAC 2 cut(s) 43, 385
RseI CAYNNNNRTG 1 cut(s) 433
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 10, 225
SchI GAGTC 2 cut(s) 78, 155
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 38, 183
SfoI GGCGCC 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 2 cut(s) 31, 350
SspDI GGCGCC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 5 cut(s) 51, 96, 141, 315, 386
TaqI TCGA 3 cut(s) 111, 327, 356
TseFI GTSAC 4 cut(s) 184, 253, 287, 406
Tsp45I GTSAC 4 cut(s) 184, 253, 287, 406
TspDTI ATGAA 3 cut(s) 17, 293, 423
TspGWI ACGGA 2 cut(s) 133, 166
VpaK11BI GGWCC 1 cut(s) 10
XceI RCATGY 1 cut(s) 432
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 204
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.