Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

19067931 .. 19068905

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGAAGGTCCATTCCTCCCTAAGCAATCGGAGCATCTCATACAACGTCGCCGTATCACCTTCGACGCCGAAGAAGCTCCGGAGACTCCCTCACGTGTTCGCCAAGGTTCTCGAGCTTCCTTTCCACTCCTGCGCCGACGTTTCCATCCAAGAAACCTCCGACTCTTTCCGTTTCTCGGTGACCCTGCCCGCCGGTCATCAAGCAGTAAACCACGACGAGGTTGTCCGGGCCAACGCGATAGAGATCTATCCGGGGATGACTAAGGTTGTGATACAAAAGATAAACGGTGGTGACTTTTCACCGGCGGTGAACTACGTCGGGGGTCATTTTGATAATTATGATAAGTGGAGGTATCGGCTCCCGGCTTCGACGAGACCGGAGTTGGCAACTGCGACGTACGCTGGTCGAGAACTGGTTGTGACTGTTCCAAAGAACCATGTTCATGATCATCATGGTGATCGTAGCACGCTAGAGGAACAAGAACAAGATGAAAATGTTAGGGTTATTGTTATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.41

Weight (kDa)

7.95

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccII	CGCG	1 cut(s)	239
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	2 cut(s)	192, 308
AcvI	CACGTG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	178, 220
AflIII	ACRYGT	1 cut(s)	96
AluBI	AGCT	2 cut(s)	79, 118
AluI	AGCT	2 cut(s)	79, 118
Alw26I	GTCTC	2 cut(s)	79, 370
Ama87I	CYCGRG	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	10, 231
AsuC2I	CCSGG	3 cut(s)	230, 255, 365
AsuHPI	GGTGA	6 cut(s)	51, 193, 294, 305, 322, 470
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	97
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	3 cut(s)	230, 255, 365
BcoDI	GTCTC	2 cut(s)	79, 370
BfaI	CTAG	1 cut(s)	473
BglII	AGATCT	1 cut(s)	246
Bme1390I	CCNGG	3 cut(s)	230, 255, 365
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	10, 231
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	3 cut(s)	230, 255, 365
BmsI	GCATC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	3 cut(s)	230, 255, 365
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	105, 254
BsaWI	WCCGGW	2 cut(s)	81, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 220
Bse118I	RCCGGY	2 cut(s)	194, 304
Bse1I	ACTGG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	105, 254
BseGI	GGATG	2 cut(s)	147, 264
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	178, 220
BseNI	ACTGG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	7 cut(s)	82, 195, 229, 254, 305, 365, 380
BsiWI	CGTACG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	178, 220
BsmAI	GTCTC	2 cut(s)	79, 370
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	113
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	246, 448, 460
BspACI	CCGC	2 cut(s)	192, 308
BspANI	GGCC	1 cut(s)	233
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	370
BsrFI	RCCGGY	2 cut(s)	194, 304
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	2 cut(s)	194, 304
BssECI	CCNNGG	2 cut(s)	105, 254
BssMI	GATC	3 cut(s)	246, 448, 460
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	290, 427, 519
BstACI	GRCGYC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	192, 470
BstDEI	CTNAG	2 cut(s)	23, 264
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	147, 264
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	249, 451, 463
BstMAI	GTCTC	2 cut(s)	79, 370
BstMBI	GATC	3 cut(s)	246, 448, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 76, 401
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	228, 253, 363
BstUI	CGCG	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	147, 264
Cac8I	GCNNGC	2 cut(s)	192, 470
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	2 cut(s)	194, 304
Cfr13I	GGNCC	2 cut(s)	10, 231
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	3 cut(s)	440, 446, 455
CviJI	RGCY	5 cut(s)	79, 118, 233, 361, 368
CviKI_1	RGCY	5 cut(s)	79, 118, 233, 361, 368
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	23, 264
DpnI	GATC	3 cut(s)	248, 450, 462
DpnII	GATC	3 cut(s)	246, 448, 460
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	443, 449, 458
FaiI	YATR	6 cut(s)	43, 342, 441, 447, 456, 515
FatI	CATG	3 cut(s)	439, 445, 454
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	448
FokI	GGATG	2 cut(s)	134, 271
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	7 cut(s)	82, 195, 229, 254, 305, 365, 380
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	443, 449, 458
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	87, 164
HpaII	CCGG	7 cut(s)	82, 195, 229, 254, 305, 365, 380
HphI	GGTGA	6 cut(s)	51, 193, 294, 305, 322, 470
Hpy166II	GTNNAC	2 cut(s)	211, 313
Hpy188I	TCNGA	2 cut(s)	33, 163
Hpy188III	TCNNGA	4 cut(s)	82, 113, 410, 446
Hpy8I	GTNNAC	2 cut(s)	211, 313
Hpy99I	CGWCG	7 cut(s)	53, 70, 143, 221, 323, 376, 400
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	290, 427, 519
HpyCH4IV	ACGT	5 cut(s)	48, 96, 141, 318, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 76, 401
HpyF3I	CTNAG	2 cut(s)	23, 264
HpySE526I	ACGT	5 cut(s)	48, 96, 141, 318, 398
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	443, 449, 458
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	246, 448, 460
LmnI	GCTCC	3 cut(s)	33, 84, 366
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	5 cut(s)	48, 96, 141, 318, 398
MaeIII	GTNAC	3 cut(s)	181, 293, 421
MalI	GATC	3 cut(s)	248, 450, 462
MboI	GATC	3 cut(s)	246, 448, 460
MboII	GAAGA	2 cut(s)	16, 85
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	2 cut(s)	81, 158
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	28, 102, 169, 214, 345, 469
MroI	TCCGGA	1 cut(s)	81
MslI	CAYNNNNRTG	2 cut(s)	444, 456
MspI	CCGG	7 cut(s)	82, 195, 229, 254, 305, 365, 380
MspR9I	CCNGG	3 cut(s)	230, 255, 365
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	33, 76, 401
NciI	CCSGG	3 cut(s)	230, 255, 365
NdeII	GATC	3 cut(s)	246, 448, 460
NlaIII	CATG	3 cut(s)	443, 449, 458
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	3 cut(s)	181, 293, 421
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	445
Pfl23II	CGTACG	1 cut(s)	399
PleI	GAGTC	2 cut(s)	81, 158
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	81, 158
Ppu21I	YACGTR	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	181
PspLI	CGTACG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	2 cut(s)	10, 231
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	444, 456
Sau3AI	GATC	3 cut(s)	246, 448, 460
Sau96I	GGNCC	2 cut(s)	10, 231
SchI	GAGTC	2 cut(s)	81, 158
ScrFI	CCNGG	3 cut(s)	230, 255, 365
SfaNI	GCATC	1 cut(s)	45
Sfr274I	CTCGAG	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	444, 456
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	192, 308
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	228, 253, 363
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	290, 427, 519
TaiI	ACGT	5 cut(s)	51, 99, 144, 321, 401
TaqI	TCGA	4 cut(s)	65, 114, 371, 409
TasI	AATT	1 cut(s)	337
TseFI	GTSAC	3 cut(s)	181, 293, 421
Tsp45I	GTSAC	3 cut(s)	181, 293, 421
TspDTI	ATGAA	3 cut(s)	17, 434, 507
TspGWI	ACGGA	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	113
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.