Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

16795928 .. 16797455

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1194000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAACCAGGGACAGCCACGGAGGCCTCGGGAGGACGAGGCGCGGCCGATCAAGTACGGAGACGTTTTCTCCGTCTCAGGGCAACTCGCTGACAAACCCATTGCACCGCAAGATGCTAACATGATGCAGACCGCTGAGACCATGATTTTCGGGCAGACCCAGAAGGGCGGTCCGGCCTCTGTCATGCAGTCGGCCGCCAGCCGGAACGAAAGAGCCGGTCTCGTCCGCCATGACCAGGCTACTGATGTTGCTGGAAGTGAAGGTGTCACTGTTACCGAGACTGATGTCCCCGGCAGCCGCATCATCACTGAATCAGTTGGTGGACAGGTGGTTGGGCAGTATGTGCAGCCTACCCCGGTGGCGCAGGCAACTGCGGCGGGGTTCATGCAGCAGAACTCAATCACCATAGGTGAAGCACTGGAAGCCTCGGCCCAAACAGCGGGTGACAGGCCAATTGATCAAAGCGATGCTGCGGCCATTCAGGCAGCTGAGGTGAGAGCGACAGGCAGCAGTGTGATAAGCCAGGGTGGGCTGGCCGCCATGGCTCAATCCGCTGCAGCGTACAATGCTGGGACTGAGAGGGAGCAGGACAAGATCAAGCTCACTGATGTGTTGTCGGGTGCAACTGCGAAGCTGCCCGTGGACAAAGCCGCGACGAGGCAGGATGCTGAAGGAGTTGTGAGCGCTGAGCTGCGAAACAATCCGGACTTGGGAACCCGTCCCGGTGGAGTGGCAGCGTCGGTCATAGCGGCTGCTAGGCTGAATGAGAGTATAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

261

Amino Acids

26.8

Weight (kDa)

4.88

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	17 - 72	5.1e-19	Seed maturation protein
SMP	PF04927	134 - 190	1.1e-20	Seed maturation protein
SMP	PF04927	199 - 257	1.9e-20	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	43, 653
AccIII	TCCGGA	1 cut(s)	703
AcoI	YGGCCR	4 cut(s)	44, 192, 474, 534
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	56, 563
AfeI	AGCGCT	1 cut(s)	685
AfiI	CCNNNNNNNGG	6 cut(s)	78, 201, 235, 439, 657, 710
AjnI	CCWGG	3 cut(s)	6, 234, 522
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	4 cut(s)	488, 601, 634, 691
AluI	AGCT	4 cut(s)	488, 601, 634, 691
Alw26I	GTCTC	5 cut(s)	54, 79, 131, 224, 272
Ama87I	CYCGRG	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	703
Aor51HI	AGCGCT	1 cut(s)	685
AoxI	GGCC	8 cut(s)	23, 44, 174, 192, 429, 449, 474, 534
AspLEI	GCGC	3 cut(s)	43, 364, 686
AspS9I	GGNCC	2 cut(s)	170, 430
AsuC2I	CCSGG	3 cut(s)	291, 356, 723
AsuHPI	GGTGA	4 cut(s)	394, 422, 455, 505
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	489
BciT130I	CCWGG	3 cut(s)	8, 236, 524
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	3 cut(s)	291, 356, 723
BcoDI	GTCTC	5 cut(s)	54, 79, 131, 224, 272
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	687
BglI	GCCNNNNNGGC	3 cut(s)	22, 482, 542
BlpI	GCTNAGC	1 cut(s)	687
Bme1390I	CCNGG	6 cut(s)	8, 236, 291, 356, 524, 723
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	170, 430
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	6 cut(s)	8, 236, 291, 356, 524, 723
BmsI	GCATC	5 cut(s)	103, 114, 309, 457, 655
BoxI	GACNNNNGTC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuMI	CCSGG	3 cut(s)	291, 356, 723
BsaI	GGTCTC	2 cut(s)	131, 224
BsaJI	CCNNGG	9 cut(s)	7, 17, 26, 289, 354, 426, 523, 540, 639
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 201, 235, 439, 657, 710
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	3 cut(s)	8, 236, 524
BseDI	CCNNGG	9 cut(s)	7, 17, 26, 289, 354, 426, 523, 540, 639
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	6 cut(s)	78, 201, 235, 439, 657, 710
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	5 cut(s)	90, 126, 480, 567, 678
BseNI	ACTGG	1 cut(s)	423
BseX3I	CGGCCG	2 cut(s)	44, 192
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	43, 653
Bsh1285I	CGRYCG	2 cut(s)	47, 195
BshFI	GGCC	8 cut(s)	25, 46, 176, 194, 431, 451, 476, 536
BsiEI	CGRYCG	2 cut(s)	47, 195
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	7 cut(s)	173, 202, 216, 291, 356, 704, 723
BslFI	GGGAC	4 cut(s)	24, 272, 586, 705
BslI	CCNNNNNNNGG	6 cut(s)	78, 201, 235, 439, 657, 710
BsmAI	GTCTC	5 cut(s)	54, 79, 131, 224, 272
BsmBI	CGTCTC	2 cut(s)	54, 79
BsmFI	GGGAC	4 cut(s)	24, 272, 586, 705
BsnI	GGCC	8 cut(s)	25, 46, 176, 194, 431, 451, 476, 536
Bso31I	GGTCTC	2 cut(s)	131, 224
BsoBI	CYCGRG	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	48, 457, 594
Bsp1720I	GCTNAGC	1 cut(s)	687
Bsp19I	CCATGG	1 cut(s)	540
BspANI	GGCC	8 cut(s)	25, 46, 176, 194, 431, 451, 476, 536
BspCNI	CTCAG	5 cut(s)	89, 127, 481, 568, 679
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	2 cut(s)	43, 653
BspLI	GGNNCC	1 cut(s)	715
BspMAI	CTGCAG	1 cut(s)	559
BspTNI	GGTCTC	2 cut(s)	131, 224
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	9 cut(s)	7, 17, 26, 289, 354, 426, 523, 540, 639
BssMI	GATC	3 cut(s)	48, 457, 594
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	3 cut(s)	8, 236, 524
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	3 cut(s)	199, 366, 534
BstDEI	CTNAG	5 cut(s)	76, 135, 489, 576, 687
BstDSI	CCRYGG	3 cut(s)	17, 540, 639
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	2 cut(s)	43, 653
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	3 cut(s)	43, 364, 686
BstKTI	GATC	3 cut(s)	51, 460, 597
BstMAI	GTCTC	5 cut(s)	54, 79, 131, 224, 272
BstMBI	GATC	3 cut(s)	48, 457, 594
BstMCI	CGRYCG	2 cut(s)	47, 195
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 343, 374, 422, 437, 482, 542, 551, 566
BstNI	CCWGG	3 cut(s)	8, 236, 524
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	6 cut(s)	6, 234, 289, 354, 522, 721
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	2 cut(s)	43, 653
BstZI	CGGCCG	2 cut(s)	44, 192
BsuRI	GGCC	8 cut(s)	25, 46, 176, 194, 431, 451, 476, 536
BtgI	CCRYGG	3 cut(s)	17, 540, 639
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	670
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	5 cut(s)	267, 306, 416, 517, 603
Cac8I	GCNNGC	3 cut(s)	199, 366, 534
CfoI	GCGC	3 cut(s)	43, 364, 686
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	170, 430
CpoI	CGGWCCG	1 cut(s)	170
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	2 cut(s)	55, 562
CspI	CGGWCCG	1 cut(s)	170
CviAII	CATG	6 cut(s)	121, 142, 184, 230, 385, 541
CviQI	GTAC	2 cut(s)	55, 562
DdeI	CTNAG	5 cut(s)	76, 135, 489, 576, 687
DpnI	GATC	3 cut(s)	50, 459, 596
DpnII	GATC	3 cut(s)	48, 457, 594
EaeI	YGGCCR	4 cut(s)	44, 192, 474, 534
EagI	CGGCCG	2 cut(s)	44, 192
EciI	GGCGGA	1 cut(s)	215
EclXI	CGGCCG	2 cut(s)	44, 192
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	131, 224
Eco47I	GGWCC	1 cut(s)	170
Eco47III	AGCGCT	1 cut(s)	685
Eco52I	CGGCCG	2 cut(s)	44, 192
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	6, 234, 522
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	2 cut(s)	54, 79
FaeI	CATG	6 cut(s)	124, 145, 187, 233, 388, 544
FaqI	GGGAC	4 cut(s)	24, 272, 586, 705
FatI	CATG	6 cut(s)	120, 141, 183, 229, 384, 540
FauI	CCCGC	2 cut(s)	370, 433
FbaI	TGATCA	1 cut(s)	457
FokI	GGATG	1 cut(s)	677
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	3 cut(s)	42, 363, 685
GsaI	CCCAGC	1 cut(s)	573
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	8 cut(s)	25, 46, 176, 194, 431, 451, 476, 536
HapII	CCGG	7 cut(s)	173, 202, 216, 291, 356, 704, 723
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	3 cut(s)	43, 364, 686
Hin1II	CATG	6 cut(s)	124, 145, 187, 233, 388, 544
Hin6I	GCGC	3 cut(s)	41, 362, 684
HinP1I	GCGC	3 cut(s)	41, 362, 684
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	7 cut(s)	173, 202, 216, 291, 356, 704, 723
HphI	GGTGA	4 cut(s)	394, 422, 455, 505
Hpy166II	GTNNAC	2 cut(s)	323, 643
Hpy188III	TCNNGA	2 cut(s)	29, 704
Hpy8I	GTNNAC	2 cut(s)	323, 643
Hpy99I	CGWCG	2 cut(s)	658, 742
HpyAV	CCTTC	3 cut(s)	157, 254, 665
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	7 cut(s)	104, 127, 187, 346, 388, 557, 623
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 343, 374, 422, 437, 482, 542, 551, 566
HpyF3I	CTNAG	5 cut(s)	76, 135, 489, 576, 687
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	124, 145, 187, 233, 388, 544
HspAI	GCGC	3 cut(s)	41, 362, 684
Kpn2I	TCCGGA	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	48, 457, 594
LmnI	GCTCC	1 cut(s)	583
LweI	GCATC	5 cut(s)	103, 114, 309, 457, 655
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	265, 271, 443
MalI	GATC	3 cut(s)	50, 459, 596
MboI	GATC	3 cut(s)	48, 457, 594
MfeI	CAATTG	1 cut(s)	453
MluCI	AATT	1 cut(s)	453
MnlI	CCTC	9 cut(s)	15, 25, 31, 36, 187, 436, 484, 573, 651
MroI	TCCGGA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	4 cut(s)	134, 440, 488, 554
MspI	CCGG	7 cut(s)	173, 202, 216, 291, 356, 704, 723
MspR9I	CCNGG	6 cut(s)	8, 236, 291, 356, 524, 723
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	8, 236, 524
MvnI	CGCG	2 cut(s)	43, 653
MwoI	GCNNNNNNNGC	9 cut(s)	22, 343, 374, 422, 437, 482, 542, 551, 566
NciI	CCSGG	3 cut(s)	291, 356, 723
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	3 cut(s)	48, 457, 594
NlaIII	CATG	6 cut(s)	124, 145, 187, 233, 388, 544
NlaIV	GGNNCC	1 cut(s)	715
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	2 cut(s)	265, 443
OliI	CACNNNNGTG	1 cut(s)	608
PceI	AGGCCT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	6, 234, 522
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	3 cut(s)	6, 234, 522
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	2 cut(s)	170, 430
PstI	CTGCAG	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	56, 563
RsaNI	GTAC	2 cut(s)	55, 562
RseI	CAYNNNNRTG	1 cut(s)	608
Rsr2I	CGGWCCG	1 cut(s)	170
RsrII	CGGWCCG	1 cut(s)	170
Sau3AI	GATC	3 cut(s)	48, 457, 594
Sau96I	GGNCC	2 cut(s)	170, 430
ScrFI	CCNGG	6 cut(s)	8, 236, 291, 356, 524, 723
SetI	ASST	9 cut(s)	66, 265, 330, 412, 490, 495, 603, 636, 693
SfaNI	GCATC	5 cut(s)	103, 114, 309, 457, 655
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	608
Sse9I	AATT	1 cut(s)	453
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	756
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	6 cut(s)	6, 234, 289, 354, 522, 721
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	730
TasI	AATT	1 cut(s)	453
TauI	GCSGC	8 cut(s)	46, 197, 300, 377, 476, 539, 653, 752
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	5 cut(s)	274, 313, 423, 517, 610
TseFI	GTSAC	2 cut(s)	265, 443
Tsp45I	GTSAC	2 cut(s)	265, 443
TspDTI	ATGAA	2 cut(s)	17, 373
TspGWI	ACGGA	3 cut(s)	34, 61, 72
TspRI	CASTG	5 cut(s)	274, 313, 423, 517, 610
VpaK11BI	GGWCC	1 cut(s)	170
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.