Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Forward (+)

52185958 .. 52189053

Gene Structure 3096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGTCAGGAACAACAACATCGACCCCAGCAGGGTGACCAGCTGGAACCGATCAAGTACGGCGACGTGTTCAACGTCTCCGGTGAGTTGGCGTCGAAACCTATTGCCCCACGCGACGCCGCCACCATGCAGGCTGCCGAAAACCTAGTCCTCGGAGAAACTCAGAGAGGCGGTCCGGCAGCAGTCATGCAGTCGGCGGCTACATACAACGAGCGAACCGGTCTAGTCGGCCATCGTGACGCCACCGATGCCACTAGTGAGGATGGTGTTACCGTGTCGGAATCAATCAATCTCGATGGTAACAAAGTTATCACCGAAAGAGTTGCTGGGCAGGTTGTGGGACAATATGTGGAGCCACCGCCTGGGGCATCTCCGGCAGCAGTAGTTCTTGAGCACGATGCAATCACAATTGGCGAGGCATTCGAGGCAACTGCTCTCTCTGCCGGTGACAAGCCGGTCGACCAAAGCGACGCAGCTGCCATTCAAGCCGCAGAGATGAGAGCCACCGGGAGTAGTAAGATATCTCCGGGAGGTTTGGCGGCTATAGCTCAGTATGCAGATGCCACTCAGAAGATGGGTTGTGACAAACCGGTGACTCGTGAGGATGCGAAGGCCATTATAGGAGCAGAGATAAGGAACAACCCTAATATGAGCACTACTCCTGGTGGAATTGCTGAATCAATGGCTGCTGCAGCTAGCAAGATAAACTTAAAACTTCACATTGGTCCTTGTTTAACTATTCATAATTTCGATCGTAGACAAATTAGAATTGATTGCTATTTGCAAAAATACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

265

Amino Acids

27.84

Weight (kDa)

5.09

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	18 - 72	8e-20	Seed maturation protein
SMP	PF04927	135 - 186	1.7e-19	Seed maturation protein
SMP	PF04927	187 - 233	2e-15	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	2 cut(s)	459, 757
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	3 cut(s)	92, 117, 240
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	32, 362
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	2 cut(s)	218, 589
AgsI	TTSAA	2 cut(s)	73, 485
AhlI	ACTAGT	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	361, 661
AluBI	AGCT	4 cut(s)	43, 476, 548, 695
AluI	AGCT	4 cut(s)	43, 476, 548, 695
Alw21I	GWGCWC	2 cut(s)	396, 656
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	2 cut(s)	229, 612
ApeKI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 686, 689, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	2 cut(s)	218, 589
AspS9I	GGNCC	2 cut(s)	173, 725
AsuC2I	CCSGG	2 cut(s)	508, 528
AsuHPI	GGTGA	5 cut(s)	47, 95, 304, 458, 604
AsuNHI	GCTAGC	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	173, 725
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	396, 656
BbvI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 673, 676, 704
BccI	CCATC	4 cut(s)	240, 257, 290, 568
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	6 cut(s)	305, 339, 413, 447, 458, 492
BciT130I	CCWGG	2 cut(s)	363, 663
BcnI	CCSGG	2 cut(s)	508, 528
BcoDI	GTCTC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	4 cut(s)	146, 224, 255, 696
BfmI	CTRYAG	2 cut(s)	543, 690
BfuAI	ACCTGC	1 cut(s)	322
Bme1390I	CCNGG	4 cut(s)	363, 508, 528, 663
Bme18I	GGWCC	2 cut(s)	173, 725
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	173, 725
BmiI	GGNNCC	2 cut(s)	48, 354
BmrFI	CCNGG	4 cut(s)	363, 508, 528, 663
BmsI	GCATC	5 cut(s)	238, 377, 388, 550, 595
BmtI	GCTAGC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	643, 675
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	508, 528
BsaHI	GRCGYC	3 cut(s)	92, 117, 240
BsaJI	CCNNGG	2 cut(s)	151, 362
BsaWI	WCCGGW	3 cut(s)	80, 218, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 362
Bse118I	RCCGGY	4 cut(s)	218, 443, 454, 589
BseBI	CCWGG	2 cut(s)	363, 663
BseDI	CCNNGG	2 cut(s)	151, 362
BseGI	GGATG	2 cut(s)	268, 610
BseLI	CCNNNNNNNGG	2 cut(s)	32, 362
BseMII	CTCAG	3 cut(s)	176, 563, 581
BseXI	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 673, 676, 704
BseYI	CCCAGC	2 cut(s)	27, 326
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	2 cut(s)	459, 754
BshFI	GGCC	2 cut(s)	231, 614
BshTI	ACCGGT	2 cut(s)	218, 589
BsiEI	CGRYCG	2 cut(s)	459, 754
BsiHKAI	GWGCWC	2 cut(s)	396, 656
BsiSI	CCGG	9 cut(s)	81, 176, 219, 374, 444, 455, 507, 527, 590
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	32, 362
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	231, 614
Bsp1286I	GDGCHC	2 cut(s)	396, 656
Bsp143I	GATC	2 cut(s)	51, 751
BspACI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
BspANI	GGCC	2 cut(s)	231, 614
BspCNI	CTCAG	3 cut(s)	175, 562, 580
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	48, 354
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	699
BsrFI	RCCGGY	4 cut(s)	218, 443, 454, 589
BssAI	RCCGGY	4 cut(s)	218, 443, 454, 589
BssECI	CCNNGG	2 cut(s)	151, 362
BssMI	GATC	2 cut(s)	51, 751
BssNI	GRCGYC	3 cut(s)	92, 117, 240
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	363, 663
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	3 cut(s)	92, 117, 240
BstC8I	GCNNGC	2 cut(s)	132, 697
BstDEI	CTNAG	3 cut(s)	162, 549, 567
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	268, 610
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	54, 754
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	51, 751
BstMCI	CGRYCG	2 cut(s)	459, 754
BstMWI	GCNNNNNNNGC	8 cut(s)	248, 374, 425, 440, 485, 545, 554, 692
BstNI	CCWGG	2 cut(s)	363, 663
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	361, 506, 526, 661
BstSFI	CTRYAG	2 cut(s)	543, 690
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 673, 676, 704
BsuRI	GGCC	2 cut(s)	231, 614
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	268, 610
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	132, 697
Cfr10I	RCCGGY	4 cut(s)	218, 443, 454, 589
Cfr13I	GGNCC	2 cut(s)	173, 725
CpoI	CGGWCCG	1 cut(s)	173
CseI	GACGC	4 cut(s)	81, 125, 248, 479
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	2 cut(s)	218, 589
CspI	CGGWCCG	1 cut(s)	173
CviAII	CATG	2 cut(s)	127, 187
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	162, 549, 567
DpnI	GATC	2 cut(s)	53, 753
DpnII	GATC	2 cut(s)	51, 751
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	173, 725
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	361, 661
EcoRV	GATATC	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	130, 190
FaiI	YATR	9 cut(s)	128, 188, 205, 348, 545, 555, 620, 650, 744
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	126, 186
FblI	GTMKAC	2 cut(s)	459, 757
FokI	GGATG	2 cut(s)	275, 617
FspBI	CTAG	4 cut(s)	146, 224, 255, 696
GsaI	CCCAGC	2 cut(s)	31, 330
HaeIII	GGCC	2 cut(s)	231, 614
HapII	CCGG	9 cut(s)	81, 176, 219, 374, 444, 455, 507, 527, 590
HgaI	GACGC	4 cut(s)	81, 125, 248, 479
Hin1I	GRCGYC	3 cut(s)	92, 117, 240
Hin1II	CATG	2 cut(s)	130, 190
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	4, 281, 595, 677
HpaII	CCGG	9 cut(s)	81, 176, 219, 374, 444, 455, 507, 527, 590
HphI	GGTGA	5 cut(s)	47, 95, 304, 458, 604
Hpy166II	GTNNAC	2 cut(s)	460, 758
Hpy188I	TCNGA	4 cut(s)	155, 165, 280, 570
Hpy188III	TCNNGA	5 cut(s)	8, 236, 293, 389, 599
Hpy8I	GTNNAC	2 cut(s)	460, 758
Hpy99I	CGWCG	4 cut(s)	68, 97, 119, 473
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	66, 75
HpyCH4V	TGCA	6 cut(s)	130, 190, 401, 557, 692, 784
HpyF10VI	GCNNNNNNNGC	8 cut(s)	248, 374, 425, 440, 485, 545, 554, 692
HpyF3I	CTNAG	3 cut(s)	162, 549, 567
HpySE526I	ACGT	2 cut(s)	66, 75
Hsp92I	GRCGYC	3 cut(s)	92, 117, 240
Hsp92II	CATG	2 cut(s)	130, 190
Kzo9I	GATC	2 cut(s)	51, 751
LmnI	GCTCC	2 cut(s)	352, 623
Lsp1109I	GCAGC	8 cut(s)	121, 191, 389, 463, 485, 673, 676, 704
LweI	GCATC	5 cut(s)	238, 377, 388, 550, 595
MaeI	CTAG	4 cut(s)	146, 224, 255, 696
MaeII	ACGT	2 cut(s)	66, 75
MaeIII	GTNAC	7 cut(s)	35, 236, 268, 299, 446, 581, 592
MalI	GATC	2 cut(s)	53, 753
MboI	GATC	2 cut(s)	51, 751
MboII	GAAGA	1 cut(s)	583
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	396, 656
MluCI	AATT	5 cut(s)	408, 669, 745, 762, 768
MlyI	GAGTC	2 cut(s)	13, 589
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	7 cut(s)	161, 161, 253, 409, 418, 524, 595
MseI	TTAA	2 cut(s)	710, 734
MspA1I	CMGCKG	2 cut(s)	43, 476
MspI	CCGG	9 cut(s)	81, 176, 219, 374, 444, 455, 507, 527, 590
MspR9I	CCNGG	4 cut(s)	363, 508, 528, 663
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	363, 663
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	8 cut(s)	248, 374, 425, 440, 485, 545, 554, 692
NciI	CCSGG	2 cut(s)	508, 528
NdeII	GATC	2 cut(s)	51, 751
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	2 cut(s)	130, 190
NlaIV	GGNNCC	2 cut(s)	48, 354
NmuCI	GTSAC	5 cut(s)	35, 236, 446, 581, 592
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 465
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	281, 677
PflMI	CCANNNNNTGG	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	526
PinAI	ACCGGT	2 cut(s)	218, 589
Ple19I	CGATCG	1 cut(s)	754
PleI	GAGTC	2 cut(s)	12, 589
PpsI	GAGTC	2 cut(s)	12, 589
Psp6I	CCWGG	2 cut(s)	361, 661
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	2 cut(s)	27, 326
PspGI	CCWGG	2 cut(s)	361, 661
PspN4I	GGNNCC	2 cut(s)	48, 354
PspPI	GGNCC	2 cut(s)	173, 725
PstI	CTGCAG	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	754
PvuII	CAGCTG	2 cut(s)	43, 476
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
Rsr2I	CGGWCCG	1 cut(s)	173
RsrII	CGGWCCG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	710, 734
Sau3AI	GATC	2 cut(s)	51, 751
Sau96I	GGNCC	2 cut(s)	173, 725
SchI	GAGTC	2 cut(s)	13, 589
ScrFI	CCNGG	4 cut(s)	363, 508, 528, 663
SduI	GDGCHC	2 cut(s)	396, 656
SfaNI	GCATC	5 cut(s)	238, 377, 388, 550, 595
SfcI	CTRYAG	2 cut(s)	543, 690
SinI	GGWCC	2 cut(s)	173, 725
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	5 cut(s)	408, 669, 745, 762, 768
SsiI	CCGC	6 cut(s)	120, 171, 197, 359, 489, 539
SspMI	CTAG	4 cut(s)	146, 224, 255, 696
StyD4I	CCNGG	4 cut(s)	361, 506, 526, 661
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	69, 78
TaqI	TCGA	6 cut(s)	22, 95, 294, 423, 459, 750
TasI	AATT	5 cut(s)	408, 669, 745, 762, 768
TauI	GCSGC	4 cut(s)	122, 200, 491, 542
TfiI	GAWTC	2 cut(s)	281, 677
Tru1I	TTAA	2 cut(s)	710, 734
Tru9I	TTAA	2 cut(s)	710, 734
TseFI	GTSAC	5 cut(s)	35, 236, 446, 581, 592
TseI	GCWGC	8 cut(s)	134, 179, 377, 473, 476, 686, 689, 692
Tsp45I	GTSAC	5 cut(s)	35, 236, 446, 581, 592
TspDTI	ATGAA	1 cut(s)	731
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	173, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	459, 757
XspI	CTAG	4 cut(s)	146, 224, 255, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.