Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002798

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594170 .. 19595602

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGTCAGGAACCGCCGAGGAGGACTCAGAAGGAAAAAGAACCCATCAAGTACGGCGACATTTTCAACGTCTCCGGCGACCTGGCATCCAAAACGGTGGCGCCACAAGATGCTGCGATGATGCAGACTGCTGAAAGCATGGTGTTGGGTCAGACTCAGAAGGGCGGTCCGGCCGCCGTCATGCAATCGGCCGCTACCCAAAACGAAAGAGCTGGCCTGGTCCGTCACGATGAGGCTACTGATGTAGCTGGAAATGAAGGTGTCACTGTTACAGAGACTGATGTCCCTGGAAGGCGAATAATCACTGAATCAGTTGGTGGACAGGTTATTGGCCAGTATGTGAAGCCAGTACCGGTTGCACAGCAAGCAGCTGTAGGAGGCTACAAGCAGCAGAATACAATAAGTATAGGGGAGGCACTGGAGGCCTCGGCCCAAACGGCTGGAGATAGGCCATTGGATCTGAGTGATGCCGCGGCAATTCAGGCAGCAGAGGTGAGAGCAACAGGCAGCAATGTCATAGTTCCAGGAGGCTTGGCTGCCACGGCTCAATCCGCTGCAGCCCACAATGCTTCAACTGACAGGGAGCAAGACAAGATTAAGGTTTCTGATGTGCTGTCGGGTGCGACTGCCAAGTTACCTGCGGATAAGGCGGCAACTATGGAGGATGCTCAAGGAGTGGTGGGTGCTGAGATGAGGAACAACCCCGACATGGTGTTACGTCCAGGTGGGGTGGCTGCTTCTGTTAATGCAGCTGCCAGGCTCAAAGAAAATATGAACGTGAATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

263

Amino Acids

26.96

Weight (kDa)

4.99

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 71	3.3e-19	Seed maturation protein
SMP	PF04927	134 - 191	5.8e-20	Seed maturation protein
SMP	PF04927	199 - 254	1.2e-17	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22490
fragaria_vesca	FvH4_2g23290 FvH4_2g23300 FvH4_4g15690
malus_domestica	MD03G1262300.v1.1 MD03G1262400.v1.1 MD11G1283000.v1.1 MD13G1194000.v1.1
prunus_persica	Prupe.1G014800_v2.0.a1 Prupe.8G238700_v2.0.a1
pyrus_communis	pycom03g21000 pycom13g16630
rosa_chinensis	RchiOBHm_Chr4g0416111 RchiOBHm_Chr6g0290671 RchiOBHm_Chr6g0290701
rosa_laevigata	RLG00000008018 RLG00000012186
rosa_multiflora	Rmu_sc0000043.1_g000012 Rmu_sc0000750.1_g000001 Rmu_sc0006791.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359910 Rroxscaffold_7G00176790 Rroxscaffold_7G00176810
rosa_rugosa	Rorug04G0138300 Rorug06G0214100 Rorug06G0214200
rosa_samantha	Rh4AG200800 Rh4BG198000 Rh4CG211900 Rh4DG198100 Rh6AG324600 Rh6AG324700 Rh6BG332300 Rh6CG338000 Rh6DG325300 Rh6DG325500
rosa_wichuraiana	Rw0G019010 Rw6G028180 Rw6G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	473
AciI	CCGC	9 cut(s)	14, 165, 174, 192, 471, 473, 552, 641, 650
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	3 cut(s)	171, 189, 331
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	53, 351
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	67, 573
AjnI	CCWGG	6 cut(s)	81, 216, 286, 523, 721, 755
AluBI	AGCT	4 cut(s)	212, 248, 371, 752
AluI	AGCT	4 cut(s)	212, 248, 371, 752
Alw26I	GTCTC	2 cut(s)	76, 269
AlwI	GGATC	1 cut(s)	465
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	7 cut(s)	171, 189, 214, 331, 423, 429, 449
AsiGI	ACCGGT	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	167, 220, 430
AsuHPI	GGTGA	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	167, 220
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	100
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	4 cut(s)	70, 161, 453, 558
BciT130I	CCWGG	6 cut(s)	83, 218, 288, 525, 723, 757
BcoDI	GTCTC	2 cut(s)	76, 269
BfaI	CTAG	1 cut(s)	787
BfmI	CTRYAG	2 cut(s)	372, 555
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	646
BglI	GCCNNNNNGGC	1 cut(s)	437
Bme1390I	CCNGG	6 cut(s)	83, 218, 288, 525, 723, 757
Bme18I	GGWCC	2 cut(s)	167, 220
BmgT120I	GGNCC	3 cut(s)	167, 220, 430
BmiI	GGNNCC	2 cut(s)	12, 102
BmrFI	CCNGG	6 cut(s)	83, 218, 288, 525, 723, 757
BmsI	GCATC	5 cut(s)	95, 100, 111, 457, 655
BoxI	GACNNNNGTC	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	2 cut(s)	440, 462
BpuEI	CTTGAG	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	17, 286, 426, 471, 540
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	334, 347, 423
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	6 cut(s)	83, 218, 288, 525, 723, 757
BseDI	CCNNGG	5 cut(s)	17, 286, 426, 471, 540
BseGI	GGATG	2 cut(s)	86, 670
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	4 cut(s)	41, 170, 452, 678
BseNI	ACTGG	3 cut(s)	334, 347, 423
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	2 cut(s)	171, 189
Bsh1236I	CGCG	1 cut(s)	473
Bsh1285I	CGRYCG	2 cut(s)	174, 192
BshFI	GGCC	7 cut(s)	173, 191, 216, 333, 425, 431, 451
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	352
BsiEI	CGRYCG	2 cut(s)	174, 192
BsiSI	CCGG	3 cut(s)	75, 170, 353
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	76, 269
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	7 cut(s)	173, 191, 216, 333, 425, 431, 451
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	9 cut(s)	14, 165, 174, 192, 471, 473, 552, 641, 650
BspANI	GGCC	7 cut(s)	173, 191, 216, 333, 425, 431, 451
BspCNI	CTCAG	4 cut(s)	40, 169, 453, 679
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	12, 102
BspMAI	CTGCAG	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	334, 347, 423
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	5 cut(s)	17, 286, 426, 471, 540
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	6 cut(s)	83, 218, 288, 525, 723, 757
Bst4CI	ACNGT	2 cut(s)	97, 268
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	214, 366
BstDEI	CTNAG	4 cut(s)	27, 156, 461, 687
BstDSI	CCRYGG	2 cut(s)	471, 540
BstF5I	GGATG	2 cut(s)	86, 670
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	76, 269
BstMBI	GATC	1 cut(s)	457
BstMCI	CGRYCG	2 cut(s)	174, 192
BstMWI	GCNNNNNNNGC	8 cut(s)	365, 422, 437, 482, 542, 551, 566, 647
BstNI	CCWGG	6 cut(s)	83, 218, 288, 525, 723, 757
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	6 cut(s)	81, 216, 286, 523, 721, 755
BstSFI	CTRYAG	2 cut(s)	372, 555
BstUI	CGCG	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	2 cut(s)	97, 440
BstYI	RGATCY	1 cut(s)	457
BstZI	CGGCCG	2 cut(s)	171, 189
BsuRI	GGCC	7 cut(s)	173, 191, 216, 333, 425, 431, 451
BtgI	CCRYGG	2 cut(s)	471, 540
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	86, 670
BtsIMutI	CAGTG	3 cut(s)	264, 303, 416
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	2 cut(s)	214, 366
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	167, 220, 430
Cfr42I	CCGCGG	1 cut(s)	474
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	52, 350
CspAI	ACCGGT	1 cut(s)	352
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	3 cut(s)	139, 181, 709
CviQI	GTAC	2 cut(s)	52, 350
DdeI	CTNAG	4 cut(s)	27, 156, 461, 687
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	3 cut(s)	171, 189, 331
EagI	CGGCCG	2 cut(s)	171, 189
EclXI	CGGCCG	2 cut(s)	171, 189
Eco147I	AGGCCT	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	167, 220
Eco52I	CGGCCG	2 cut(s)	171, 189
EcoRII	CCWGG	6 cut(s)	81, 216, 286, 523, 721, 755
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	3 cut(s)	142, 184, 712
FaiI	YATR	8 cut(s)	140, 182, 339, 407, 518, 659, 710, 773
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	138, 180, 708
FokI	GGATG	2 cut(s)	73, 677
FspBI	CTAG	1 cut(s)	787
GlaI	GCGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	440, 462
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	7 cut(s)	173, 191, 216, 333, 425, 431, 451
HapII	CCGG	3 cut(s)	75, 170, 353
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	142, 184, 712
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	4 cut(s)	4, 25, 154, 308
HpaII	CCGG	3 cut(s)	75, 170, 353
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	30, 153, 159, 462, 607
Hpy188III	TCNNGA	2 cut(s)	8, 227
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	25, 154, 251, 285
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyCH4IV	ACGT	3 cut(s)	69, 718, 777
HpyCH4V	TGCA	5 cut(s)	124, 184, 359, 557, 749
HpyF10VI	GCNNNNNNNGC	8 cut(s)	365, 422, 437, 482, 542, 551, 566, 647
HpyF3I	CTNAG	4 cut(s)	27, 156, 461, 687
HpySE526I	ACGT	3 cut(s)	69, 718, 777
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	142, 184, 712
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	583
LweI	GCATC	5 cut(s)	95, 100, 111, 457, 655
MaeI	CTAG	1 cut(s)	787
MaeII	ACGT	3 cut(s)	69, 718, 777
MaeIII	GTNAC	5 cut(s)	224, 262, 268, 633, 714
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MflI	RGATCY	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	333
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	3 cut(s)	13, 19, 148
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	597, 744
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	4 cut(s)	371, 473, 554, 752
MspI	CCGG	3 cut(s)	75, 170, 353
MspR9I	CCNGG	6 cut(s)	83, 218, 288, 525, 723, 757
MvaI	CCWGG	6 cut(s)	83, 218, 288, 525, 723, 757
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	8 cut(s)	365, 422, 437, 482, 542, 551, 566, 647
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	142, 184, 712
NlaIV	GGNNCC	2 cut(s)	12, 102
NmeAIII	GCCGAG	2 cut(s)	42, 407
NmuCI	GTSAC	2 cut(s)	224, 262
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	352
PleI	GAGTC	3 cut(s)	12, 19, 148
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	3 cut(s)	12, 19, 148
PshAI	GACNNNNGTC	1 cut(s)	281
Psp6I	CCWGG	6 cut(s)	81, 216, 286, 523, 721, 755
PspGI	CCWGG	6 cut(s)	81, 216, 286, 523, 721, 755
PspN4I	GGNNCC	2 cut(s)	12, 102
PspPI	GGNCC	3 cut(s)	167, 220, 430
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	2 cut(s)	371, 752
RsaI	GTAC	2 cut(s)	53, 351
RsaNI	GTAC	2 cut(s)	52, 350
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	597, 744
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	3 cut(s)	167, 220, 430
SchI	GAGTC	3 cut(s)	13, 19, 148
ScrFI	CCNGG	6 cut(s)	83, 218, 288, 525, 723, 757
SfaNI	GCATC	5 cut(s)	95, 100, 111, 457, 655
SfcI	CTRYAG	2 cut(s)	372, 555
SfoI	GGCGCC	1 cut(s)	102
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	167, 220
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	1 cut(s)	477
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	9 cut(s)	14, 165, 174, 192, 471, 473, 552, 641, 650
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	787
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	6 cut(s)	81, 216, 286, 523, 721, 755
TaaI	ACNGT	2 cut(s)	97, 268
TaiI	ACGT	3 cut(s)	72, 721, 780
TasI	AATT	1 cut(s)	477
TauI	GCSGC	5 cut(s)	176, 194, 473, 476, 653
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	597, 744
Tru9I	TTAA	2 cut(s)	597, 744
TscAI	CASTG	3 cut(s)	271, 310, 423
TseFI	GTSAC	2 cut(s)	224, 262
Tsp45I	GTSAC	2 cut(s)	224, 262
TspDTI	ATGAA	2 cut(s)	270, 788
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	3 cut(s)	271, 310, 423
VpaK11BI	GGWCC	2 cut(s)	167, 220
XspI	CTAG	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.