Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

8621986 .. 8623214

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGATGAAACTACCAGAGAGATGTTCTCACCTCATAATCTTCCTCTTGAAATGATGGAAGAGATTCTCTTAAGACTACCCGTAAAGTCATTGACGCGATTCAAATGCGTTTGCAGCTCCTGGAGATCTTTGATCTCAGAGACTCTGTTTGCTCTGAAACACGCTTTGATCTTGGAGACATCGAAGGCAACTACTTCCACGAAGAGTCCTTACGGAGTCATAACAACGTCTCGGTACCATCTCAAGTCATGCTGCATCCATTCTCTCTACAACGCGTCAACGGTCTACGTCTCAGAACATGATGGTGAGCTTTTAGGAAGAGATTACTATCAAGTCGTGGGGACGTGCCATGGATTGGTTTGTTTCCACGTAGATTACGACAAAAGTCTCTACCTGTGGAATCCAACCATCAAGCTTCAACAAAGATTGTCTAGTTCGGATCTTGAAACGAGCGATGATGAGTGTGTTGTAACGTATGGGTTTGGTTATGATGAATCTGAAGATGACTATAAAGTGGTTGCGTTGTTGCAACAAAGACACCAAGTGAAGATAGAGACAAAGATCTACTCAACGAGACAAAAGCTATGGAGAAGCAACACAAGTTTCCCATCTGGAGTTGTTGTTGCTGACAAATCAAGATCCGGAATCTACATCAACGGGACACTAAACTGGGCAGCCACTTCCTCATCATCGTCATGGACGATCATATCGTATGATATGTCACGCGATGAGTTCAAGGAGCTTCCAGGGCCAGTTTGTTGTGGCAGAGGATGTTTTACAATGACGCTTGGAGATTTAAGAGGATGTCTTTCGATGGTGTGTTATTGCAAAGGAGCTAATGCAGATGTTTGGGTGATGAAGGAGTTTGGAGAAGTATATTCTTGGTCTAAACTCTTGAGCATTCCTGGTTTGACCGACTTTGTTCGACCGCTTTGGATCTCAGACGGTTTAGTGGTTTTATTGGAGTTTAGATCCGGTTTAGCTCTCTATAACTGTTCCAATGGAAGGTTTCATTACCCAGTTTCAAACAGCATAAGTGGTTGTCGTGACGCCAAAGTTTATCTCAAGACAATGGTTTCTCCAAATGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

364

Amino Acids

41.12

Weight (kDa)

6.51

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 46	6.8e-10	F-box domain
F-box-like	PF12937	13 - 48	8.6e-07	F-box-like
FBA_3	PF08268	95 - 297	2.3e-19	F-box associated beta propeller domain
FBA_1	PF07734	110 - 307	7.7e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	3 cut(s)	97, 275, 726
AccIII	TCCGGA	1 cut(s)	641
AciI	CCGC	1 cut(s)	929
AclWI	GGATC	4 cut(s)	447, 633, 944, 966
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	1050
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	355, 1005
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	50, 103, 419, 446, 736, 1026
AjiI	CACGTC	1 cut(s)	345
AjnI	CCWGG	3 cut(s)	119, 745, 904
AluBI	AGCT	7 cut(s)	117, 310, 415, 583, 742, 836, 983
AluI	AGCT	7 cut(s)	117, 310, 415, 583, 742, 836, 983
Alw26I	GTCTC	7 cut(s)	134, 170, 234, 295, 392, 548, 568
AlwI	GGATC	4 cut(s)	447, 633, 944, 966
AlwNI	CAGNNNCTG	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	641
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	114, 252, 674
Asp700I	GAANNNNTTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	3 cut(s)	21, 317, 865
BanI	GGYRCC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbvI	GCAGC	3 cut(s)	126, 239, 686
BccI	CCATC	6 cut(s)	49, 246, 296, 416, 616, 808
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	3 cut(s)	121, 747, 906
BcoDI	GTCTC	7 cut(s)	134, 170, 234, 295, 392, 548, 568
BfaI	CTAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	70
BglII	AGATCT	2 cut(s)	125, 561
BisI	GCNGC	3 cut(s)	115, 253, 675
BlsI	GCNGC	3 cut(s)	116, 254, 676
Bme1390I	CCNGG	3 cut(s)	121, 747, 906
BmgBI	CACGTC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	3 cut(s)	121, 747, 906
BmrI	ACTGGG	2 cut(s)	679, 1013
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	679, 1013
BoxI	GACNNNNGTC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	142, 633
BpuEI	CTTGAG	3 cut(s)	227, 916, 1049
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	1050
BsaJI	CCNNGG	2 cut(s)	349, 746
BsaWI	WCCGGW	2 cut(s)	641, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 1005
Bse1I	ACTGG	3 cut(s)	674, 752, 1019
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	641
BseBI	CCWGG	3 cut(s)	121, 747, 906
BseDI	CCNNGG	2 cut(s)	349, 746
BseGI	GGATG	4 cut(s)	10, 255, 776, 809
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	355, 1005
BseMII	CTCAG	3 cut(s)	150, 306, 954
BseNI	ACTGG	3 cut(s)	674, 752, 1019
BseXI	GCAGC	3 cut(s)	126, 239, 686
Bsh1236I	CGCG	3 cut(s)	97, 275, 726
Bsh1285I	CGRYCG	1 cut(s)	929
BshFI	GGCC	1 cut(s)	751
BshNI	GGYRCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	642, 975
BslFI	GGGAC	2 cut(s)	355, 673
BslI	CCNNNNNNNGG	2 cut(s)	355, 1005
BsmAI	GTCTC	7 cut(s)	134, 170, 234, 295, 392, 548, 568
BsmBI	CGTCTC	2 cut(s)	234, 295
BsmFI	GGGAC	2 cut(s)	355, 673
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	1 cut(s)	751
Bsp13I	TCCGGA	1 cut(s)	641
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	1 cut(s)	929
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	3 cut(s)	149, 305, 953
BspEI	TCCGGA	1 cut(s)	641
BspFNI	CGCG	3 cut(s)	97, 275, 726
BspLI	GGNNCC	1 cut(s)	236
BspPI	GGATC	4 cut(s)	447, 633, 944, 966
BspT107I	GGYRCC	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	674, 752, 1019
BssECI	CCNNGG	2 cut(s)	349, 746
BssNI	GRCGYC	1 cut(s)	1050
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	3 cut(s)	121, 747, 906
Bst4CI	ACNGT	3 cut(s)	283, 947, 995
Bst6I	CTCTTC	3 cut(s)	54, 197, 313
BstACI	GRCGYC	1 cut(s)	1050
BstAFI	CTTAAG	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	136, 292, 940
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	4 cut(s)	10, 255, 776, 809
BstFNI	CGCG	3 cut(s)	97, 275, 726
BstMAI	GTCTC	7 cut(s)	134, 170, 234, 295, 392, 548, 568
BstMCI	CGRYCG	1 cut(s)	929
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 748
BstNI	CCWGG	3 cut(s)	121, 747, 906
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	119, 745, 904
BstUI	CGCG	3 cut(s)	97, 275, 726
BstV1I	GCAGC	3 cut(s)	126, 239, 686
BstX2I	RGATCY	6 cut(s)	125, 439, 561, 638, 936, 971
BstYI	RGATCY	6 cut(s)	125, 439, 561, 638, 936, 971
BsuRI	GGCC	1 cut(s)	751
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	2 cut(s)	468, 741
BtrI	CACGTC	1 cut(s)	345
BtsCI	GGATG	4 cut(s)	10, 255, 776, 809
CaiI	CAGNNNCTG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	4 cut(s)	103, 264, 793, 1058
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	249, 299, 350, 696
CviJI	RGCY	9 cut(s)	117, 310, 415, 583, 677, 742, 751, 836, 983
CviKI_1	RGCY	9 cut(s)	117, 310, 415, 583, 677, 742, 751, 836, 983
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	136, 292, 940
DraIII	CACNNNGTG	1 cut(s)	544
Eam1104I	CTCTTC	3 cut(s)	54, 197, 313
EarI	CTCTTC	3 cut(s)	54, 197, 313
Eco130I	CCWWGG	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	519
EcoRII	CCWGG	3 cut(s)	119, 745, 904
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
Esp3I	CGTCTC	2 cut(s)	234, 295
FaeI	CATG	4 cut(s)	252, 302, 353, 699
FaqI	GGGAC	2 cut(s)	355, 673
FatI	CATG	4 cut(s)	248, 298, 349, 695
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	115, 253, 675
FokI	GGATG	4 cut(s)	17, 242, 783, 816
Fsp4HI	GCNGC	3 cut(s)	115, 253, 675
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	3 cut(s)	115, 253, 675
GsuI	CTGGAG	2 cut(s)	142, 633
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	2 cut(s)	642, 975
HgaI	GACGC	4 cut(s)	103, 264, 793, 1058
Hin1I	GRCGYC	1 cut(s)	1050
Hin1II	CATG	4 cut(s)	252, 302, 353, 699
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	8 cut(s)	64, 99, 142, 205, 216, 400, 494, 645
HpaII	CCGG	2 cut(s)	642, 975
HphI	GGTGA	3 cut(s)	21, 317, 865
Hpy166II	GTNNAC	2 cut(s)	279, 286
Hpy188I	TCNGA	6 cut(s)	139, 156, 295, 439, 499, 943
Hpy188III	TCNNGA	8 cut(s)	47, 443, 612, 636, 642, 895, 1046, 1066
Hpy8I	GTNNAC	2 cut(s)	279, 286
HpyAV	CCTTC	3 cut(s)	178, 853, 999
HpyCH4III	ACNGT	3 cut(s)	283, 947, 995
HpyCH4IV	ACGT	5 cut(s)	227, 288, 344, 369, 473
HpyCH4V	TGCA	5 cut(s)	114, 255, 529, 828, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 748
HpyF3I	CTNAG	3 cut(s)	136, 292, 940
HpySE526I	ACGT	5 cut(s)	227, 288, 344, 369, 473
Hsp92I	GRCGYC	1 cut(s)	1050
Hsp92II	CATG	4 cut(s)	252, 302, 353, 699
Kpn2I	TCCGGA	1 cut(s)	641
KpnI	GGTACC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	122, 739, 833
Lsp1109I	GCAGC	3 cut(s)	126, 239, 686
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	5 cut(s)	227, 288, 344, 369, 473
MaeIII	GTNAC	3 cut(s)	469, 720, 1046
MboII	GAAGA	6 cut(s)	32, 71, 214, 330, 512, 559
MflI	RGATCY	6 cut(s)	125, 439, 561, 638, 936, 971
MluI	ACGCGT	1 cut(s)	273
MlyI	GAGTC	3 cut(s)	136, 214, 225
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	5 cut(s)	42, 54, 694, 761, 794
MroI	TCCGGA	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	71, 797
MslI	CAYNNNNRTG	2 cut(s)	303, 694
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	2 cut(s)	642, 975
MspR9I	CCNGG	3 cut(s)	121, 747, 906
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	3 cut(s)	121, 747, 906
MvnI	CGCG	3 cut(s)	97, 275, 726
MwoI	GCNNNNNNNGC	2 cut(s)	114, 748
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	4 cut(s)	252, 302, 353, 699
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	720, 1046
PcsI	WCGNNNNNNNCGW	3 cut(s)	375, 698, 707
PctI	GAATGC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	5 cut(s)	64, 99, 400, 494, 645
PflMI	CCANNNNNTGG	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	116, 254, 676
PleI	GAGTC	3 cut(s)	136, 213, 224
PpsI	GAGTC	3 cut(s)	136, 213, 224
Ppu21I	YACGTR	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	119, 745, 904
PspGI	CCWGG	3 cut(s)	119, 745, 904
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	6 cut(s)	125, 439, 561, 638, 936, 971
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	303, 694
SaqAI	TTAA	2 cut(s)	71, 797
SatI	GCNGC	3 cut(s)	115, 253, 675
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	3 cut(s)	136, 214, 225
ScrFI	CCNGG	3 cut(s)	121, 747, 906
SfaNI	GCATC	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	303, 694
SmlI	CTYRAG	4 cut(s)	70, 242, 895, 1064
SmoI	CTYRAG	4 cut(s)	70, 242, 895, 1064
SsiI	CCGC	1 cut(s)	929
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	119, 745, 904
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	283, 947, 995
TaiI	ACGT	5 cut(s)	230, 291, 347, 372, 476
TaqI	TCGA	3 cut(s)	182, 812, 925
TaqII	GACCGA	1 cut(s)	929
TfiI	GAWTC	5 cut(s)	64, 99, 400, 494, 645
Tru1I	TTAA	2 cut(s)	71, 797
Tru9I	TTAA	2 cut(s)	71, 797
TseFI	GTSAC	2 cut(s)	720, 1046
TseI	GCWGC	3 cut(s)	114, 252, 674
Tsp45I	GTSAC	2 cut(s)	720, 1046
TspDTI	ATGAA	4 cut(s)	21, 507, 872, 1001
TspGWI	ACGGA	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.