Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

1863727 .. 1864823

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAAGGATCATCAATAGTGCCTTACCTTCCACATACTCGAGGTGCAACTGGTACGATATTACTATGGAATCCAAGTACAAGAGACTTCAAAGTGTTACCGAGTACTTCTGAAGTAGGAGTAGTACATGTGGAACGAAAAGATGATGAATGGATATATGGATTTGGTTACAACTACAATAGTGACGACTTCAAGATCTATCTTACATGGTTACAAACTTACAATGGATTTAGTTATAGATCCATAATTTACACATTACGGTCGAATTCTGGGAGGAGGATTCAGGACTCTCCTCTTGGTATCTTGTTTACTATTAAGCATTCTGCTTTTGCTAGTGGGGCTCTACATTGGAGTGCTGCAAAAACTGACTGCATTGGAGCAATTGTTTCGTTTGATTTAACAAGTGAGACATACAAGGAACTGCCACTACCACATCCTGATATTCGGTGTTATAAACTAGAAGCGGGGGCTTCAAGAGGTAAGCTACTTGCTGGAGAAGACGATGATAGAGGTTATTATATTTGGGTGATGAAGGAGTATGGGGTGCTAGAGTCTTGGACCAAAACGGTCAAAATTCCAAGGATGTGGGGCACTGTAGGGCGTATCATCTTACAACCGATGACACGGTTTATGGAAAATGGGGAAATTCTGTTGTATGCAAGTGGGAATCCGGTTTCCTACAATGCAAATAAAAATTCTGAAATACAGTATAAGGCACTAAAGCAGCTCACAGTTCATAGTTCACTTCTGCTTTTAAATCCTGAAATACACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

259

Amino Acids

29.27

Weight (kDa)

8.37

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	19 - 193	9.5e-15	F-box associated beta propeller domain
FBA_3	PF08268	21 - 220	4.4e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	16, 234
AcsI	RAATTY	4 cut(s)	265, 573, 645, 694
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	4 cut(s)	55, 79, 106, 126
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	91, 193, 474
AluBI	AGCT	2 cut(s)	484, 727
AluI	AGCT	2 cut(s)	484, 727
Alw26I	GTCTC	2 cut(s)	78, 401
AlwI	GGATC	2 cut(s)	16, 234
Ama87I	CYCGRG	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	356, 724
ApoI	RAATTY	4 cut(s)	265, 573, 645, 694
AspS9I	GGNCC	1 cut(s)	558
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	343, 736
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BcoDI	GTCTC	2 cut(s)	78, 401
BfaI	CTAG	3 cut(s)	333, 458, 548
BfmI	CTRYAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	357, 725
BlsI	GCNGC	2 cut(s)	358, 726
BmcAI	AGTACT	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	433, 588
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	2 cut(s)	282, 289
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	343, 736
Bsh1285I	CGRYCG	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	78, 401
BsmI	GAATGC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	343, 593
Bsp143I	GATC	3 cut(s)	8, 195, 239
BspACI	CCGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	16, 234
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	3 cut(s)	8, 195, 239
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	6 cut(s)	261, 568, 595, 627, 708, 733
BstF5I	GGATG	2 cut(s)	433, 588
BstKTI	GATC	3 cut(s)	11, 198, 242
BstMAI	GTCTC	2 cut(s)	78, 401
BstMBI	GATC	3 cut(s)	8, 195, 239
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	343, 736
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	195, 239
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	2 cut(s)	195, 239
BtsCI	GGATG	2 cut(s)	433, 588
BtsIMutI	CAGTG	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	558
Csp6I	GTAC	4 cut(s)	54, 78, 105, 125
CviAII	CATG	3 cut(s)	128, 207, 774
CviJI	RGCY	4 cut(s)	341, 470, 484, 727
CviKI_1	RGCY	4 cut(s)	341, 470, 484, 727
CviQI	GTAC	4 cut(s)	54, 78, 105, 125
DpnI	GATC	3 cut(s)	10, 197, 241
DpnII	GATC	3 cut(s)	8, 195, 239
DraI	TTTAAA	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	131, 210, 777
FatI	CATG	3 cut(s)	127, 206, 773
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	357, 725
FokI	GGATG	2 cut(s)	420, 595
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	2 cut(s)	357, 725
FspBI	CTAG	3 cut(s)	333, 458, 548
GluI	GCNGC	2 cut(s)	357, 725
GsuI	CTGGAG	1 cut(s)	513
HapII	CCGG	1 cut(s)	671
Hin1II	CATG	3 cut(s)	131, 210, 777
HinfI	GANTC	5 cut(s)	70, 280, 287, 551, 667
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	2 cut(s)	309, 743
Hpy188I	TCNGA	2 cut(s)	112, 700
Hpy188III	TCNNGA	5 cut(s)	193, 284, 437, 474, 761
Hpy8I	GTNNAC	2 cut(s)	309, 743
HpyAV	CCTTC	2 cut(s)	38, 526
HpyCH4III	ACNGT	6 cut(s)	261, 568, 595, 627, 708, 733
HpyCH4V	TGCA	6 cut(s)	4, 47, 359, 372, 659, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	131, 210, 777
Kzo9I	GATC	3 cut(s)	8, 195, 239
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	6 cut(s)	36, 255, 269, 450, 477, 684
Lsp1109I	GCAGC	2 cut(s)	343, 736
MaeI	CTAG	3 cut(s)	333, 458, 548
MaeIII	GTNAC	4 cut(s)	96, 167, 182, 210
MalI	GATC	3 cut(s)	10, 197, 241
MboI	GATC	3 cut(s)	8, 195, 239
MboII	GAAGA	1 cut(s)	509
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	2 cut(s)	195, 239
MhlI	GDGCHC	2 cut(s)	343, 593
MluCI	AATT	6 cut(s)	246, 265, 381, 573, 645, 694
MlyI	GAGTC	2 cut(s)	281, 560
MnlI	CCTC	6 cut(s)	35, 267, 270, 303, 470, 503
MseI	TTAA	3 cut(s)	315, 398, 755
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	8, 195, 239
NlaIII	CATG	3 cut(s)	131, 210, 777
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	39
PciI	ACATGT	1 cut(s)	127
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	70, 280, 667
PkrI	GCNGC	2 cut(s)	358, 726
PleI	GAGTC	2 cut(s)	281, 559
PpsI	GAGTC	2 cut(s)	281, 559
PscI	ACATGT	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	558
PspXI	VCTCGAGB	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PsuI	RGATCY	2 cut(s)	195, 239
RsaI	GTAC	4 cut(s)	55, 79, 106, 126
RsaNI	GTAC	4 cut(s)	54, 78, 105, 125
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	315, 398, 755
SatI	GCNGC	2 cut(s)	357, 725
Sau3AI	GATC	3 cut(s)	8, 195, 239
Sau96I	GGNCC	1 cut(s)	558
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	2 cut(s)	281, 560
SduI	GDGCHC	2 cut(s)	343, 593
SetI	ASST	6 cut(s)	30, 46, 481, 486, 514, 729
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	558
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	246, 265, 381, 573, 645, 694
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	3 cut(s)	333, 458, 548
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	6 cut(s)	261, 568, 595, 627, 708, 733
TaqI	TCGA	2 cut(s)	40, 263
TasI	AATT	6 cut(s)	246, 265, 381, 573, 645, 694
TatI	WGTACW	3 cut(s)	77, 104, 124
TfiI	GAWTC	3 cut(s)	70, 280, 667
Tru1I	TTAA	3 cut(s)	315, 398, 755
Tru9I	TTAA	3 cut(s)	315, 398, 755
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	356, 724
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	162, 545, 725
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	4 cut(s)	265, 573, 645, 694
XceI	RCATGY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	3 cut(s)	333, 458, 548
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.