Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

1819220 .. 1820499

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG026200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATTTGGTTACGACTAAAATAGTGACGATTCAAGGTGCTAATGGAGCTCAGGACTCTCCTCTTGGTATCTTGTTTACTAGTAAGCATTCTGCTTTTGTTAGTGGAGCTCTACATTGGAGTGCTGCAAAAACTGACTGCATTGGAGCAATTGTTTTGTTTGATTTAACAAGTGAGACATACAAGGAACTGCCACTACCACTTCCTGATATTCGGTGTTATAAACTAGAAGTGGGGGCTTCAAGAGGTAAACTACTTGCTAGAGAAGACAATGATAGAGGTTATTATATTTGGGTGATGAAGGAGTATGGGGTGCTAGAGTCTTGGACCAAAGCGGTCAAAATTCCAAGGATGTGGGGCACTTTAGGGCGTATCATCTTACAACCGATGACATGGTTTATGGAAAATGGGAAAAATTATGTTGTATGCAAGTGGGAATCCGGTTTCCTACAATGCTCACTTGTGTATTTTGCTAGGGATGAGAGCTTAGTCTCACCCAATGCTTACAACCTTGGAGTGAACAAAAATTTTCGTCTCAAGATCGAAATTTGTCGAAGATCTTGGGGTCGAGACGCCACCGTGGCCGTTTATACCCTTACGAGCACCACTGAGTTGAGGCTAATTTACGCCAGGCCTTCGCTTGTAGCAGTCCTACAACGTATGTTGATTGGATTGATAGATGTCGATACGCAGCTACCTTTTGTTTATTATCTTTCATCCACGGAAGACACTGTGACTTTGTTTAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

250

Amino Acids

28.32

Weight (kDa)

8.72

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AciI	CCGC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	3 cut(s)	342, 526, 546
AcyI	GRCGYC	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	35, 243
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	4 cut(s)	50, 110, 486, 694
AluI	AGCT	4 cut(s)	50, 110, 486, 694
Alw21I	GWGCWC	3 cut(s)	52, 112, 605
Alw26I	GTCTC	4 cut(s)	170, 496, 539, 564
AoxI	GGCC	2 cut(s)	582, 632
ApeKI	GCWGC	2 cut(s)	125, 691
ApoI	RAATTY	3 cut(s)	342, 526, 546
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	307, 486
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	52, 112
BbsI	GAAGAC	2 cut(s)	273, 732
Bbv12I	GWGCWC	3 cut(s)	52, 112, 605
BbvI	GCAGC	2 cut(s)	112, 703
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	4 cut(s)	170, 496, 539, 564
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	5 cut(s)	81, 227, 261, 317, 474
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	557
BisI	GCNGC	2 cut(s)	126, 692
BlsI	GCNGC	2 cut(s)	127, 693
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	631
BpiI	GAAGAC	2 cut(s)	273, 732
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	4 cut(s)	347, 511, 579, 720
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	4 cut(s)	347, 511, 579, 720
BseGI	GGATG	3 cut(s)	357, 484, 716
BseMII	CTCAG	2 cut(s)	65, 600
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	112, 703
BshFI	GGCC	2 cut(s)	584, 634
BsiHKAI	GWGCWC	3 cut(s)	52, 112, 605
BsiSI	CCGG	1 cut(s)	441
BsmAI	GTCTC	4 cut(s)	170, 496, 539, 564
BsmBI	CGTCTC	2 cut(s)	539, 564
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	584, 634
Bsp1286I	GDGCHC	4 cut(s)	52, 112, 362, 605
Bsp143I	GATC	2 cut(s)	540, 557
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	584, 634
BspCNI	CTCAG	2 cut(s)	64, 601
BssECI	CCNNGG	4 cut(s)	347, 511, 579, 720
BssMI	GATC	2 cut(s)	540, 557
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	347, 511
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	2 cut(s)	580, 733
BstACI	GRCGYC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	51, 487, 609
BstDSI	CCRYGG	2 cut(s)	579, 720
BstF5I	GGATG	3 cut(s)	357, 484, 716
BstKTI	GATC	2 cut(s)	543, 560
BstMAI	GTCTC	4 cut(s)	170, 496, 539, 564
BstMBI	GATC	2 cut(s)	540, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 581
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	629
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	112, 703
BstV2I	GAAGAC	2 cut(s)	273, 732
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	584, 634
BtgI	CCRYGG	2 cut(s)	579, 720
BtsCI	GGATG	3 cut(s)	357, 484, 716
BtsIMutI	CAGTG	2 cut(s)	606, 729
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	1 cut(s)	581
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	8 cut(s)	50, 110, 239, 486, 584, 619, 634, 694
CviKI_1	RGCY	8 cut(s)	50, 110, 239, 486, 584, 619, 634, 694
DdeI	CTNAG	3 cut(s)	51, 487, 609
DpnI	GATC	2 cut(s)	542, 559
DpnII	GATC	2 cut(s)	540, 557
EaeI	YGGCCR	1 cut(s)	582
Ecl136II	GAGCTC	2 cut(s)	50, 110
Eco130I	CCWWGG	2 cut(s)	347, 511
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	52, 112
Eco47I	GGWCC	1 cut(s)	327
Eco53kI	GAGCTC	2 cut(s)	50, 110
EcoICRI	GAGCTC	2 cut(s)	50, 110
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	347, 511
EcoT38I	GRGCYC	2 cut(s)	52, 112
ErhI	CCWWGG	2 cut(s)	347, 511
Esp3I	CGTCTC	2 cut(s)	539, 564
FaeI	CATG	1 cut(s)	396
FatI	CATG	1 cut(s)	392
Fnu4HI	GCNGC	2 cut(s)	126, 692
FokI	GGATG	3 cut(s)	364, 491, 703
FriOI	GRGCYC	2 cut(s)	52, 112
Fsp4HI	GCNGC	2 cut(s)	126, 692
FspBI	CTAG	5 cut(s)	81, 227, 261, 317, 474
GluI	GCNGC	2 cut(s)	126, 692
HaeIII	GGCC	2 cut(s)	584, 634
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	581
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	1 cut(s)	396
HinfI	GANTC	4 cut(s)	31, 56, 320, 437
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	307, 486
Hpy166II	GTNNAC	3 cut(s)	78, 251, 520
Hpy188III	TCNNGA	5 cut(s)	53, 206, 243, 538, 569
Hpy8I	GTNNAC	3 cut(s)	78, 251, 520
HpyAV	CCTTC	2 cut(s)	295, 645
HpyCH4III	ACNGT	2 cut(s)	580, 733
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	128, 141, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 581
HpyF3I	CTNAG	3 cut(s)	51, 487, 609
HpySE526I	ACGT	1 cut(s)	658
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	540, 557
LmnI	GCTCC	3 cut(s)	47, 107, 146
LpnPI	CCDG	5 cut(s)	38, 219, 454, 616, 643
Lsp1109I	GCAGC	2 cut(s)	112, 703
MaeI	CTAG	5 cut(s)	81, 227, 261, 317, 474
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	3 cut(s)	10, 25, 733
MalI	GATC	2 cut(s)	542, 559
MboI	GATC	2 cut(s)	540, 557
MboII	GAAGA	3 cut(s)	278, 567, 737
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	4 cut(s)	52, 112, 362, 605
MluCI	AATT	6 cut(s)	150, 342, 415, 526, 546, 621
MlyI	GAGTC	2 cut(s)	50, 329
MnlI	CCTC	4 cut(s)	72, 239, 272, 609
MseI	TTAA	2 cut(s)	167, 744
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	631
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	47, 581
NdeII	GATC	2 cut(s)	540, 557
NlaIII	CATG	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	25, 733
PceI	AGGCCT	1 cut(s)	634
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	31, 437
PkrI	GCNGC	2 cut(s)	127, 693
PleI	GAGTC	2 cut(s)	50, 328
PpsI	GAGTC	2 cut(s)	50, 328
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	2 cut(s)	52, 112
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspPI	GGNCC	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	52, 112
SaqAI	TTAA	2 cut(s)	167, 744
SatI	GCNGC	2 cut(s)	126, 692
Sau3AI	GATC	2 cut(s)	540, 557
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	2 cut(s)	50, 329
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	4 cut(s)	52, 112, 362, 605
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	6 cut(s)	150, 342, 415, 526, 546, 621
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	5 cut(s)	81, 227, 261, 317, 474
SstI	GAGCTC	2 cut(s)	52, 112
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	2 cut(s)	347, 511
TaaI	ACNGT	2 cut(s)	580, 733
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	4 cut(s)	543, 553, 568, 684
TasI	AATT	6 cut(s)	150, 342, 415, 526, 546, 621
TfiI	GAWTC	2 cut(s)	31, 437
Tru1I	TTAA	2 cut(s)	167, 744
Tru9I	TTAA	2 cut(s)	167, 744
TscAI	CASTG	2 cut(s)	613, 736
TseFI	GTSAC	2 cut(s)	25, 733
TseI	GCWGC	2 cut(s)	125, 691
Tsp45I	GTSAC	2 cut(s)	25, 733
TspDTI	ATGAA	2 cut(s)	314, 705
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	2 cut(s)	613, 736
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	3 cut(s)	342, 526, 546
XspI	CTAG	5 cut(s)	81, 227, 261, 317, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.