Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

26407166 .. 26408362

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGATTCTGTTAGAGCAGCACGTTCAAGAAAGCCAAAGCAACAAGGGTCAGCATCAGCCATTCCTCACCTTCCCTTCGAGATAATCTTTGAAATACTTGCAAGACTTCCTGTCAAGTCTTTGCTACAATTTAAAGCTGTGTGCAAGTCATGGCTGTCCTTAGTCTCAAGTACTGAGTTCGTGAAAACACATCATCTAATTCTATGTGCTCAAAATTATTACAGCAGCAGCACGACTTCCAAAAGACTGATCATAAGTCGGGAATCTAAAGTTCTAATGTGTTACTCTCCAGAATCCACACCGCGAGAAATTCCAATTGATGTCCTCATCGAGAAGCTTAATCCTGCTGGTGGCCGAAATCGTCATCAAGCCAGACTCGATTTCAATATCAGAGGTTCTTGTGATGGTTTGGTATGTGTAGAAGTCCTTGATAGTTATAAGGTTAGGGTTTTCTTGTGGAATCCATGTACCAGAGAGTGTGTTGAAGTCAAAGAAGGCAATGATGAGGATAGTCATAGTTTACCGATGTTCCATGGATTTGGTTATGACTACAATAGTGACGACTACAAGGTACTGAGTGTGCTTTACCAGTCGAAAACTGCGACTTTTAAATCAATGATCTACACATTAAGAACAAATTCTTGGAGAAGGATTCAAGACTATCCTCTTAGTGCCAGTCTGACTGAGAAGTGTGCTACTTTTGTAAGTGGAGCTCTATATTGGTTGGTGAGAAGAATATTAAATGATGTGCTCACTAAGAACAGAGTGGGTGCTTTAGAAGGGTGCTTGTGCCTACTAGTTTTCAACATAACTTCTCGTTCTCAGAACGAACTATGGGTGATGAAGGAATATGGGGTGAAAGAGTCTTGGACTAAATATCTCACAATCCCACAAGCGTTGGGATGTGGATATTTGATATCCTTATCACGGCTGATATGGTTTTTGGGAAACGATGAAATCGTATTAGACTTGGGTAGGGAAATGGTTTTGTACAATACAAAGACAAAATCAAGAACGTATCTCGGAATTCCAGTATGTAGTTATTATAAGAGTCATGTCTATGTAGAGAGTCTTGTTTCACTCAATGCTTACAATGAGCTTGGAAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

371

Amino Acids

42.24

Weight (kDa)

9.01

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 61	3.2e-10	F-box domain
F-box-like	PF12937	21 - 60	3.9e-08	F-box-like
FBA_1	PF07734	126 - 270	1.3e-16	F-box associated beta propeller domain
FBA_3	PF08268	128 - 245	1.5e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	438, 1047
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	309, 637, 1026
AfaI	GTAC	4 cut(s)	172, 469, 573, 992
AfiI	CCNNNNNNNGG	2 cut(s)	350, 927
AgsI	TTSAA	6 cut(s)	27, 92, 385, 485, 656, 805
AhdI	GACNNNNNGTC	1 cut(s)	110
AhlI	ACTAGT	1 cut(s)	796
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AluBI	AGCT	4 cut(s)	137, 337, 713, 1099
AluI	AGCT	4 cut(s)	137, 337, 713, 1099
Alw21I	GWGCWC	3 cut(s)	211, 715, 753
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	17, 225, 228
ApoI	RAATTY	3 cut(s)	309, 637, 1026
Asp700I	GAANNNNTTC	1 cut(s)	637
AsuHPI	GGTGA	4 cut(s)	59, 739, 850, 868
BanII	GRGCYC	1 cut(s)	715
Bbv12I	GWGCWC	3 cut(s)	211, 715, 753
BbvI	GCAGC	3 cut(s)	29, 237, 240
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	944
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	169
BcuI	ACTAGT	1 cut(s)	796
BfaI	CTAG	1 cut(s)	797
BisI	GCNGC	3 cut(s)	18, 226, 229
BlsI	GCNGC	3 cut(s)	19, 227, 230
BmcAI	AGTACT	1 cut(s)	172
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 927
Bse1I	ACTGG	3 cut(s)	589, 675, 1031
Bse3DI	GCAATG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	908
BseLI	CCNNNNNNNGG	2 cut(s)	350, 927
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	4 cut(s)	165, 566, 675, 836
BseNI	ACTGG	3 cut(s)	589, 675, 1031
BseXI	GCAGC	3 cut(s)	29, 237, 240
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	3 cut(s)	211, 715, 753
BslI	CCNNNNNNNGG	2 cut(s)	350, 927
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	211, 715, 753
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	2 cut(s)	249, 618
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	4 cut(s)	166, 567, 676, 835
BspFNI	CGCG	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	589, 675, 1031
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	2 cut(s)	249, 618
BssT1I	CCWWGG	1 cut(s)	532
BstAUI	TGTACA	1 cut(s)	990
BstDEI	CTNAG	7 cut(s)	160, 174, 575, 668, 684, 756, 822
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	908
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	252, 621
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	249, 618
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	29, 237, 240
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	908
Csp6I	GTAC	4 cut(s)	171, 468, 572, 991
CspCI	CAANNNNNGTGG	2 cut(s)	879, 914
CviAII	CATG	4 cut(s)	150, 465, 533, 1055
CviQI	GTAC	4 cut(s)	171, 468, 572, 991
DdeI	CTNAG	7 cut(s)	160, 174, 575, 668, 684, 756, 822
DpnI	GATC	2 cut(s)	251, 620
DpnII	GATC	2 cut(s)	249, 618
DraI	TTTAAA	2 cut(s)	133, 610
DriI	GACNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	352
Eam1105I	GACNNNNNGTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	715
Eco32I	GATATC	1 cut(s)	918
Eco53kI	GAGCTC	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	1026
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	4 cut(s)	153, 468, 536, 1058
FatI	CATG	4 cut(s)	149, 464, 532, 1054
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	18, 226, 229
FokI	GGATG	1 cut(s)	915
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	3 cut(s)	18, 226, 229
FspBI	CTAG	1 cut(s)	797
GluI	GCNGC	3 cut(s)	18, 226, 229
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	4 cut(s)	153, 468, 536, 1058
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	9 cut(s)	5, 263, 293, 375, 460, 652, 863, 1051, 1069
HphI	GGTGA	4 cut(s)	59, 739, 850, 868
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	392, 681, 825, 1025
Hpy188III	TCNNGA	8 cut(s)	27, 79, 181, 260, 290, 331, 656, 1011
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	6 cut(s)	80, 85, 488, 642, 773, 838
HpyCH4IV	ACGT	2 cut(s)	22, 1016
HpyCH4V	TGCA	2 cut(s)	101, 144
HpyF3I	CTNAG	7 cut(s)	160, 174, 575, 668, 684, 756, 822
HpySE526I	ACGT	2 cut(s)	22, 1016
Hsp92II	CATG	4 cut(s)	153, 468, 536, 1058
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	249, 618
LmnI	GCTCC	1 cut(s)	710
LpnPI	CCDG	9 cut(s)	123, 303, 333, 357, 385, 484, 602, 688, 1044
Lsp1109I	GCAGC	3 cut(s)	29, 237, 240
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	2 cut(s)	22, 1016
MaeIII	GTNAC	2 cut(s)	281, 557
MalI	GATC	2 cut(s)	251, 620
MboI	GATC	2 cut(s)	249, 618
MboII	GAAGA	1 cut(s)	744
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	3 cut(s)	211, 715, 753
MluCI	AATT	7 cut(s)	128, 198, 214, 309, 315, 637, 1026
MlyI	GAGTC	4 cut(s)	369, 872, 1060, 1078
MnlI	CCTC	5 cut(s)	75, 335, 386, 499, 675
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	5 cut(s)	132, 339, 609, 629, 740
MslI	CAYNNNNRTG	1 cut(s)	1059
MunI	CAATTG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	2 cut(s)	249, 618
NlaIII	CATG	4 cut(s)	153, 468, 536, 1058
NmuCI	GTSAC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	2 cut(s)	599, 957
PdmI	GAANNNNTTC	1 cut(s)	637
PfeI	GAWTC	5 cut(s)	5, 263, 293, 460, 652
PkrI	GCNGC	3 cut(s)	19, 227, 230
PleI	GAGTC	4 cut(s)	369, 871, 1059, 1077
PpsI	GAGTC	4 cut(s)	369, 871, 1059, 1077
PsiI	TTATAA	2 cut(s)	438, 1047
Psp124BI	GAGCTC	1 cut(s)	715
RsaI	GTAC	4 cut(s)	172, 469, 573, 992
RsaNI	GTAC	4 cut(s)	171, 468, 572, 991
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	715
SaqAI	TTAA	5 cut(s)	132, 339, 609, 629, 740
SatI	GCNGC	3 cut(s)	18, 226, 229
Sau3AI	GATC	2 cut(s)	249, 618
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	4 cut(s)	369, 872, 1060, 1078
SduI	GDGCHC	3 cut(s)	211, 715, 753
SfaNI	GCATC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	796
Sse9I	AATT	7 cut(s)	128, 198, 214, 309, 315, 637, 1026
SsiI	CCGC	1 cut(s)	302
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	1 cut(s)	797
SstI	GAGCTC	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	532
TaiI	ACGT	2 cut(s)	25, 1019
TaqI	TCGA	4 cut(s)	78, 330, 378, 593
TasI	AATT	7 cut(s)	128, 198, 214, 309, 315, 637, 1026
TatI	WGTACW	2 cut(s)	170, 990
TfiI	GAWTC	5 cut(s)	5, 263, 293, 460, 652
Tru1I	TTAA	5 cut(s)	132, 339, 609, 629, 740
Tru9I	TTAA	5 cut(s)	132, 339, 609, 629, 740
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	3 cut(s)	17, 225, 228
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	857, 969
XapI	RAATTY	3 cut(s)	309, 637, 1026
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	1 cut(s)	797
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.