Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

11528225 .. 11529525

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18092.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGATGCCAATGCATGGATCACCAAGCGTGCCTTACTTTCCACAAGATGTAGTCGCCAAAATACTTGCAGAACTTCCTATCAAATCCTTGTTGCGAGTGAGAGTTGTGTGCAAGTCATGGTGTTCCTTAGTCTCAAGTCAACAATTCGTCAAAAAGTATTCATCAAAAGTTACCACCAGTCCTTCAAGACTAATCATGAATTCGTTTGGCTTGGTTAACGATTTAACTTTCTGCCATCTTCATGATTCCATAGTAGTCCGTGAACGTTCAATCGATTTCGGGATCGAAAAATCCAACTATTGTGTCATGGGTTCTTGTGACGTGGAAGAAGGCAAAGTATGGCGATGGAAGTATGGATTTGGTCATGACTGCAATAGTGACGACTACAAGGTGGTTACATTGAGTCTTGAAGAAAAACCTCTCGATATGAAAGGGTACCGGTGGTGTAGTTATAAAACCATGATGTACTCATTAAGAACAGACTCCTGGAGGAGGATTGGGGATTCACCAATTGGTTATGTGTTTATCGACGAGTGTGCTGCTTTTGTAAGCGGAGCTCTACATTGGGTGGCGGATCGAAAACAAAGTGATACTAGGGTAATCATATCTCTTGATTTAACAACCGAGACATACATAGAATTTCCACAACCTGATTATGATTATATACTCGCGGAAGTGGGGGCTTCAAGAGGATGCTTATGCTTGCTTGCTTGCGACAATGATGAATATTTTGATATCTGGGTGATGAATGAATATGGGGTGCGAGAGTCTTGGACCAAATCGATCAAACTCCCATTTTTGTGGGGAGATAAAAATTGTCATGGCCGCTTAAAACCGCTGACATGGTTTACCGATGAGAAGGGGGAAATTATCTTGAGTATAGCCGGGAATGTGGCTTCCTACAATGCAAACAGAAACTCAGTTAGGTATCTTTCGACTCAAAATGATGATTATATATATCTCCCCCCTGGATATGTATTTTATGTAGAGAGCCTATTCTCACCCAATGCTTACAGTAGAGACAACAAGATTCGTCGACATCTCAGTATCAATATCGTACAAGAAAAAATAGTAGTGAAAGACACATGTGGAGCAACAGAAACCTGCTTCCCTTTGCAGATCCAGAATACCGATGATTCATTCAGCAGTATTACTAAGACAGGAACAGTTGCTCTTCCTGGTTGGATGTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

400

Amino Acids

45.73

Weight (kDa)

5.75

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 52	2.5e-09	F-box domain
F-box-like	PF12937	15 - 49	5.5e-07	F-box-like
FBA_3	PF08268	117 - 313	3e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
Acc36I	ACCTGC	1 cut(s)	1115
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	1039
AccII	CGCG	1 cut(s)	674
AciI	CCGC	5 cut(s)	555, 575, 674, 829, 839
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	4 cut(s)	28, 293, 585, 1117
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	202, 641
AfaI	GTAC	3 cut(s)	440, 470, 1062
AfiI	CCNNNNNNNGG	2 cut(s)	17, 495
AflIII	ACRYGT	1 cut(s)	1088
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	4 cut(s)	189, 273, 413, 690
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	488, 970, 1180
AluBI	AGCT	1 cut(s)	560
AluI	AGCT	1 cut(s)	560
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	3 cut(s)	139, 623, 1017
AlwI	GGATC	4 cut(s)	28, 293, 585, 1117
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	202, 641
AsiGI	ACCGGT	1 cut(s)	441
Asp718I	GGTACC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	777
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	4 cut(s)	15, 501, 757, 996
AvaII	GGWCC	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BanI	GGYRCC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	246, 342
BcgI	CGANNNNNNTGC	4 cut(s)	521, 524, 555, 558
BciT130I	CCWGG	3 cut(s)	490, 972, 1182
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	139, 623, 1017
BfaI	CTAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	1115
BisI	GCNGC	2 cut(s)	543, 829
BlsI	GCNGC	2 cut(s)	544, 830
Bme1390I	CCNGG	4 cut(s)	490, 889, 972, 1182
Bme18I	GGWCC	1 cut(s)	777
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	4 cut(s)	490, 889, 972, 1182
BmsI	GCATC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	511
BpuEI	CTTGAG	2 cut(s)	121, 898
BpuMI	CCSGG	1 cut(s)	889
Bsa29I	ATCGAT	2 cut(s)	276, 785
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 495
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	490, 972, 1182
BseCI	ATCGAT	2 cut(s)	276, 785
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	2 cut(s)	701, 1194
BseLI	CCNNNNNNNGG	2 cut(s)	17, 495
BseMII	CTCAG	2 cut(s)	936, 1060
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	674
BshFI	GGCC	1 cut(s)	828
BshNI	GGYRCC	1 cut(s)	438
BshTI	ACCGGT	1 cut(s)	441
BshVI	ATCGAT	2 cut(s)	276, 785
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	442, 888
BslI	CCNNNNNNNGG	2 cut(s)	17, 495
BsmAI	GTCTC	3 cut(s)	139, 623, 1017
BsnI	GGCC	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	20, 285, 577, 786, 1122
BspACI	CCGC	5 cut(s)	555, 575, 674, 829, 839
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	2 cut(s)	935, 1059
BspDI	ATCGAT	2 cut(s)	276, 785
BspFNI	CGCG	1 cut(s)	674
BspHI	TCATGA	3 cut(s)	198, 244, 367
BspLI	GGNNCC	1 cut(s)	440
BspMI	ACCTGC	1 cut(s)	1115
BspPI	GGATC	4 cut(s)	28, 293, 585, 1117
BspQI	GCTCTTC	1 cut(s)	1182
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	5 cut(s)	20, 285, 577, 786, 1122
Bst2UI	CCWGG	3 cut(s)	490, 972, 1182
Bst4CI	ACNGT	2 cut(s)	1019, 1171
Bst6I	CTCTTC	1 cut(s)	1182
BstC8I	GCNNGC	4 cut(s)	32, 707, 711, 715
BstDEI	CTNAG	4 cut(s)	130, 922, 1046, 1158
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	701, 1194
BstFNI	CGCG	1 cut(s)	674
BstKTI	GATC	5 cut(s)	23, 288, 580, 789, 1125
BstMAI	GTCTC	3 cut(s)	139, 623, 1017
BstMBI	GATC	5 cut(s)	20, 285, 577, 786, 1122
BstNI	CCWGG	3 cut(s)	490, 972, 1182
BstNSI	RCATGY	1 cut(s)	1092
BstSCI	CCNGG	4 cut(s)	488, 887, 970, 1180
BstUI	CGCG	1 cut(s)	674
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	1122
BstXI	CCANNNNNNTGG	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	1122
Bsu15I	ATCGAT	2 cut(s)	276, 785
BsuRI	GGCC	1 cut(s)	828
BsuTUI	ATCGAT	2 cut(s)	276, 785
BtgZI	GCGATG	1 cut(s)	361
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	701, 1194
BveI	ACCTGC	1 cut(s)	1115
Cac8I	GCNNGC	4 cut(s)	32, 707, 711, 715
CciI	TCATGA	3 cut(s)	198, 244, 367
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	777
ClaI	ATCGAT	2 cut(s)	276, 785
Csp6I	GTAC	3 cut(s)	439, 469, 1061
CspAI	ACCGGT	1 cut(s)	441
CviJI	RGCY	7 cut(s)	213, 560, 686, 828, 887, 899, 996
CviKI_1	RGCY	7 cut(s)	213, 560, 686, 828, 887, 899, 996
CviQI	GTAC	3 cut(s)	439, 469, 1061
DdeI	CTNAG	4 cut(s)	130, 922, 1046, 1158
DpnI	GATC	5 cut(s)	22, 287, 579, 788, 1124
DpnII	GATC	5 cut(s)	20, 285, 577, 786, 1122
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	1182
EarI	CTCTTC	1 cut(s)	1182
EciI	GGCGGA	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	3 cut(s)	488, 970, 1180
EcoRV	GATATC	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	562
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FblI	GTMKAC	1 cut(s)	1039
Fnu4HI	GCNGC	2 cut(s)	543, 829
FokI	GGATG	1 cut(s)	708
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	543, 829
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	2 cut(s)	543, 829
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	2 cut(s)	442, 888
HincII	GTYRAC	3 cut(s)	143, 220, 1040
HindII	GTYRAC	3 cut(s)	143, 220, 1040
HinfI	GANTC	8 cut(s)	248, 406, 485, 506, 770, 940, 1033, 1139
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	442, 888
HphI	GGTGA	4 cut(s)	15, 501, 757, 996
Hpy166II	GTNNAC	5 cut(s)	143, 220, 266, 852, 1040
Hpy8I	GTNNAC	5 cut(s)	143, 220, 266, 852, 1040
Hpy99I	CGWCG	2 cut(s)	536, 1041
HpyAV	CCTTC	3 cut(s)	195, 326, 856
HpyCH4III	ACNGT	2 cut(s)	1019, 1171
HpyCH4IV	ACGT	2 cut(s)	268, 324
HpyCH4V	TGCA	6 cut(s)	16, 71, 114, 375, 911, 1120
HpyF3I	CTNAG	4 cut(s)	130, 922, 1046, 1158
HpySE526I	ACGT	2 cut(s)	268, 324
KpnI	GGTACC	1 cut(s)	442
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	20, 285, 577, 786, 1122
LguI	GCTCTTC	1 cut(s)	1182
LmnI	GCTCC	2 cut(s)	557, 1094
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	268, 324
MaeIII	GTNAC	4 cut(s)	172, 320, 380, 397
MalI	GATC	5 cut(s)	22, 287, 579, 788, 1124
MboI	GATC	5 cut(s)	20, 285, 577, 786, 1122
MboII	GAAGA	4 cut(s)	233, 341, 425, 1169
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	1122
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	6 cut(s)	146, 202, 513, 641, 817, 870
MlyI	GAGTC	4 cut(s)	415, 479, 779, 934
MmeI	TCCRAC	2 cut(s)	321, 1166
MnlI	CCTC	4 cut(s)	432, 486, 489, 686
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	5 cut(s)	219, 227, 476, 620, 833
MslI	CAYNNNNRTG	2 cut(s)	243, 802
MspA1I	CMGCKG	1 cut(s)	841
MspI	CCGG	2 cut(s)	442, 888
MspR9I	CCNGG	4 cut(s)	490, 889, 972, 1182
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	3 cut(s)	490, 972, 1182
MvnI	CGCG	1 cut(s)	674
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	5 cut(s)	20, 285, 577, 786, 1122
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	320, 380
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	1092
PagI	TCATGA	3 cut(s)	198, 244, 367
PciI	ACATGT	1 cut(s)	1088
PciSI	GCTCTTC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	248, 506, 1033, 1139
PflMI	CCANNNNNTGG	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	488
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	544, 830
PleI	GAGTC	4 cut(s)	414, 479, 778, 934
PpsI	GAGTC	4 cut(s)	414, 479, 778, 934
PscI	ACATGT	1 cut(s)	1088
PsiI	TTATAA	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	562
Psp1406I	AACGTT	1 cut(s)	268
Psp6I	CCWGG	3 cut(s)	488, 970, 1180
PspGI	CCWGG	3 cut(s)	488, 970, 1180
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	1122
RsaI	GTAC	3 cut(s)	440, 470, 1062
RsaNI	GTAC	3 cut(s)	439, 469, 1061
RseI	CAYNNNNRTG	2 cut(s)	243, 802
SacI	GAGCTC	1 cut(s)	562
SalI	GTCGAC	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	1182
SaqAI	TTAA	5 cut(s)	219, 227, 476, 620, 833
SatI	GCNGC	2 cut(s)	543, 829
Sau3AI	GATC	5 cut(s)	20, 285, 577, 786, 1122
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	4 cut(s)	415, 479, 779, 934
ScrFI	CCNGG	4 cut(s)	490, 889, 972, 1182
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	8 cut(s)	271, 327, 396, 424, 562, 655, 932, 1109
SfaNI	GCATC	1 cut(s)	686
SinI	GGWCC	1 cut(s)	777
SmiMI	CAYNNNNRTG	2 cut(s)	243, 802
SmlI	CTYRAG	2 cut(s)	136, 877
SmoI	CTYRAG	2 cut(s)	136, 877
Sse9I	AATT	6 cut(s)	146, 202, 513, 641, 817, 870
SsiI	CCGC	5 cut(s)	555, 575, 674, 829, 839
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	4 cut(s)	488, 887, 970, 1180
TaaI	ACNGT	2 cut(s)	1019, 1171
TaiI	ACGT	2 cut(s)	271, 327
TaqI	TCGA	8 cut(s)	276, 288, 426, 531, 580, 785, 938, 1039
TasI	AATT	6 cut(s)	146, 202, 513, 641, 817, 870
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	831
TfiI	GAWTC	4 cut(s)	248, 506, 1033, 1139
Tru1I	TTAA	5 cut(s)	219, 227, 476, 620, 833
Tru9I	TTAA	5 cut(s)	219, 227, 476, 620, 833
TseFI	GTSAC	2 cut(s)	320, 380
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	320, 380
TspDTI	ATGAA	8 cut(s)	153, 215, 233, 446, 741, 764, 768, 1131
TspGWI	ACGGA	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	777
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	202, 641
XceI	RCATGY	1 cut(s)	1092
XmiI	GTMKAC	1 cut(s)	1039
XspI	CTAG	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.