Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013101.1

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

13431 .. 14633

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013101.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggattgttcgaaagaagcacgttttgacgaaaagccaacagagggattatcaatggcgcgtcacattccattcgaggtaatcactgaaatacttgcaaaacttcctgtgaaatccttgttgaaatttcgagttgtgtgcaagtcatggtgctccttaatctcaactagtcaattcgtcaaacaacatctatccagcaatactagtactcccaaaaaagtaatccagctgagtagtgatgtcttaacgttttactctctagtacatgattccaaactagtccaggaaaccatcaagttccggattgaatggcatgcactcagtcctttccgtatcatgggttattgtaatggtttggtatgcatagaagcttgtcgtgagaaccggatcttcctctggaatccaagtacaagagactccaaaatattaccacgtggagtggtagacaacagttatttttcttggtgcggatttggttatgactacaatagtgacgactacaaggtgctaacagtggatcgtcttaaaaaaccttttgataattaccaagactctagtagtaattctatgatgtacacattaagaacaaattcttggagaaggattcaggatttccctcttgaaattagttatataatggttgatagttctgctactcatgtaaatggagctctacattggatggcgaggaaaggattgaattcgtgggtaatcatctctcttgatttaactactgagacatacatggaagtgccgcaacctgatttttatgggactcctgttgagcatattggaattggggcctcaagcacagggtgcttatgcttaaatgttcacaacggtgctggttctcaaagttatgatttttgggtgatgaaggaatatggggtgcgagagtcttggactatatcgttcaaaatcccatacgtggttgtccgtatacacccaagaccggtggcatggttttcagaaaatgggaaaattttgttcagtagagatggaaaactggctacttacaacgcaaaaaaaaattcagttaggtatctgcatcaaacaacttattgtaattcatgtcctcatggtgctgtttatgttgagagcttagtatcacccaatgcttatagtaatcgtgaagccaaagaaattagccgtctcaataatatcaatgtagaaagaacgacaagagtagtgatgagtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

400

Amino Acids

45.87

Weight (kDa)

8.82

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	444, 940
AccII	CGCG	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	2 cut(s)	468, 755
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	2 cut(s)	395, 525
AcsI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
AcvI	CACGTG	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	816
AfaI	GTAC	4 cut(s)	208, 264, 409, 575
AfiI	CCNNNNNNNGG	4 cut(s)	44, 337, 928, 952
AgeI	ACCGGT	1 cut(s)	952
AgsI	TTSAA	5 cut(s)	124, 308, 623, 700, 916
AhlI	ACTAGT	3 cut(s)	167, 203, 277
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AleI	CACNNNNGTG	1 cut(s)	840
AluBI	AGCT	4 cut(s)	229, 371, 671, 1101
AluI	AGCT	4 cut(s)	229, 371, 671, 1101
Alw21I	GWGCWC	2 cut(s)	155, 673
Alw26I	GTCTC	3 cut(s)	408, 731, 1157
AlwI	GGATC	2 cut(s)	395, 525
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	1 cut(s)	801
ApoI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
AsiGI	ACCGGT	1 cut(s)	952
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	801
AsuHPI	GGTGA	2 cut(s)	883, 1101
AsuII	TTCGAA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	673
BbrPI	CACGTG	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	155, 673
BccI	CCATC	3 cut(s)	299, 676, 992
BceAI	ACGGC	1 cut(s)	1134
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	3 cut(s)	408, 731, 1157
BcuI	ACTAGT	3 cut(s)	167, 203, 277
BfaI	CTAG	5 cut(s)	168, 204, 260, 278, 555
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	1 cut(s)	802
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	1057
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	790
BsaAI	YACGTR	2 cut(s)	434, 928
BsaWI	WCCGGW	3 cut(s)	300, 384, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 337, 928, 952
Bse118I	RCCGGY	1 cut(s)	952
Bse1I	ACTGG	1 cut(s)	1011
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	687
BseLI	CCNNNNNNNGG	4 cut(s)	44, 337, 928, 952
BseMII	CTCAG	3 cut(s)	221, 334, 726
BseNI	ACTGG	1 cut(s)	1011
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	803
BshTI	ACCGGT	1 cut(s)	952
BsiHKAI	GWGCWC	2 cut(s)	155, 673
BsiSI	CCGG	3 cut(s)	301, 385, 953
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	4 cut(s)	44, 337, 928, 952
BsmAI	GTCTC	3 cut(s)	408, 731, 1157
BsmBI	CGTCTC	1 cut(s)	1157
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	155, 673
Bsp13I	TCCGGA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	387, 517
BspACI	CCGC	2 cut(s)	468, 755
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	222, 333, 727
BspEI	TCCGGA	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	802
BspPI	GGATC	2 cut(s)	395, 525
BspT104I	TTCGAA	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	952
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	1 cut(s)	952
BssMI	GATC	2 cut(s)	387, 517
BssNAI	GTATAC	1 cut(s)	941
Bst1107I	GTATAC	1 cut(s)	941
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	452, 514, 842
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	2 cut(s)	434, 928
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	230, 320, 735, 1102
BstF5I	GGATG	1 cut(s)	687
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	390, 520
BstMAI	GTCTC	3 cut(s)	408, 731, 1157
BstMBI	GATC	2 cut(s)	387, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BstZ17I	GTATAC	1 cut(s)	941
BsuRI	GGCC	1 cut(s)	803
BtsCI	GGATG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	84, 519
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	952
Cfr13I	GGNCC	1 cut(s)	801
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	4 cut(s)	207, 263, 408, 574
CspAI	ACCGGT	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviAII	CATG	9 cut(s)	147, 266, 314, 337, 659, 745, 960, 1071, 1079
CviJI	RGCY	9 cut(s)	37, 229, 371, 671, 803, 1010, 1101, 1136, 1149
CviKI_1	RGCY	9 cut(s)	37, 229, 371, 671, 803, 1010, 1101, 1136, 1149
CviQI	GTAC	4 cut(s)	207, 263, 408, 574
DdeI	CTNAG	4 cut(s)	230, 320, 735, 1102
DpnI	GATC	2 cut(s)	389, 519
DpnII	GATC	2 cut(s)	387, 517
DraIII	CACNNNGTG	1 cut(s)	816
Ecl136II	GAGCTC	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	671
Eco72I	CACGTG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	801
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	673
Esp3I	CGTCTC	1 cut(s)	1157
FaeI	CATG	9 cut(s)	150, 269, 317, 340, 662, 748, 963, 1074, 1082
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	9 cut(s)	146, 265, 313, 336, 658, 744, 959, 1070, 1078
FblI	GTMKAC	2 cut(s)	444, 940
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	1 cut(s)	694
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	5 cut(s)	168, 204, 260, 278, 555
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	3 cut(s)	301, 385, 953
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	9 cut(s)	150, 269, 317, 340, 662, 748, 963, 1074, 1082
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	7 cut(s)	269, 400, 416, 551, 604, 775, 896
HpaII	CCGG	3 cut(s)	301, 385, 953
HphI	GGTGA	2 cut(s)	883, 1101
Hpy166II	GTNNAC	4 cut(s)	445, 576, 835, 941
Hpy188I	TCNGA	1 cut(s)	970
Hpy188III	TCNNGA	7 cut(s)	301, 377, 397, 608, 620, 722, 1130
Hpy8I	GTNNAC	4 cut(s)	445, 576, 835, 941
HpyAV	CCTTC	2 cut(s)	594, 871
HpyCH4III	ACNGT	3 cut(s)	452, 514, 842
HpyCH4IV	ACGT	4 cut(s)	22, 248, 433, 927
HpyCH4V	TGCA	5 cut(s)	98, 141, 317, 363, 1048
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	4 cut(s)	230, 320, 735, 1102
HpySE526I	ACGT	4 cut(s)	22, 248, 433, 927
Hsp92II	CATG	9 cut(s)	150, 269, 317, 340, 662, 748, 963, 1074, 1082
HspAI	GCGC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	387, 517
LmnI	GCTCC	2 cut(s)	158, 668
LweI	GCATC	1 cut(s)	1057
MaeI	CTAG	5 cut(s)	168, 204, 260, 278, 555
MaeII	ACGT	4 cut(s)	22, 248, 433, 927
MaeIII	GTNAC	2 cut(s)	62, 491
MalI	GATC	2 cut(s)	389, 519
MboI	GATC	2 cut(s)	387, 517
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	155, 673
MlyI	GAGTC	4 cut(s)	410, 545, 769, 905
MnlI	CCTC	7 cut(s)	37, 70, 404, 627, 681, 814, 1086
Mph1103I	ATGCAT	1 cut(s)	365
MroI	TCCGGA	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	6 cut(s)	158, 245, 525, 581, 728, 827
MslI	CAYNNNNRTG	3 cut(s)	663, 749, 840
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	3 cut(s)	301, 385, 953
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	816
NdeII	GATC	2 cut(s)	387, 517
NlaIII	CATG	9 cut(s)	150, 269, 317, 340, 662, 748, 963, 1074, 1082
NlaIV	GGNNCC	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	62, 491
NsiI	ATGCAT	1 cut(s)	365
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	840
PaeI	GCATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	269, 400, 604
PfoI	TCCNGGA	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	952
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	4 cut(s)	410, 545, 769, 904
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	4 cut(s)	410, 545, 769, 904
Ppu21I	YACGTR	2 cut(s)	434, 928
Psp124BI	GAGCTC	1 cut(s)	673
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	282
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	4 cut(s)	208, 264, 409, 575
RsaNI	GTAC	4 cut(s)	207, 263, 408, 574
RseI	CAYNNNNRTG	3 cut(s)	663, 749, 840
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	6 cut(s)	158, 245, 525, 581, 728, 827
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	2 cut(s)	387, 517
Sau96I	GGNCC	1 cut(s)	801
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	4 cut(s)	410, 545, 769, 905
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	155, 673
SfaNI	GCATC	1 cut(s)	1057
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	663, 749, 840
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SpeI	ACTAGT	3 cut(s)	167, 203, 277
SphI	GCATGC	1 cut(s)	317
SsiI	CCGC	2 cut(s)	468, 755
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	5 cut(s)	168, 204, 260, 278, 555
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	452, 514, 842
TaiI	ACGT	4 cut(s)	25, 251, 436, 930
TaqI	TCGA	3 cut(s)	11, 75, 130
TatI	WGTACW	4 cut(s)	206, 262, 407, 573
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	269, 400, 604
Tru1I	TTAA	6 cut(s)	158, 245, 525, 581, 728, 827
Tru9I	TTAA	6 cut(s)	158, 245, 525, 581, 728, 827
TscAI	CASTG	2 cut(s)	91, 519
TseFI	GTSAC	2 cut(s)	62, 491
Tsp45I	GTSAC	2 cut(s)	62, 491
TspDTI	ATGAA	2 cut(s)	890, 1059
TspGWI	ACGGA	2 cut(s)	320, 926
TspRI	CASTG	2 cut(s)	91, 519
XapI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	444, 940
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	5 cut(s)	168, 204, 260, 278, 555
ZrmI	AGTACT	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.