Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

24126958 .. 24127922

Gene Structure 965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTTGTCGGAGAGGAGCACAAATGGAGAAGCCAATGCATGGATCAGCAATCGTGCCTTACCTTCCACTCGATGTAATCGCCGAAATACTTGCAAAACTTTCTGTCAAATCCTTGTTGCAATTTAGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAAGTCATCAATTTGTCAAAAAGTATTTGTCACAGGTCACCACCAGTCCTTCAAGACTAATCATGAATCCTTTTGGCTTGGTTAATGACTTGACTTTCTACCATCTTCATGATTCCATAGTAGTCTGTGAAAGTTCAATCGATTTCCGGATCGAAGAATCTGAGTACTGTGTCATGGGTTCTTGTGACGGTTTAGTATGTGTAAAAGAATGTCACCATGGTATGATCTTCCTCTGGAATCCAAGTACAAGATGCGCCAAAATATTACCTTGTACTTCCGAAGTAAATGGGAAAGTGTATGAACTTGGATGGAAGTATGGATTCGGTCACGACTGCAATAGTGACGACTACAAGGTGCTAACATTGAGTCCTGAAGAAAATACTCTTGATAAGATGGAGTACTTTAGTTATAAATCCATGATGTACACATTAGGAACAGACTCTTGGAGGAGGATTCGGGATTCACCACTTGGTTGTGTGTTTATCGACAAGTCTGCTACTTTTGTTTGTGGAGCTCTACATTGGATGGCGGATCAAGAACCAAGTCTTACTAGGTGCCACAACCTGATTATGAGTATTCTTCTGAACTTGCTGAAGTGGGGGCTTCAAGAGGATGCTTATGCTTGCTTGCTTACGACAATGATGAATATTATGATATTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

274

Amino Acids

31.14

Weight (kDa)

6.3

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	21 - 58	1.6e-07	F-box-like
F-box	PF00646	22 - 60	4.2e-11	F-box domain
FBA_3	PF08268	95 - 237	1.3e-13	F-box associated beta propeller domain
FBA_1	PF07734	98 - 240	3.3e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	3 cut(s)	52, 317, 699
AcuI	CTGAAG	2 cut(s)	552, 773
AfaI	GTAC	5 cut(s)	326, 406, 433, 560, 584
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	213, 297, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AluBI	AGCT	1 cut(s)	674
AluI	AGCT	1 cut(s)	674
Alw21I	GWGCWC	3 cut(s)	22, 152, 676
AlwI	GGATC	3 cut(s)	52, 317, 699
Aor13HI	TCCGGA	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	190, 365, 615
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	3 cut(s)	22, 152, 676
BccI	CCATC	4 cut(s)	270, 462, 547, 679
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 635, 669
BfaI	CTAG	1 cut(s)	711
BmcAI	AGTACT	2 cut(s)	326, 560
BmiI	GGNNCC	1 cut(s)	716
BmsI	GCATC	2 cut(s)	401, 763
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	3 cut(s)	473, 690, 778
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	30, 622
BshNI	GGYRCC	1 cut(s)	714
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	3 cut(s)	22, 152, 676
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	22, 152, 676
Bsp13I	TCCGGA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	44, 309, 384, 691
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	1 cut(s)	689
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	306
BspHI	TCATGA	2 cut(s)	222, 268
BspLI	GGNNCC	1 cut(s)	716
BspPI	GGATC	3 cut(s)	52, 317, 699
BspT107I	GGYRCC	1 cut(s)	714
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	4 cut(s)	44, 309, 384, 691
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	329, 350
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	784, 788
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	376
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	3 cut(s)	473, 690, 778
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	4 cut(s)	47, 312, 387, 694
BstMBI	GATC	4 cut(s)	44, 309, 384, 691
BstPI	GGTNACC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	473, 690, 778
Cac8I	GCNNGC	2 cut(s)	784, 788
CciI	TCATGA	2 cut(s)	222, 268
CfoI	GCGC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	5 cut(s)	325, 405, 432, 559, 583
CviAII	CATG	7 cut(s)	41, 144, 223, 269, 334, 377, 577
CviJI	RGCY	4 cut(s)	34, 237, 674, 763
CviKI_1	RGCY	4 cut(s)	34, 237, 674, 763
CviQI	GTAC	5 cut(s)	325, 405, 432, 559, 583
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	46, 311, 386, 693
DpnII	GATC	4 cut(s)	44, 309, 384, 691
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	552, 773
Eco91I	GGTNACC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
FatI	CATG	7 cut(s)	40, 143, 222, 268, 333, 376, 576
FokI	GGATG	3 cut(s)	480, 697, 785
FriOI	GRGCYC	1 cut(s)	676
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	415
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	9 cut(s)	226, 272, 317, 397, 480, 526, 599, 613, 620
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	3 cut(s)	190, 365, 615
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	4 cut(s)	12, 322, 439, 744
Hpy8I	GTNNAC	1 cut(s)	585
HpyAV	CCTTC	2 cut(s)	74, 219
HpyCH4III	ACNGT	2 cut(s)	329, 350
HpyCH4V	TGCA	5 cut(s)	40, 95, 121, 138, 495
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
HspAI	GCGC	1 cut(s)	414
Kpn2I	TCCGGA	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	44, 309, 384, 691
LmnI	GCTCC	3 cut(s)	17, 155, 671
LpnPI	CCDG	6 cut(s)	179, 217, 320, 379, 543, 737
LweI	GCATC	2 cut(s)	401, 763
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	6 cut(s)	189, 196, 344, 371, 485, 500
MalI	GATC	4 cut(s)	46, 311, 386, 693
MboI	GATC	4 cut(s)	44, 309, 384, 691
MboII	GAAGA	5 cut(s)	257, 326, 379, 545, 731
MhlI	GDGCHC	3 cut(s)	22, 152, 676
MluCI	AATT	2 cut(s)	122, 170
MlyI	GAGTC	2 cut(s)	535, 593
MnlI	CCTC	5 cut(s)	8, 401, 600, 603, 763
Mph1103I	ATGCAT	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	2 cut(s)	155, 243
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	4 cut(s)	44, 309, 384, 691
NlaIII	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
NlaIV	GGNNCC	1 cut(s)	716
NmuCI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
NsiI	ATGCAT	1 cut(s)	42
PagI	TCATGA	2 cut(s)	222, 268
PfeI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
PflMI	CCANNNNNTGG	1 cut(s)	41
PleI	GAGTC	2 cut(s)	534, 593
PpsI	GAGTC	2 cut(s)	534, 593
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	676
PspEI	GGTNACC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	716
RsaI	GTAC	5 cut(s)	326, 406, 433, 560, 584
RsaNI	GTAC	5 cut(s)	325, 405, 432, 559, 583
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	155, 243
Sau3AI	GATC	4 cut(s)	44, 309, 384, 691
ScaI	AGTACT	2 cut(s)	326, 560
SchI	GAGTC	2 cut(s)	535, 593
SduI	GDGCHC	3 cut(s)	22, 152, 676
SetI	ASST	7 cut(s)	66, 198, 430, 516, 676, 716, 726
SfaNI	GCATC	2 cut(s)	401, 763
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	122, 170
SsiI	CCGC	1 cut(s)	689
SspI	AATATT	2 cut(s)	423, 808
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	329, 350
TaqI	TCGA	4 cut(s)	72, 300, 312, 645
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	2 cut(s)	122, 170
TatI	WGTACW	5 cut(s)	324, 404, 431, 558, 582
TfiI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
Tru1I	TTAA	2 cut(s)	155, 243
Tru9I	TTAA	2 cut(s)	155, 243
TseFI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
Tsp45I	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
TspDTI	ATGAA	4 cut(s)	239, 257, 474, 818
Van91I	CCANNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	711
ZrmI	AGTACT	2 cut(s)	326, 560
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.