Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

72776785 .. 72777785

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTGGGTGATGAAGGAATATGGGGTGAGTAAAATTGAAGCTACATGTGAAGTGCTTGGGGCTTCAAGAGGGTGCTTGTGTATACTTTTCCAGAACACGTCCTATCATCGGCGTGAGATGTGGGTGATGAAGGAATATGGGGTGAGTAAAATTGAAGCTACATGTGAAGTGCTTGGGGCTTCAAGAGGGTGCTTGTGTATACTTTTCCAGAACACGTCCTATCATCGGCGTGAGATGTGGGTGATGAAGGAATATGGGGTGAGAGAGTCTTGGACCAAATCAGTCACCATCCCGTTTTGTGTGTTGGACAATACTTATAAATTTAAACCACTGACATCGTTTTCCGGTAACGGCGAAATTCTGCTGAATTCACAGAAGGGTTTTGTTACTTATGATGTAGAGAAAAATTCAATTAGAGAGCTCACTAGTCATGAGGGTAATTTCAATCTGCATGATGATCATGCCTATGTAGGGAGCCTCGTGTCGCCCAATGCTTATGCTTATCACAAGCTTGGAGCCAAAAAGGCTCGACTTTCAAACATGTCATGCTTTTTCTTTCCTATAATTAGTTTTTTTCGGTTTTTATTGACTCTCTTTTTTCTTGTGATGGGAGTTCGAACTTTTGGACATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

211

Amino Acids

24.25

Weight (kDa)

8.87

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	82, 199
AcsI	RAATTY	4 cut(s)	320, 357, 367, 406
AfiI	CCNNNNNNNGG	3 cut(s)	108, 225, 471
AflIII	ACRYGT	5 cut(s)	44, 96, 161, 213, 540
AgsI	TTSAA	7 cut(s)	38, 66, 155, 183, 411, 445, 537
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	2 cut(s)	99, 216
AluBI	AGCT	4 cut(s)	41, 158, 421, 511
AluI	AGCT	4 cut(s)	41, 158, 421, 511
Alw21I	GWGCWC	1 cut(s)	423
ApoI	RAATTY	4 cut(s)	320, 357, 367, 406
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	7 cut(s)	19, 37, 136, 154, 253, 271, 277
AsuII	TTCGAA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	2 cut(s)	296, 601
BceAI	ACGGC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	2 cut(s)	99, 216
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	476, 517
Bpu14I	TTCGAA	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 225, 471
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	108, 225, 471
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	108, 225, 471
Bsp119I	TTCGAA	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	476, 517
BspT104I	TTCGAA	1 cut(s)	616
BssMI	GATC	1 cut(s)	457
BssNAI	GTATAC	2 cut(s)	83, 200
BssSI	CACGAG	1 cut(s)	479
Bst1107I	GTATAC	2 cut(s)	83, 200
Bst2BI	CACGAG	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNSI	RCATGY	4 cut(s)	48, 165, 544, 632
BstZ17I	GTATAC	2 cut(s)	83, 200
BtrI	CACGTC	2 cut(s)	99, 216
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	273
CviAII	CATG	8 cut(s)	45, 162, 431, 452, 461, 541, 546, 629
CviJI	RGCY	9 cut(s)	41, 62, 158, 179, 421, 477, 511, 518, 527
CviKI_1	RGCY	9 cut(s)	41, 62, 158, 179, 421, 477, 511, 518, 527
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	8 cut(s)	48, 165, 434, 455, 464, 544, 549, 632
FatI	CATG	8 cut(s)	44, 161, 430, 451, 460, 540, 545, 628
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	82, 199
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	426
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	8 cut(s)	48, 165, 434, 455, 464, 544, 549, 632
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	266, 589
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	7 cut(s)	19, 37, 136, 154, 253, 271, 277
Hpy166II	GTNNAC	2 cut(s)	83, 200
Hpy188III	TCNNGA	5 cut(s)	66, 91, 183, 208, 431
Hpy8I	GTNNAC	2 cut(s)	83, 200
HpyAV	CCTTC	4 cut(s)	7, 124, 241, 370
HpyCH4IV	ACGT	2 cut(s)	98, 215
HpyCH4V	TGCA	2 cut(s)	451, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpySE526I	ACGT	2 cut(s)	98, 215
Hsp92II	CATG	8 cut(s)	48, 165, 434, 455, 464, 544, 549, 632
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	474, 515
LpnPI	CCDG	3 cut(s)	104, 221, 358
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	98, 215
MaeIII	GTNAC	3 cut(s)	283, 347, 385
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	9 cut(s)	33, 150, 320, 357, 367, 406, 411, 439, 564
MlyI	GAGTC	2 cut(s)	275, 583
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	62, 179, 427, 488
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	3 cut(s)	111, 228, 465
MspI	CCGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	524
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	8 cut(s)	48, 165, 434, 455, 464, 544, 549, 632
NlaIV	GGNNCC	2 cut(s)	476, 517
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	4 cut(s)	48, 165, 544, 632
NspV	TTCGAA	1 cut(s)	616
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	3 cut(s)	44, 161, 540
PleI	GAGTC	2 cut(s)	274, 583
PpsI	GAGTC	2 cut(s)	274, 583
PscI	ACATGT	3 cut(s)	44, 161, 540
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	476, 517
PspPI	GGNCC	1 cut(s)	273
RseI	CAYNNNNRTG	3 cut(s)	111, 228, 465
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	275, 583
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	6 cut(s)	43, 101, 160, 218, 423, 513
SfuI	TTCGAA	1 cut(s)	616
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	3 cut(s)	111, 228, 465
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	9 cut(s)	33, 150, 320, 357, 367, 406, 411, 439, 564
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	423
TaiI	ACGT	2 cut(s)	101, 218
TaqI	TCGA	2 cut(s)	529, 616
TasI	AATT	9 cut(s)	33, 150, 320, 357, 367, 406, 411, 439, 564
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	26, 143, 260
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	4 cut(s)	320, 357, 367, 406
XceI	RCATGY	4 cut(s)	48, 165, 544, 632
XmiI	GTMKAC	2 cut(s)	82, 199
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.