Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

1922164 .. 1923530

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG027400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGATATATGGATTTGGTTACGACTACATAGTGACGACTTCAAGGTGCTAATATTGCTTCCCTACAGATCTATCTTACATGGTTACAATGGATTTAGTTATAGATCCATAATTTACACATTACGATCGAATTCTTGGAGGAGGATTCAGGACTCTCCTCTTGGTATCTTGTTTACTATTAAGCATTCTGCTTTTGCTAGTGGAGCTCTACATTGGAGTGCTGCAAAAACTGACTGCATTGGAGCAATTGTTTTGTTTGATTTAACAAGTGAGACATACAAGGAACTGCCACTACCACATCCTGATATTCGGTGTTATAAACTAGAAGCGGGGGCTTCAATAGGTAAGCTACTTGCTAGAGAAGACGATGATAGAGGTTATTATATTTGGGTGATGAAGGAGTATGGGGTGCTAGAGTCTTGGACCAAAACGGTCAAAATTCCAAGGATGCGGGGCACTTTAGGGCGTATCATCTTACAACCGATGACATGGATTATGGAAAATGGGGAAATTCTGTTGTATGCAAGTGGGAATCCGGTTTCCTACAATGCAAATAAAAATTCACTTGTGTATTTTGCTAGGGATGATATAATTGACAGTTATCATCCTTGTTGTGTTGAATATGTAGAGAGCTTAGTCTCACCCAATGCTTACAACCTTGGAGTGAACAAAAATTTTCGTCTCAAGATCGAAATTGTACTGAGAAAAGTAGTGAACTATAGTGACGGATCCAGGAAGTTTGTCCAGAGTGACTTATGGAATGCCTGGACTTCTATATATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

261

Amino Acids

30.14

Weight (kDa)

8.74

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	12 - 214	2.8e-12	F-box associated beta propeller domain
FBA_3	PF08268	12 - 176	3.4e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	2 cut(s)	329, 451
AclWI	GGATC	3 cut(s)	99, 723, 736
AcsI	RAATTY	5 cut(s)	130, 438, 510, 559, 673
AfaI	GTAC	1 cut(s)	699
AgsI	TTSAA	3 cut(s)	43, 339, 620
AjnI	CCWGG	2 cut(s)	731, 764
AluBI	AGCT	4 cut(s)	206, 349, 633, 783
AluI	AGCT	4 cut(s)	206, 349, 633, 783
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	3 cut(s)	266, 643, 686
AlwI	GGATC	3 cut(s)	99, 723, 736
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	5 cut(s)	130, 438, 510, 559, 673
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	403, 633
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	733, 766
BcoDI	GTCTC	3 cut(s)	266, 643, 686
BfaI	CTAG	5 cut(s)	198, 323, 357, 413, 579
BfmI	CTRYAG	2 cut(s)	64, 718
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	733, 766
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	2 cut(s)	733, 766
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	443, 658
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
BseBI	CCWGG	2 cut(s)	733, 766
BseDI	CCNNGG	2 cut(s)	443, 658
BseGI	GGATG	4 cut(s)	298, 453, 589, 604
BseMII	CTCAG	1 cut(s)	692
BseRI	GAGGAG	2 cut(s)	147, 154
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	536
BsmAI	GTCTC	3 cut(s)	266, 643, 686
BsmBI	CGTCTC	1 cut(s)	686
BsmI	GAATGC	2 cut(s)	184, 766
Bsp1286I	GDGCHC	2 cut(s)	208, 458
Bsp143I	GATC	5 cut(s)	68, 104, 125, 687, 728
BspACI	CCGC	2 cut(s)	329, 451
BspCNI	CTCAG	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	730
BspPI	GGATC	3 cut(s)	99, 723, 736
BssECI	CCNNGG	2 cut(s)	443, 658
BssMI	GATC	5 cut(s)	68, 104, 125, 687, 728
BssT1I	CCWWGG	2 cut(s)	443, 658
Bst2UI	CCWGG	2 cut(s)	733, 766
Bst4CI	ACNGT	2 cut(s)	433, 599
BstDEI	CTNAG	2 cut(s)	634, 701
BstF5I	GGATG	4 cut(s)	298, 453, 589, 604
BstKTI	GATC	5 cut(s)	71, 107, 128, 690, 731
BstMAI	GTCTC	3 cut(s)	266, 643, 686
BstMBI	GATC	5 cut(s)	68, 104, 125, 687, 728
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 203
BstNI	CCWGG	2 cut(s)	733, 766
BstSCI	CCNGG	2 cut(s)	731, 764
BstSFI	CTRYAG	2 cut(s)	64, 718
BstSLI	GKGCMC	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	3 cut(s)	68, 104, 728
BstYI	RGATCY	3 cut(s)	68, 104, 728
BtsCI	GGATG	4 cut(s)	298, 453, 589, 604
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	2 cut(s)	80, 489
CviJI	RGCY	5 cut(s)	206, 335, 349, 633, 783
CviKI_1	RGCY	5 cut(s)	206, 335, 349, 633, 783
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	2 cut(s)	634, 701
DpnI	GATC	5 cut(s)	70, 106, 127, 689, 730
DpnII	GATC	5 cut(s)	68, 104, 125, 687, 728
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	443, 658
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	731, 764
EcoT14I	CCWWGG	2 cut(s)	443, 658
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	443, 658
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	2 cut(s)	83, 492
FatI	CATG	2 cut(s)	79, 488
FauI	CCCGC	2 cut(s)	322, 444
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	4 cut(s)	285, 460, 591, 596
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	5 cut(s)	198, 323, 357, 413, 579
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	2 cut(s)	83, 492
HinfI	GANTC	4 cut(s)	145, 152, 416, 532
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	403, 633
Hpy166II	GTNNAC	3 cut(s)	174, 667, 715
Hpy188III	TCNNGA	4 cut(s)	149, 302, 685, 745
Hpy8I	GTNNAC	3 cut(s)	174, 667, 715
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	433, 599
HpyCH4V	TGCA	4 cut(s)	224, 237, 524, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 203
HpyF3I	CTNAG	2 cut(s)	634, 701
Hsp92II	CATG	2 cut(s)	83, 492
Kzo9I	GATC	5 cut(s)	68, 104, 125, 687, 728
LmnI	GCTCC	2 cut(s)	203, 242
LpnPI	CCDG	8 cut(s)	134, 315, 549, 718, 745, 751, 758, 778
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	5 cut(s)	198, 323, 357, 413, 579
MaeIII	GTNAC	5 cut(s)	18, 32, 83, 722, 749
MalI	GATC	5 cut(s)	70, 106, 127, 689, 730
MboI	GATC	5 cut(s)	68, 104, 125, 687, 728
MboII	GAAGA	1 cut(s)	374
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	3 cut(s)	68, 104, 728
MhlI	GDGCHC	2 cut(s)	208, 458
MluCI	AATT	9 cut(s)	111, 130, 246, 438, 510, 559, 591, 673, 693
MlyI	GAGTC	2 cut(s)	146, 425
MnlI	CCTC	4 cut(s)	132, 135, 168, 368
MseI	TTAA	2 cut(s)	180, 263
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	2 cut(s)	733, 766
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	2 cut(s)	184, 766
MvaI	CCWGG	2 cut(s)	733, 766
MwoI	GCNNNNNNNGC	2 cut(s)	55, 203
NdeII	GATC	5 cut(s)	68, 104, 125, 687, 728
NlaIII	CATG	2 cut(s)	83, 492
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	3 cut(s)	32, 722, 749
PctI	GAATGC	2 cut(s)	184, 766
PfeI	GAWTC	2 cut(s)	145, 532
PfoI	TCCNGGA	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	2 cut(s)	146, 424
PpsI	GAGTC	2 cut(s)	146, 424
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	731, 764
PspGI	CCWGG	2 cut(s)	731, 764
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	423
PsrI	GAACNNNNNNTAC	2 cut(s)	276, 308
PsuI	RGATCY	3 cut(s)	68, 104, 728
PvuI	CGATCG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	180, 263
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	5 cut(s)	68, 104, 125, 687, 728
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	2 cut(s)	146, 425
ScrFI	CCNGG	2 cut(s)	733, 766
SduI	GDGCHC	2 cut(s)	208, 458
SetI	ASST	8 cut(s)	48, 208, 346, 351, 379, 635, 660, 785
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	64, 718
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	9 cut(s)	111, 130, 246, 438, 510, 559, 591, 673, 693
SsiI	CCGC	2 cut(s)	329, 451
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	5 cut(s)	198, 323, 357, 413, 579
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	731, 764
StyI	CCWWGG	2 cut(s)	443, 658
TaaI	ACNGT	2 cut(s)	433, 599
TaqI	TCGA	2 cut(s)	128, 690
TasI	AATT	9 cut(s)	111, 130, 246, 438, 510, 559, 591, 673, 693
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	145, 532
Tru1I	TTAA	2 cut(s)	180, 263
Tru9I	TTAA	2 cut(s)	180, 263
TseFI	GTSAC	3 cut(s)	32, 722, 749
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	3 cut(s)	32, 722, 749
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	5 cut(s)	130, 438, 510, 559, 673
XspI	CTAG	5 cut(s)	198, 323, 357, 413, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.