Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

24015878 .. 24016765

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTTGTCGGAGAGGAGCACAAATGGAGAAGCCAATGCATGGATCAGCAATCGTGCCTTACCTTCCACTCGATGTAATCACCGAAATACTTGCAAAACTTTCTGTCAAATCCTTGTTGCAATTTAGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAAGTCATCAATTTGTCAAAAAGTATTTGTCACAAGTCACCACCAGTCCTTCAAGACTAATCATGAATCCTTTTGGCTTGGTTAACGACTTGACTTTCTACCATCTTCATGATTCCATAGTAGTCTGTGAAAGTTCAATCGATTTCCGGATCGAAGAATCTGAGTACTGTGTCATGGGTTCTTGTGACGGTTTAGTATGTGTAAAAGAATGTCACCATGGTATGATCTTCCTCTGGAATCCAAGTACAAGATGCGCCAAAATATTACCTTGTACTTCCGAAGTACAAGGGAAAGTGTATGAACTTGGATGGAAGTATGGATTCGGTCACGACTGCAATAGTGACGACTACAAGGTGCTAACATTGAGTCCTGAAGAAAATACTCTTGATAAGATGGAGTACTTTAGTTATAAATCCATGATGTACACATTAGGAACAGACTCTTGCAGGAGGATTCGGGATTCAGCACTTGGTTGTGTGTTTATCGACAAGTCTGCTACTTTTGTAAGTGGAGCTCTACATTGGATGGCGGATCAAGAACCAAGTTTTACTAGGGTAATTATTTCTCTTGATTTAACAAGTGAGACTAGGGTAATTATTTCTGTTGATTTAACAAGTCTCATAGAAGTGCCACAACCTGATTATGAGTATTCTTCTGAACTTGCTGAAGTGGGGGCTTCAAGAGTCTTGGACCAAATCGATCAAAATCCCATTTATGTGGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

295

Amino Acids

33.26

Weight (kDa)

5.39

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	21 - 58	1.7e-07	F-box-like
F-box	PF00646	22 - 60	4.2e-11	F-box domain
FBA_3	PF08268	95 - 256	1.6e-15	F-box associated beta propeller domain
FBA_1	PF07734	98 - 250	1.9e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	3 cut(s)	52, 317, 699
AcuI	CTGAAG	2 cut(s)	552, 846
AfaI	GTAC	6 cut(s)	326, 406, 433, 444, 560, 584
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	213, 297, 840
AluBI	AGCT	1 cut(s)	674
AluI	AGCT	1 cut(s)	674
Alw21I	GWGCWC	3 cut(s)	22, 152, 676
Alw26I	GTCTC	2 cut(s)	737, 782
AlwI	GGATC	3 cut(s)	52, 317, 699
Aor13HI	TCCGGA	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	850
AsuHPI	GGTGA	3 cut(s)	73, 190, 365
AvaII	GGWCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	3 cut(s)	22, 152, 676
BccI	CCATC	4 cut(s)	270, 462, 547, 679
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 635, 669
BcoDI	GTCTC	2 cut(s)	737, 782
BfaI	CTAG	2 cut(s)	711, 747
BmcAI	AGTACT	2 cut(s)	326, 560
Bme18I	GGWCC	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	850
BmsI	GCATC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	300, 858
BsaBI	GATNNNNATC	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	864
BseAI	TCCGGA	1 cut(s)	306
BseCI	ATCGAT	2 cut(s)	300, 858
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	2 cut(s)	473, 690
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	30
BshVI	ATCGAT	2 cut(s)	300, 858
BsiHKAI	GWGCWC	3 cut(s)	22, 152, 676
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	737, 782
Bsp1286I	GDGCHC	3 cut(s)	22, 152, 676
Bsp13I	TCCGGA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	44, 309, 384, 691, 859
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	1 cut(s)	689
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	2 cut(s)	300, 858
BspEI	TCCGGA	1 cut(s)	306
BspHI	TCATGA	2 cut(s)	222, 268
BspPI	GGATC	3 cut(s)	52, 317, 699
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	5 cut(s)	44, 309, 384, 691, 859
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	329, 350
BstAUI	TGTACA	1 cut(s)	582
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	473, 690
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	5 cut(s)	47, 312, 387, 694, 862
BstMAI	GTCTC	2 cut(s)	737, 782
BstMBI	GATC	5 cut(s)	44, 309, 384, 691, 859
BstXI	CCANNNNNNTGG	1 cut(s)	877
Bsu15I	ATCGAT	2 cut(s)	300, 858
BsuTUI	ATCGAT	2 cut(s)	300, 858
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	473, 690
CciI	TCATGA	2 cut(s)	222, 268
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	850
ClaI	ATCGAT	2 cut(s)	300, 858
Csp6I	GTAC	6 cut(s)	325, 405, 432, 443, 559, 583
CviAII	CATG	7 cut(s)	41, 144, 223, 269, 334, 377, 577
CviJI	RGCY	4 cut(s)	34, 237, 674, 836
CviKI_1	RGCY	4 cut(s)	34, 237, 674, 836
CviQI	GTAC	6 cut(s)	325, 405, 432, 443, 559, 583
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	5 cut(s)	46, 311, 386, 693, 861
DpnII	GATC	5 cut(s)	44, 309, 384, 691, 859
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	850
Eco53kI	GAGCTC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	552, 846
EcoICRI	GAGCTC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
FatI	CATG	7 cut(s)	40, 143, 222, 268, 333, 376, 576
FokI	GGATG	2 cut(s)	480, 697
FriOI	GRGCYC	1 cut(s)	676
FspBI	CTAG	2 cut(s)	711, 747
GlaI	GCGC	1 cut(s)	415
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	3 cut(s)	73, 190, 365
Hpy166II	GTNNAC	2 cut(s)	244, 585
Hpy188I	TCNGA	4 cut(s)	12, 322, 439, 817
Hpy8I	GTNNAC	2 cut(s)	244, 585
HpyAV	CCTTC	2 cut(s)	74, 219
HpyCH4III	ACNGT	2 cut(s)	329, 350
HpyCH4V	TGCA	6 cut(s)	40, 95, 121, 138, 495, 606
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
HspAI	GCGC	1 cut(s)	414
Kpn2I	TCCGGA	1 cut(s)	306
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	44, 309, 384, 691, 859
LmnI	GCTCC	3 cut(s)	17, 155, 671
LpnPI	CCDG	6 cut(s)	217, 320, 379, 543, 592, 810
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	2 cut(s)	711, 747
MaeIII	GTNAC	6 cut(s)	189, 196, 344, 371, 485, 500
MalI	GATC	5 cut(s)	46, 311, 386, 693, 861
MboI	GATC	5 cut(s)	44, 309, 384, 691, 859
MboII	GAAGA	5 cut(s)	257, 326, 379, 545, 804
MhlI	GDGCHC	3 cut(s)	22, 152, 676
MluCI	AATT	4 cut(s)	122, 170, 717, 753
MlyI	GAGTC	3 cut(s)	535, 593, 852
MnlI	CCTC	3 cut(s)	8, 401, 603
Mph1103I	ATGCAT	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	4 cut(s)	155, 243, 734, 770
MslI	CAYNNNNRTG	3 cut(s)	267, 785, 875
MspI	CCGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	44, 309, 384, 691, 859
NlaIII	CATG	7 cut(s)	44, 147, 226, 272, 337, 380, 580
NmuCI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
NsiI	ATGCAT	1 cut(s)	42
PagI	TCATGA	2 cut(s)	222, 268
PfeI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
PflMI	CCANNNNNTGG	1 cut(s)	41
PleI	GAGTC	3 cut(s)	534, 593, 851
PpsI	GAGTC	3 cut(s)	534, 593, 851
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	850
RsaI	GTAC	6 cut(s)	326, 406, 433, 444, 560, 584
RsaNI	GTAC	6 cut(s)	325, 405, 432, 443, 559, 583
RseI	CAYNNNNRTG	3 cut(s)	267, 785, 875
SacI	GAGCTC	1 cut(s)	676
SaqAI	TTAA	4 cut(s)	155, 243, 734, 770
Sau3AI	GATC	5 cut(s)	44, 309, 384, 691, 859
Sau96I	GGNCC	1 cut(s)	850
ScaI	AGTACT	2 cut(s)	326, 560
SchI	GAGTC	3 cut(s)	535, 593, 852
SduI	GDGCHC	3 cut(s)	22, 152, 676
SetI	ASST	5 cut(s)	66, 430, 516, 676, 799
SfaNI	GCATC	1 cut(s)	401
SinI	GGWCC	1 cut(s)	850
SmiMI	CAYNNNNRTG	3 cut(s)	267, 785, 875
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	4 cut(s)	122, 170, 717, 753
SsiI	CCGC	1 cut(s)	689
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	711, 747
SstI	GAGCTC	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	329, 350
TaqI	TCGA	5 cut(s)	72, 300, 312, 645, 858
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	4 cut(s)	122, 170, 717, 753
TatI	WGTACW	6 cut(s)	324, 404, 431, 442, 558, 582
TfiI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
Tru1I	TTAA	4 cut(s)	155, 243, 734, 770
Tru9I	TTAA	4 cut(s)	155, 243, 734, 770
TseFI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
Tsp45I	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
TspDTI	ATGAA	3 cut(s)	239, 257, 474
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	850
XspI	CTAG	2 cut(s)	711, 747
ZrmI	AGTACT	2 cut(s)	326, 560
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.