Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

70103566 .. 70104792

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGCCTCACATTCCATTCGAGGTAATCACTGAAATACTTGCTAAACTTCCTGTGAAATCCTTGTTGAAATTTCGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAACTAGGCAATTCGTCAAAAAACATCTATCAAGTAATACTAGGATCCCCCAAAAAAATAATCCAGCTGAAACTCTTGATGCTACTTGTAGCATGGTTGATATGTCTGCTACTCTTGTAAATGGGGCTCTACATTGGATGGCGAGGCAAGGATCAAATAATTCGTGGGTAATACTTGCTCTTGATTTAACTACTGAGACATACATGGATGTGCCGCAACCTGATTTTTATGGGACTCCTGTTGAGCATACTGGAATTGGGGCCTCAAGCACAGGGTGCTTATGCTTAAATGTTTACAACGGTGTTGGTCGTCGAAGTTATGATTTTTGGGTGATGAAGGAGTATGGGGTGCAAGAGTCTTGGACTATTTCGCTCAAAATCCTATACATGGTTGACGATGTATGTGTCGATGGCCTAAGACCGGTGACATGGTATTCTGAAAATGGGAAAATTTTGTTCAATAGAGATCGGAAACGGGCTACTTACAACGCGAACAAAAATTCAGTTAGGTATCTGCGTCCAACAACTAGTACTTATTATTCATGTCCTCATGGTGACGTTTATGTTGAGAGCTTAGTTTCACCCAGTGCTTACAGTAACCGTGAAGCCAAAGAAATTAGCCGCCTCAGTATCAATGTAGGAAGAACAAGAAGACGAGTGATGAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

259

Amino Acids

29.37

Weight (kDa)

9.21

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 43	2.2e-10	F-box domain
F-box-like	PF12937	4 - 40	3.3e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	599
AciI	CCGC	2 cut(s)	323, 730
AclWI	GGATC	3 cut(s)	148, 161, 268
AcsI	RAATTY	3 cut(s)	71, 558, 607
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	2 cut(s)	384, 695
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	2 cut(s)	496, 529
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	70, 568
AhlI	ACTAGT	1 cut(s)	635
AluBI	AGCT	2 cut(s)	176, 681
AluI	AGCT	2 cut(s)	176, 681
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	148, 161, 268
AoxI	GGCC	2 cut(s)	369, 520
ApoI	RAATTY	3 cut(s)	71, 558, 607
AsiGI	ACCGGT	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	4 cut(s)	451, 544, 674, 681
BamHI	GGATCC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	2 cut(s)	241, 512
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	1 cut(s)	299
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	3 cut(s)	114, 150, 636
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	323, 730
BlsI	GCNGC	2 cut(s)	324, 731
BmcAI	AGTACT	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	6, 155, 370
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 529
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	364, 693
BseGI	GGATG	2 cut(s)	252, 322
BseLI	CCNNNNNNNGG	2 cut(s)	496, 529
BseMII	CTCAG	2 cut(s)	294, 748
BseNI	ACTGG	2 cut(s)	364, 693
Bsh1236I	CGCG	1 cut(s)	599
BshFI	GGCC	2 cut(s)	371, 522
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	496, 529
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	371, 522
Bsp1286I	GDGCHC	2 cut(s)	101, 238
Bsp143I	GATC	3 cut(s)	153, 260, 574
BspACI	CCGC	2 cut(s)	323, 730
BspANI	GGCC	2 cut(s)	371, 522
BspCNI	CTCAG	2 cut(s)	295, 747
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	3 cut(s)	6, 155, 370
BspPI	GGATC	3 cut(s)	148, 161, 268
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	364, 693
BssAI	RCCGGY	1 cut(s)	529
BssMI	GATC	3 cut(s)	153, 260, 574
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	410, 704, 710
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	303, 524, 682, 734
BstF5I	GGATG	2 cut(s)	252, 322
BstFNI	CGCG	1 cut(s)	599
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	156, 263, 577
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	153, 260, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	371, 522
BtsCI	GGATG	2 cut(s)	252, 322
BtsIMutI	CAGTG	2 cut(s)	30, 700
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	639
CspAI	ACCGGT	1 cut(s)	529
CviAII	CATG	7 cut(s)	93, 202, 313, 496, 537, 651, 659
CviJI	RGCY	8 cut(s)	176, 236, 371, 522, 587, 681, 716, 729
CviKI_1	RGCY	8 cut(s)	176, 236, 371, 522, 587, 681, 716, 729
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	4 cut(s)	303, 524, 682, 734
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	155, 262, 576
DpnII	GATC	3 cut(s)	153, 260, 574
DraIII	CACNNNGTG	2 cut(s)	384, 695
Eco24I	GRGCYC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	238
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	7 cut(s)	96, 205, 316, 499, 540, 654, 662
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	7 cut(s)	92, 201, 312, 495, 536, 650, 658
Fnu4HI	GCNGC	2 cut(s)	323, 730
FokI	GGATG	2 cut(s)	259, 329
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	323, 730
FspBI	CTAG	3 cut(s)	114, 150, 636
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	323, 730
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	371, 522
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	96, 205, 316, 499, 540, 654, 662
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	343, 464
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	4 cut(s)	451, 544, 674, 681
Hpy166II	GTNNAC	2 cut(s)	403, 502
Hpy188I	TCNGA	2 cut(s)	547, 579
Hpy188III	TCNNGA	2 cut(s)	185, 290
Hpy8I	GTNNAC	2 cut(s)	403, 502
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	3 cut(s)	410, 704, 710
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	2 cut(s)	87, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	4 cut(s)	303, 524, 682, 734
HpySE526I	ACGT	1 cut(s)	666
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	96, 205, 316, 499, 540, 654, 662
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	153, 260, 574
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	66, 186, 342, 345, 360, 366, 543, 706
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	3 cut(s)	114, 150, 636
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	532, 662, 704
MalI	GATC	3 cut(s)	155, 262, 576
MboI	GATC	3 cut(s)	153, 260, 574
MboII	GAAGA	2 cut(s)	762, 771
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	101, 238
MluCI	AATT	7 cut(s)	71, 119, 268, 363, 558, 607, 723
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	337, 473
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	6 cut(s)	16, 18, 246, 382, 666, 743
MseI	TTAA	3 cut(s)	104, 296, 395
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	384
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	153, 260, 574
NlaIII	CATG	7 cut(s)	96, 205, 316, 499, 540, 654, 662
NlaIV	GGNNCC	3 cut(s)	6, 155, 370
NmuCI	GTSAC	2 cut(s)	532, 662
PinAI	ACCGGT	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	324, 731
PleI	GAGTC	2 cut(s)	337, 472
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	337, 472
PspN4I	GGNNCC	3 cut(s)	6, 155, 370
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	104, 296, 395
SatI	GCNGC	2 cut(s)	323, 730
Sau3AI	GATC	3 cut(s)	153, 260, 574
Sau96I	GGNCC	1 cut(s)	369
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	2 cut(s)	337, 473
SduI	GDGCHC	2 cut(s)	101, 238
SetI	ASST	6 cut(s)	27, 178, 331, 620, 669, 683
SfaNI	GCATC	1 cut(s)	178
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	7 cut(s)	71, 119, 268, 363, 558, 607, 723
SsiI	CCGC	2 cut(s)	323, 730
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	114, 150, 636
TaaI	ACNGT	3 cut(s)	410, 704, 710
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	4 cut(s)	21, 76, 421, 516
TasI	AATT	7 cut(s)	71, 119, 268, 363, 558, 607, 723
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	2 cut(s)	325, 732
Tru1I	TTAA	3 cut(s)	104, 296, 395
Tru9I	TTAA	3 cut(s)	104, 296, 395
TscAI	CASTG	2 cut(s)	37, 700
TseFI	GTSAC	2 cut(s)	532, 662
Tsp45I	GTSAC	2 cut(s)	532, 662
TspDTI	ATGAA	2 cut(s)	458, 639
TspRI	CASTG	2 cut(s)	37, 700
XapI	RAATTY	3 cut(s)	71, 558, 607
XspI	CTAG	3 cut(s)	114, 150, 636
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.