Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

23946728 .. 23947829

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTTGTCGGAGAGGAGCACAAATGGCTATGCATGGATCAGCAATCGTGCCTTACCTTCCACTCGATGTAATCGCCGAAATACTTGCAAAACTTTCTGTCAAATCCTTGTTGCAATTTAGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAAGTCATCAATTTGTCAAAAAGTATTTGTCACAAGTCACCACCAGTCCTTCAAGACTAATCATGAATCCTTTTGGCTTGGTTAACGACTTGACTTTCTACCATCTTCATGATTCCATAGTAGTCTGTGAAAGTTCAATCGATTTCCGGATCGAAGAATCTGAGTACTGTGTCATGGGTTCTTGTGACGGTTTAGTATGTGTAAAAGAATGTCACCATGGTATGATCTTCCTCTGGAATCCAAGTACAAGATGCGCCAAAATATTACCTTGTACTTCCGAAGTACATGGGAAAGTGTATGAACTTGGATGGAAGTATGGATTCGGTCACGACTGCAATAGTGACGACTACAAGGTGCTAACATTGAGTCCTGAAGAAAATACTCTTGATAAGATGGAGTACTTTAGTTATAAATCCATGATGTACACATTAGGAACAGACTCTTGGAGGAGGATTCGGGATTCACCACTTGGTTGTGTGTTTGTCGACAAGTCTGCTACTTTTGTTAGTGGAGCTCTACACTGGATGGCGGATCAAGAACCAAGTCTTACTAGGGTAATTATTTCTCTTGATTTAACAAGTGAGACATACATAGAAGTGCCACAACCTGATTATGAGTATTCTTCTGAACTTGCTGAAGTCGGGGCTTCAAGAGGATGCTTATGCTTGCTTGCTTACGACAATGATGAATATTATGATATTTGGGTGATGAATGAATATGGGGTGCGAGAGTCTTGGACCAAATCGATCAAAATCCCATTTATGTGGGAATTTCTTGGCTGCTTAAAACCGCTGACATGGTTTATCGAGAACGGGGAAATTATATTGAGTATAGGTGGGAATGTGGCTTCCTACAATGCAAACAGAAACTCAGTTAGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

345

Amino Acids

39.18

Weight (kDa)

5.32

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	19 - 56	2.2e-07	F-box-like
F-box	PF00646	20 - 58	5.8e-11	F-box domain
FBA_3	PF08268	94 - 343	5.7e-24	F-box associated beta propeller domain
FBA_1	PF07734	96 - 322	3.5e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	639
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	2 cut(s)	683, 944
AclWI	GGATC	3 cut(s)	46, 311, 693
AcsI	RAATTY	1 cut(s)	923
AcuI	CTGAAG	2 cut(s)	546, 810
AfaI	GTAC	6 cut(s)	320, 400, 427, 438, 554, 578
AgsI	TTSAA	3 cut(s)	207, 291, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	1 cut(s)	668
AluI	AGCT	1 cut(s)	668
Alw21I	GWGCWC	3 cut(s)	22, 146, 670
Alw26I	GTCTC	1 cut(s)	731
AlwI	GGATC	3 cut(s)	46, 311, 693
Aor13HI	TCCGGA	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	933
ApoI	RAATTY	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	891
AsuHPI	GGTGA	4 cut(s)	184, 359, 609, 871
AvaII	GGWCC	1 cut(s)	891
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	3 cut(s)	22, 146, 670
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	4 cut(s)	264, 456, 541, 673
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 629, 663
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	2 cut(s)	705, 1036
BisI	GCNGC	1 cut(s)	934
BlsI	GCNGC	1 cut(s)	935
BmcAI	AGTACT	2 cut(s)	320, 554
Bme18I	GGWCC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	891
BmsI	GCATC	2 cut(s)	395, 800
BpuEI	CTTGAG	1 cut(s)	139
Bsa29I	ATCGAT	2 cut(s)	294, 899
BsaBI	GATNNNNATC	1 cut(s)	905
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	198, 680
Bse8I	GATNNNNATC	1 cut(s)	905
BseAI	TCCGGA	1 cut(s)	300
BseCI	ATCGAT	2 cut(s)	294, 899
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	3 cut(s)	467, 684, 815
BseJI	GATNNNNATC	1 cut(s)	905
BseMII	CTCAG	2 cut(s)	306, 1038
BseNI	ACTGG	2 cut(s)	198, 680
BseRI	GAGGAG	2 cut(s)	30, 616
BseXI	GCAGC	1 cut(s)	920
BshVI	ATCGAT	2 cut(s)	294, 899
BsiHKAI	GWGCWC	3 cut(s)	22, 146, 670
BsiSI	CCGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	731
Bsp1286I	GDGCHC	3 cut(s)	22, 146, 670
Bsp13I	TCCGGA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	38, 303, 378, 685, 900
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	2 cut(s)	683, 944
BspCNI	CTCAG	2 cut(s)	307, 1037
BspDI	ATCGAT	2 cut(s)	294, 899
BspEI	TCCGGA	1 cut(s)	300
BspHI	TCATGA	2 cut(s)	216, 262
BspPI	GGATC	3 cut(s)	46, 311, 693
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	198, 680
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	5 cut(s)	38, 303, 378, 685, 900
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	323, 344
BstAUI	TGTACA	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	821, 825
BstDEI	CTNAG	2 cut(s)	315, 1024
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	467, 684, 815
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	5 cut(s)	41, 306, 381, 688, 903
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	5 cut(s)	38, 303, 378, 685, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	918
Bsu15I	ATCGAT	2 cut(s)	294, 899
BsuTUI	ATCGAT	2 cut(s)	294, 899
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	467, 684, 815
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	821, 825
CciI	TCATGA	2 cut(s)	216, 262
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	891
ClaI	ATCGAT	2 cut(s)	294, 899
Csp6I	GTAC	6 cut(s)	319, 399, 426, 437, 553, 577
CviAII	CATG	9 cut(s)	35, 138, 217, 263, 328, 371, 440, 571, 951
CviJI	RGCY	7 cut(s)	29, 231, 668, 800, 933, 1001, 1034
CviKI_1	RGCY	7 cut(s)	29, 231, 668, 800, 933, 1001, 1034
CviQI	GTAC	6 cut(s)	319, 399, 426, 437, 553, 577
DdeI	CTNAG	2 cut(s)	315, 1024
DpnI	GATC	5 cut(s)	40, 305, 380, 687, 902
DpnII	GATC	5 cut(s)	38, 303, 378, 685, 900
EciI	GGCGGA	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	891
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	546, 810
EcoICRI	GAGCTC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	9 cut(s)	38, 141, 220, 266, 331, 374, 443, 574, 954
FatI	CATG	9 cut(s)	34, 137, 216, 262, 327, 370, 439, 570, 950
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	934
FokI	GGATG	3 cut(s)	474, 691, 822
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	934
FspBI	CTAG	2 cut(s)	705, 1036
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	1 cut(s)	934
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	9 cut(s)	38, 141, 220, 266, 331, 374, 443, 574, 954
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	2 cut(s)	238, 640
HindII	GTYRAC	2 cut(s)	238, 640
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	4 cut(s)	184, 359, 609, 871
Hpy166II	GTNNAC	3 cut(s)	238, 579, 640
Hpy188I	TCNGA	4 cut(s)	12, 316, 433, 781
Hpy8I	GTNNAC	3 cut(s)	238, 579, 640
HpyAV	CCTTC	2 cut(s)	68, 213
HpyCH4III	ACNGT	2 cut(s)	323, 344
HpyCH4V	TGCA	6 cut(s)	34, 89, 115, 132, 489, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	315, 1024
Hsp92II	CATG	9 cut(s)	38, 141, 220, 266, 331, 374, 443, 574, 954
HspAI	GCGC	1 cut(s)	408
Kpn2I	TCCGGA	1 cut(s)	300
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	38, 303, 378, 685, 900
LmnI	GCTCC	3 cut(s)	17, 149, 665
LpnPI	CCDG	6 cut(s)	211, 314, 373, 537, 661, 774
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	2 cut(s)	395, 800
MaeI	CTAG	2 cut(s)	705, 1036
MaeIII	GTNAC	6 cut(s)	183, 190, 338, 365, 479, 494
MalI	GATC	5 cut(s)	40, 305, 380, 687, 902
MboI	GATC	5 cut(s)	38, 303, 378, 685, 900
MboII	GAAGA	5 cut(s)	251, 320, 373, 539, 768
MhlI	GDGCHC	3 cut(s)	22, 146, 670
MluCI	AATT	5 cut(s)	116, 164, 711, 923, 972
MlyI	GAGTC	3 cut(s)	529, 587, 893
MnlI	CCTC	5 cut(s)	8, 395, 594, 597, 800
Mph1103I	ATGCAT	1 cut(s)	36
MroI	TCCGGA	1 cut(s)	300
MseI	TTAA	4 cut(s)	149, 237, 728, 938
MslI	CAYNNNNRTG	3 cut(s)	261, 749, 916
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	38, 303, 378, 685, 900
NlaIII	CATG	9 cut(s)	38, 141, 220, 266, 331, 374, 443, 574, 954
NmuCI	GTSAC	6 cut(s)	183, 190, 338, 365, 479, 494
NsiI	ATGCAT	1 cut(s)	36
PagI	TCATGA	2 cut(s)	216, 262
PfeI	GAWTC	7 cut(s)	220, 266, 311, 391, 474, 607, 614
PkrI	GCNGC	1 cut(s)	935
PleI	GAGTC	3 cut(s)	528, 587, 892
PpsI	GAGTC	3 cut(s)	528, 587, 892
PsiI	TTATAA	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	891
RsaI	GTAC	6 cut(s)	320, 400, 427, 438, 554, 578
RsaNI	GTAC	6 cut(s)	319, 399, 426, 437, 553, 577
RseI	CAYNNNNRTG	3 cut(s)	261, 749, 916
SacI	GAGCTC	1 cut(s)	670
SalI	GTCGAC	1 cut(s)	638
SaqAI	TTAA	4 cut(s)	149, 237, 728, 938
SatI	GCNGC	1 cut(s)	934
Sau3AI	GATC	5 cut(s)	38, 303, 378, 685, 900
Sau96I	GGNCC	1 cut(s)	891
ScaI	AGTACT	2 cut(s)	320, 554
SchI	GAGTC	3 cut(s)	529, 587, 893
SduI	GDGCHC	3 cut(s)	22, 146, 670
SetI	ASST	6 cut(s)	60, 424, 510, 670, 763, 991
SfaNI	GCATC	2 cut(s)	395, 800
SinI	GGWCC	1 cut(s)	891
SmiMI	CAYNNNNRTG	3 cut(s)	261, 749, 916
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	5 cut(s)	116, 164, 711, 923, 972
SsiI	CCGC	2 cut(s)	683, 944
SspI	AATATT	2 cut(s)	417, 845
SspMI	CTAG	2 cut(s)	705, 1036
SstI	GAGCTC	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	323, 344
TaqI	TCGA	6 cut(s)	66, 294, 306, 639, 899, 960
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	116, 164, 711, 923, 972
TatI	WGTACW	6 cut(s)	318, 398, 425, 436, 552, 576
TfiI	GAWTC	7 cut(s)	220, 266, 311, 391, 474, 607, 614
Tru1I	TTAA	4 cut(s)	149, 237, 728, 938
Tru9I	TTAA	4 cut(s)	149, 237, 728, 938
TscAI	CASTG	1 cut(s)	680
TseFI	GTSAC	6 cut(s)	183, 190, 338, 365, 479, 494
TseI	GCWGC	1 cut(s)	933
Tsp45I	GTSAC	6 cut(s)	183, 190, 338, 365, 479, 494
TspDTI	ATGAA	6 cut(s)	233, 251, 468, 855, 878, 882
TspRI	CASTG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	891
XapI	RAATTY	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	2 cut(s)	705, 1036
ZrmI	AGTACT	2 cut(s)	320, 554
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.