Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

1819219 .. 1820498

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATTTGGTTACGACTAAAATAGTGACGATTCAAGGTGCTAATGGAGCTCAGGACTCTCCTCTTGGTATCTTGTTTACTAGTAAGCATTCTGCTTTTGTTAGTGGAGCTCTACATTGGAGTGCTGCAAAAACTGACTGCATTGGAGCAATTGTTTTGTTTGATTTAACAAGTGAGACATACAAGGAACTGCCACTACCACTTCCTGATATTCGGTGTTATAAACTAGAAGTGGGGGCTTCAAGAGGTAAACTACTTGCTAGAGAAGACAATGATAGAGAGAGCTTAGTCTCACCCAATGCTTACAACCTTGGAGTGAACAAAAATTTTCGTCTCAAGATCGAAATTTGTCGAAGATCTTGGGGTCGAGACGCCACCGTGGCCGTTTATACCCTTACGAGCACCACTGAGTTGAGGCTAATTTACGCCAGGCCTTCGCTTGTAGCAGTCCTACAACGTATGTTGATTGGATTGATAGATGTCGATACGCAGCTACCTTTTGTTTATTATCTTTCATCCACGGAAGACACTGTGACTTTGTTTAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

183

Amino Acids

20.32

Weight (kDa)

7.69

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	325, 345
AcyI	GRCGYC	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	35, 243
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	50, 110, 285, 493
AluI	AGCT	4 cut(s)	50, 110, 285, 493
Alw21I	GWGCWC	3 cut(s)	52, 112, 404
Alw26I	GTCTC	4 cut(s)	170, 295, 338, 363
AoxI	GGCC	2 cut(s)	381, 431
ApeKI	GCWGC	2 cut(s)	125, 490
ApoI	RAATTY	2 cut(s)	325, 345
AsuHPI	GGTGA	1 cut(s)	285
BanII	GRGCYC	2 cut(s)	52, 112
BbsI	GAAGAC	2 cut(s)	273, 531
Bbv12I	GWGCWC	3 cut(s)	52, 112, 404
BbvI	GCAGC	2 cut(s)	112, 502
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	4 cut(s)	170, 295, 338, 363
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	3 cut(s)	81, 227, 261
BglI	GCCNNNNNGGC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	2 cut(s)	126, 491
BlsI	GCNGC	2 cut(s)	127, 492
Bme1390I	CCNGG	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	273, 531
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	310, 378, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	310, 378, 519
BseGI	GGATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	65, 399
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	112, 502
BshFI	GGCC	2 cut(s)	383, 433
BsiHKAI	GWGCWC	3 cut(s)	52, 112, 404
BsmAI	GTCTC	4 cut(s)	170, 295, 338, 363
BsmBI	CGTCTC	2 cut(s)	338, 363
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	383, 433
Bsp1286I	GDGCHC	3 cut(s)	52, 112, 404
Bsp143I	GATC	2 cut(s)	339, 356
BspANI	GGCC	2 cut(s)	383, 433
BspCNI	CTCAG	2 cut(s)	64, 400
BssECI	CCNNGG	3 cut(s)	310, 378, 519
BssMI	GATC	2 cut(s)	339, 356
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	379, 532
BstACI	GRCGYC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	51, 286, 408
BstDSI	CCRYGG	2 cut(s)	378, 519
BstF5I	GGATG	1 cut(s)	515
BstKTI	GATC	2 cut(s)	342, 359
BstMAI	GTCTC	4 cut(s)	170, 295, 338, 363
BstMBI	GATC	2 cut(s)	339, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 380
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	112, 502
BstV2I	GAAGAC	2 cut(s)	273, 531
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	383, 433
BtgI	CCRYGG	2 cut(s)	378, 519
BtsCI	GGATG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	405, 528
CseI	GACGC	1 cut(s)	380
CviJI	RGCY	8 cut(s)	50, 110, 239, 285, 383, 418, 433, 493
CviKI_1	RGCY	8 cut(s)	50, 110, 239, 285, 383, 418, 433, 493
DdeI	CTNAG	3 cut(s)	51, 286, 408
DpnI	GATC	2 cut(s)	341, 358
DpnII	GATC	2 cut(s)	339, 356
EaeI	YGGCCR	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	50, 110
Eco130I	CCWWGG	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	433
Eco24I	GRGCYC	2 cut(s)	52, 112
Eco53kI	GAGCTC	2 cut(s)	50, 110
EcoICRI	GAGCTC	2 cut(s)	50, 110
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	52, 112
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	2 cut(s)	338, 363
FaiI	YATR	4 cut(s)	181, 222, 390, 461
Fnu4HI	GCNGC	2 cut(s)	126, 491
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	2 cut(s)	52, 112
Fsp4HI	GCNGC	2 cut(s)	126, 491
FspBI	CTAG	3 cut(s)	81, 227, 261
GluI	GCNGC	2 cut(s)	126, 491
HaeIII	GGCC	2 cut(s)	383, 433
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	31, 56
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	3 cut(s)	78, 251, 319
Hpy188III	TCNNGA	5 cut(s)	53, 206, 243, 337, 368
Hpy8I	GTNNAC	3 cut(s)	78, 251, 319
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	2 cut(s)	379, 532
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	128, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 380
HpyF3I	CTNAG	3 cut(s)	51, 286, 408
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	339, 356
LmnI	GCTCC	3 cut(s)	47, 107, 146
LpnPI	CCDG	4 cut(s)	38, 219, 415, 442
Lsp1109I	GCAGC	2 cut(s)	112, 502
MaeI	CTAG	3 cut(s)	81, 227, 261
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	3 cut(s)	10, 25, 532
MalI	GATC	2 cut(s)	341, 358
MboI	GATC	2 cut(s)	339, 356
MboII	GAAGA	3 cut(s)	278, 366, 536
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	3 cut(s)	52, 112, 404
MluCI	AATT	4 cut(s)	150, 325, 345, 420
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	72, 239, 408
MseI	TTAA	2 cut(s)	167, 543
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	47, 380
NdeII	GATC	2 cut(s)	339, 356
NmuCI	GTSAC	2 cut(s)	25, 532
PceI	AGGCCT	1 cut(s)	433
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	127, 492
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	2 cut(s)	52, 112
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	52, 112
SaqAI	TTAA	2 cut(s)	167, 543
SatI	GCNGC	2 cut(s)	126, 491
Sau3AI	GATC	2 cut(s)	339, 356
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	3 cut(s)	52, 112, 404
SetI	ASST	9 cut(s)	40, 52, 112, 250, 287, 312, 460, 495, 499
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	4 cut(s)	150, 325, 345, 420
SseBI	AGGCCT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	81, 227, 261
SstI	GAGCTC	2 cut(s)	52, 112
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	379, 532
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	4 cut(s)	342, 352, 367, 483
TasI	AATT	4 cut(s)	150, 325, 345, 420
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	167, 543
Tru9I	TTAA	2 cut(s)	167, 543
TscAI	CASTG	2 cut(s)	412, 535
TseFI	GTSAC	2 cut(s)	25, 532
TseI	GCWGC	2 cut(s)	125, 490
Tsp45I	GTSAC	2 cut(s)	25, 532
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	412, 535
XapI	RAATTY	2 cut(s)	325, 345
XspI	CTAG	3 cut(s)	81, 227, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.