Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

25095391 .. 25096536

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCGCGTCACATTCCATTCGAGGTAATCACTGAAATACTTGCAAAACTTCCTGTGAAATCCTTGTTGAAATTTCGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAACTAGTCAATTCGTCAAACAACATCTATCCAGCAATCCTAGTACTCCCAAAAAAGTAATCCAGCTGAGTAGTGATGTCTTAACGTTTTACTCTCTACATGATTCCAAACTAGTCGAGGAAACCATCAAGTTCCGGATTGAATGGCATGCACTCAGTCCTTTCCGTATCATGGGTTATTGTAATGGTTTGGTATGCATAGAAGCTTGTCGTGAGAACCGGATCTTCCTCTGGAATCCAAGTACAAGAGACTCCAAAATATTACCACGTGGAGTAGTAGACAACAGTTATTTTTCTTGGTGCGGATTTGGTTATGACTACAATAGTGACGACTACAAGGTGCTAACAGTGGATCGTCTTAAAAAACCTATTGATAATTACCAAGACTCTAGTCGTAATTCTATGATGTACACATTAAGAACAAATTCTTGGAGAAGGATTCAGGATTTCCCTCTTGAAATTAGTTATATGATGGTTGATAGTTCTGCTACTCATGTAAATGGAGCTCTACATTGGATGGCGAGGAAAGGATTGAATTCGTGGGTAATCATCTCTCTTGATTTAACTACTGAGACATACATGGAAGTGCCGCAACCTGATTTTTATGGGACTCCTGTTGAGCATATTGGAATTGGGGCCTCAAGCACAGGGTGCTTATGCTTAAATGTTCACAACGCTGCTGGTTCTCAAAGTTATGATTTTTGGGTGATGAAGGAATATGGGGTGCGAGAGTCTTGGACTATATCGTTCAAAATCCCATACGTGGTTGTCGGTATACACCCAAGACCGGTGGCATGGTTTTCAGAAAATGGGAAAATTTTGTTCAATAGAGATGGAAAACTGGCCACTTACAACGCAAAAAAAAATTTAGTTAGGTATCTGCATCAAACAACTTATTGTAATTCATGTCCTCATGGTGATGTTTATGTTGAGAGCTTAGTATCACCCAATGCTTATAGTAATCGTGAAGCCAAAGAAATTAGCCGTCTCAATAATATCAATGTAGAAAGAACGACAAGAGTAGTGATGAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

381

Amino Acids

43.8

Weight (kDa)

8.87

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 40	7e-07	F-box-like
F-box	PF00646	5 - 41	5.2e-10	F-box domain
FBA_3	PF08268	64 - 289	2.1e-22	F-box associated beta propeller domain
FBA_1	PF07734	75 - 350	4.8e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	387, 883
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	2 cut(s)	411, 698
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	2 cut(s)	338, 468
AcoI	YGGCCR	1 cut(s)	951
AcsI	RAATTY	5 cut(s)	71, 532, 643, 924, 973
AcvI	CACGTG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	759
AfaI	GTAC	3 cut(s)	154, 352, 518
AfiI	CCNNNNNNNGG	3 cut(s)	280, 871, 895
AgeI	ACCGGT	1 cut(s)	895
AgsI	TTSAA	6 cut(s)	70, 251, 566, 643, 859, 934
AhlI	ACTAGT	2 cut(s)	113, 220
AjuI	GAANNNNNNNTTGG	2 cut(s)	520, 552
AluBI	AGCT	4 cut(s)	175, 314, 614, 1044
AluI	AGCT	4 cut(s)	175, 314, 614, 1044
Alw21I	GWGCWC	2 cut(s)	101, 616
Alw26I	GTCTC	3 cut(s)	351, 674, 1100
AlwI	GGATC	2 cut(s)	338, 468
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	2 cut(s)	744, 951
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	5 cut(s)	71, 532, 643, 924, 973
AsiGI	ACCGGT	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	3 cut(s)	826, 1037, 1044
BalI	TGGCCA	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	616
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	101, 616
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	4 cut(s)	242, 574, 619, 935
BceAI	ACGGC	1 cut(s)	1077
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	3 cut(s)	351, 674, 1100
BcuI	ACTAGT	2 cut(s)	113, 220
BfaI	CTAG	4 cut(s)	114, 150, 221, 498
BisI	GCNGC	2 cut(s)	698, 786
BlsI	GCNGC	2 cut(s)	699, 787
BmcAI	AGTACT	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	745
BmsI	GCATC	1 cut(s)	1000
BoxI	GACNNNNGTC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	733
BsaAI	YACGTR	2 cut(s)	377, 871
BsaWI	WCCGGW	3 cut(s)	243, 327, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 871, 895
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	1 cut(s)	954
BseAI	TCCGGA	1 cut(s)	243
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	3 cut(s)	280, 871, 895
BseMII	CTCAG	3 cut(s)	167, 277, 669
BseNI	ACTGG	1 cut(s)	954
BseXI	GCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	746, 953
BshTI	ACCGGT	1 cut(s)	895
BsiHKAI	GWGCWC	2 cut(s)	101, 616
BsiSI	CCGG	3 cut(s)	244, 328, 896
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	3 cut(s)	280, 871, 895
BsmAI	GTCTC	3 cut(s)	351, 674, 1100
BsmBI	CGTCTC	1 cut(s)	1100
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	746, 953
Bsp1286I	GDGCHC	2 cut(s)	101, 616
Bsp13I	TCCGGA	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	330, 460
BspACI	CCGC	2 cut(s)	411, 698
BspANI	GGCC	2 cut(s)	746, 953
BspCNI	CTCAG	3 cut(s)	168, 276, 670
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	338, 468
BsrFI	RCCGGY	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	954
BssAI	RCCGGY	1 cut(s)	895
BssMI	GATC	2 cut(s)	330, 460
BssNAI	GTATAC	1 cut(s)	884
Bst1107I	GTATAC	1 cut(s)	884
Bst4CI	ACNGT	2 cut(s)	395, 457
BstAPI	GCANNNNNTGC	1 cut(s)	759
BstAUI	TGTACA	1 cut(s)	516
BstBAI	YACGTR	2 cut(s)	377, 871
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	176, 263, 678, 1045
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	333, 463
BstMAI	GTCTC	3 cut(s)	351, 674, 1100
BstMBI	GATC	2 cut(s)	330, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	498
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BstZ17I	GTATAC	1 cut(s)	884
BsuRI	GGCC	2 cut(s)	746, 953
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	30, 462
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	744
Csp6I	GTAC	3 cut(s)	153, 351, 517
CspAI	ACCGGT	1 cut(s)	895
CspCI	CAANNNNNGTGG	2 cut(s)	879, 914
CviAII	CATG	9 cut(s)	93, 209, 257, 280, 602, 688, 903, 1014, 1022
CviJI	RGCY	8 cut(s)	175, 314, 614, 746, 953, 1044, 1079, 1092
CviKI_1	RGCY	8 cut(s)	175, 314, 614, 746, 953, 1044, 1079, 1092
CviQI	GTAC	3 cut(s)	153, 351, 517
DdeI	CTNAG	4 cut(s)	176, 263, 678, 1045
DpnI	GATC	2 cut(s)	332, 462
DpnII	GATC	2 cut(s)	330, 460
DraIII	CACNNNGTG	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	614
Eco72I	CACGTG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	744
EcoRI	GAATTC	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	1100
FaeI	CATG	9 cut(s)	96, 212, 260, 283, 605, 691, 906, 1017, 1025
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	9 cut(s)	92, 208, 256, 279, 601, 687, 902, 1013, 1021
FblI	GTMKAC	2 cut(s)	387, 883
Fnu4HI	GCNGC	2 cut(s)	698, 786
FokI	GGATG	1 cut(s)	637
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	2 cut(s)	698, 786
FspBI	CTAG	4 cut(s)	114, 150, 221, 498
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	698, 786
HaeIII	GGCC	2 cut(s)	746, 953
HapII	CCGG	3 cut(s)	244, 328, 896
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	9 cut(s)	96, 212, 260, 283, 605, 691, 906, 1017, 1025
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	7 cut(s)	212, 343, 359, 494, 547, 718, 839
HpaII	CCGG	3 cut(s)	244, 328, 896
HphI	GGTGA	3 cut(s)	826, 1037, 1044
Hpy166II	GTNNAC	4 cut(s)	388, 519, 778, 884
Hpy188I	TCNGA	1 cut(s)	913
Hpy188III	TCNNGA	7 cut(s)	244, 320, 340, 551, 563, 665, 1073
Hpy8I	GTNNAC	4 cut(s)	388, 519, 778, 884
HpyAV	CCTTC	2 cut(s)	537, 814
HpyCH4III	ACNGT	2 cut(s)	395, 457
HpyCH4IV	ACGT	3 cut(s)	194, 376, 870
HpyCH4V	TGCA	5 cut(s)	44, 87, 260, 306, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	4 cut(s)	176, 263, 678, 1045
HpySE526I	ACGT	3 cut(s)	194, 376, 870
Hsp92II	CATG	9 cut(s)	96, 212, 260, 283, 605, 691, 906, 1017, 1025
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	330, 460
LmnI	GCTCC	2 cut(s)	104, 611
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	4 cut(s)	114, 150, 221, 498
MaeII	ACGT	3 cut(s)	194, 376, 870
MaeIII	GTNAC	2 cut(s)	8, 434
MalI	GATC	2 cut(s)	332, 462
MboI	GATC	2 cut(s)	330, 460
MboII	GAAGA	1 cut(s)	325
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	101, 616
MlsI	TGGCCA	1 cut(s)	953
MluNI	TGGCCA	1 cut(s)	953
MlyI	GAGTC	4 cut(s)	353, 488, 712, 848
MnlI	CCTC	7 cut(s)	16, 220, 347, 570, 624, 757, 1029
Mox20I	TGGCCA	1 cut(s)	953
Mph1103I	ATGCAT	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	953
MseI	TTAA	6 cut(s)	104, 191, 468, 524, 671, 770
MslI	CAYNNNNRTG	3 cut(s)	606, 692, 1026
Msp20I	TGGCCA	1 cut(s)	953
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	3 cut(s)	244, 328, 896
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	2 cut(s)	330, 460
NlaIII	CATG	9 cut(s)	96, 212, 260, 283, 605, 691, 906, 1017, 1025
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	2 cut(s)	8, 434
NsiI	ATGCAT	1 cut(s)	308
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	212, 343, 547
PinAI	ACCGGT	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	699, 787
PleI	GAGTC	4 cut(s)	353, 488, 712, 847
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	4 cut(s)	353, 488, 712, 847
Ppu21I	YACGTR	2 cut(s)	377, 871
PshAI	GACNNNNGTC	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	616
Psp1406I	AACGTT	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	154, 352, 518
RsaNI	GTAC	3 cut(s)	153, 351, 517
RseI	CAYNNNNRTG	3 cut(s)	606, 692, 1026
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	6 cut(s)	104, 191, 468, 524, 671, 770
SatI	GCNGC	2 cut(s)	698, 786
Sau3AI	GATC	2 cut(s)	330, 460
Sau96I	GGNCC	1 cut(s)	744
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	4 cut(s)	353, 488, 712, 848
SduI	GDGCHC	2 cut(s)	101, 616
SfaNI	GCATC	1 cut(s)	1000
SmiMI	CAYNNNNRTG	3 cut(s)	606, 692, 1026
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
SpeI	ACTAGT	2 cut(s)	113, 220
SphI	GCATGC	1 cut(s)	260
SsiI	CCGC	2 cut(s)	411, 698
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	4 cut(s)	114, 150, 221, 498
SstI	GAGCTC	1 cut(s)	616
TaaI	ACNGT	2 cut(s)	395, 457
TaiI	ACGT	3 cut(s)	197, 379, 873
TaqI	TCGA	3 cut(s)	21, 76, 225
TatI	WGTACW	3 cut(s)	152, 350, 516
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	3 cut(s)	212, 343, 547
Tru1I	TTAA	6 cut(s)	104, 191, 468, 524, 671, 770
Tru9I	TTAA	6 cut(s)	104, 191, 468, 524, 671, 770
TscAI	CASTG	2 cut(s)	37, 462
TseFI	GTSAC	2 cut(s)	8, 434
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	2 cut(s)	8, 434
TspDTI	ATGAA	2 cut(s)	833, 1002
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	37, 462
XapI	RAATTY	5 cut(s)	71, 532, 643, 924, 973
XceI	RCATGY	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	387, 883
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	4 cut(s)	114, 150, 221, 498
ZrmI	AGTACT	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.