Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24616463 .. 24617665

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGATTGTTCGAAAGAAGCAAGTTTTGACGAAAAGCCAACAGAAGGATTATCAATGGCGCCTCACATTCCATTCGAGGTAATCACTGAAATACTTGCAAAACTTCCTGTGAAATCCTTGTTGAAATTTCGAGTTGTGTGCAAGTCATGGTGCTCCTTAATTTCAACTAGTCAATTCGTCAAAAAACATCTATCAAGCAATACTAGTACTCCCAAAAAAGTAATCCAGCTGAGTAGTGATGTCTTAACGTTTTACTCTCTACATGATTCCAAACTAGTCCAGGAAACTATCGAGTTCCGGATTGAAAGGCATGCACTCAGTTCTTTCCGTATCATGGGTTATTGTAATGGTTTGGTATGCATAGAAAGCACTTATCGTGAAAACCGGATCTTCCTCTGGAATCCAAGTACAAGAGACTCGAAAATATTGCCATGTGGAGTAGTAGACGATAGTTATTTTTCTTGGTGCGGATTTGGTTATGACCACAATAGTGACGACTACAAGGTGCTAACAGTGGATCGTCTTAAAAAACCTATTGATAATTACCAAGACTCTAGTCGTAATTCTATGCTGTACACATTAAGAACAAATTCTTGGAGAAGGATTCAGGATTTCCCTCTTGAAACTAGTTGTATGATGGTTGATAGTTCTGCTACTCATGTAAATGGAGCTCTACATTGGATGGCAAGGCAATCCTTGAATTCGTGGGTAATAATTTCTCTTGATTTAACTACTGAGAGATACATGGATGTGCCGCAACCTGATTTTTATGGGACTCCTGTTGAGCAAATTGGAATAGGGGCCTCAAGCACAGGGTGCTTATGCTTACATGTTCACAACGGTGCTGGTTCTCAAAGTTATGATTTTTGGGTGATGAAGGAATATGGGGTGCGAGAGTCTTGGGCTATATGGCTCAAAATCCCATACGTGGTTGTCGGTATATACCCAAGACCGGTGGCATGGTTTTCCGAAAATGGGAAAATTTTGTTCAATAGAGATGGAAAACTGGCTACTTACAACGCAAAAAAAAATTCAGTTACGTATCTGCATCAAACAACTTATCGTTATTCATGTCCTCATGGTGATGTTTATGTTGAGAGCTTAGTATCACCCAATGCTTATAGTAATCGTGAAGCCAAAGAAATTAGCCGTCTCAATAATATCAATGTAGAAAGAACGACAAGAGTAGTGATGAGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

401

Amino Acids

45.81

Weight (kDa)

8.19

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 61	3.8e-10	F-box domain
F-box-like	PF12937	22 - 58	6e-07	F-box-like
FBA_3	PF08268	82 - 299	7.8e-22	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	2 cut(s)	468, 755
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	2 cut(s)	395, 525
AcsI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	816
AfaI	GTAC	3 cut(s)	208, 409, 575
AfiI	CCNNNNNNNGG	5 cut(s)	44, 334, 928, 952, 975
AflIII	ACRYGT	1 cut(s)	829
AgeI	ACCGGT	1 cut(s)	952
AgsI	TTSAA	6 cut(s)	124, 165, 305, 623, 700, 991
AhlI	ACTAGT	4 cut(s)	167, 203, 274, 626
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AleI	CACNNNNGTG	2 cut(s)	489, 840
AluBI	AGCT	3 cut(s)	229, 671, 1101
AluI	AGCT	3 cut(s)	229, 671, 1101
Alw21I	GWGCWC	2 cut(s)	155, 673
Alw26I	GTCTC	2 cut(s)	408, 1157
AlwI	GGATC	2 cut(s)	395, 525
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	801
ApoI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
AsiGI	ACCGGT	1 cut(s)	952
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	801
AsuHPI	GGTGA	3 cut(s)	883, 1094, 1101
AsuII	TTCGAA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	673
Bbv12I	GWGCWC	2 cut(s)	155, 673
BccI	CCATC	3 cut(s)	631, 676, 992
BceAI	ACGGC	1 cut(s)	1134
BcgI	CGANNNNNNTGC	4 cut(s)	120, 154, 409, 443
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	408, 1157
BcuI	ACTAGT	4 cut(s)	167, 203, 274, 626
BfaI	CTAG	5 cut(s)	168, 204, 275, 555, 627
BfmI	CTRYAG	1 cut(s)	1199
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	2 cut(s)	60, 802
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	1057
BoxI	GACNNNNGTC	1 cut(s)	555
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	790
BsaAI	YACGTR	2 cut(s)	928, 1041
BsaHI	GRCGYC	1 cut(s)	59
BsaWI	WCCGGW	3 cut(s)	297, 384, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 334, 928, 952, 975
Bse118I	RCCGGY	1 cut(s)	952
Bse1I	ACTGG	1 cut(s)	1011
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	687, 754
BseLI	CCNNNNNNNGG	5 cut(s)	44, 334, 928, 952, 975
BseMII	CTCAG	3 cut(s)	221, 331, 726
BseNI	ACTGG	1 cut(s)	1011
BshFI	GGCC	1 cut(s)	803
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	952
BsiHKAI	GWGCWC	2 cut(s)	155, 673
BsiSI	CCGG	3 cut(s)	298, 385, 953
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	5 cut(s)	44, 334, 928, 952, 975
BsmAI	GTCTC	2 cut(s)	408, 1157
BsmBI	CGTCTC	1 cut(s)	1157
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	155, 673
Bsp13I	TCCGGA	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	387, 517
BspACI	CCGC	2 cut(s)	468, 755
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	222, 330, 727
BspEI	TCCGGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	60, 802
BspPI	GGATC	2 cut(s)	395, 525
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	952
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	1 cut(s)	952
BssMI	GATC	2 cut(s)	387, 517
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	514, 842
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	2 cut(s)	928, 1041
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	230, 317, 735, 1102
BstF5I	GGATG	2 cut(s)	687, 754
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	390, 520
BstMAI	GTCTC	2 cut(s)	408, 1157
BstMBI	GATC	2 cut(s)	387, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 816
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	314, 833
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	1199
BstSNI	TACGTA	1 cut(s)	1041
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	687, 754
BtsIMutI	CAGTG	2 cut(s)	84, 519
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	952
Cfr13I	GGNCC	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	207, 408, 574
CspAI	ACCGGT	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviQI	GTAC	3 cut(s)	207, 408, 574
DdeI	CTNAG	4 cut(s)	230, 317, 735, 1102
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	389, 519
DpnII	GATC	2 cut(s)	387, 517
DraIII	CACNNNGTG	1 cut(s)	816
Ecl136II	GAGCTC	1 cut(s)	671
Eco105I	TACGTA	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	671
EcoICRI	GAGCTC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	801
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	673
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	1157
FaqI	GGGAC	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	2 cut(s)	694, 761
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	5 cut(s)	168, 204, 275, 555, 627
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	3 cut(s)	298, 385, 953
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	8 cut(s)	266, 400, 416, 551, 604, 775, 896, 1195
HpaII	CCGG	3 cut(s)	298, 385, 953
HphI	GGTGA	3 cut(s)	883, 1094, 1101
Hpy166II	GTNNAC	3 cut(s)	445, 576, 835
Hpy188I	TCNGA	1 cut(s)	970
Hpy188III	TCNNGA	7 cut(s)	298, 377, 397, 608, 620, 722, 1130
Hpy8I	GTNNAC	3 cut(s)	445, 576, 835
HpyAV	CCTTC	3 cut(s)	38, 594, 871
HpyCH4III	ACNGT	2 cut(s)	514, 842
HpyCH4IV	ACGT	3 cut(s)	248, 927, 1040
HpyCH4V	TGCA	5 cut(s)	98, 141, 314, 360, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 816
HpyF3I	CTNAG	4 cut(s)	230, 317, 735, 1102
HpySE526I	ACGT	3 cut(s)	248, 927, 1040
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	387, 517
LmnI	GCTCC	2 cut(s)	158, 668
LweI	GCATC	1 cut(s)	1057
MaeI	CTAG	5 cut(s)	168, 204, 275, 555, 627
MaeII	ACGT	3 cut(s)	248, 927, 1040
MaeIII	GTNAC	2 cut(s)	491, 1036
MalI	GATC	2 cut(s)	389, 519
MboI	GATC	2 cut(s)	387, 517
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	155, 673
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	410, 545, 769, 905
MnlI	CCTC	6 cut(s)	70, 72, 404, 627, 814, 1086
Mph1103I	ATGCAT	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	5 cut(s)	158, 245, 525, 581, 728
MslI	CAYNNNNRTG	5 cut(s)	489, 663, 749, 840, 1083
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	3 cut(s)	298, 385, 953
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	366, 816
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	2 cut(s)	387, 517
NlaIV	GGNNCC	2 cut(s)	60, 802
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	2 cut(s)	314, 833
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	2 cut(s)	489, 840
PaeI	GCATGC	1 cut(s)	314
PciI	ACATGT	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	266, 400, 604
PfoI	TCCNGGA	1 cut(s)	279
PinAI	ACCGGT	1 cut(s)	952
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	4 cut(s)	410, 545, 769, 904
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	4 cut(s)	410, 545, 769, 904
Ppu21I	YACGTR	2 cut(s)	928, 1041
PscI	ACATGT	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	673
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	60, 802
PspPI	GGNCC	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	208, 409, 575
RsaNI	GTAC	3 cut(s)	207, 408, 574
RseI	CAYNNNNRTG	5 cut(s)	489, 663, 749, 840, 1083
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	5 cut(s)	158, 245, 525, 581, 728
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	2 cut(s)	387, 517
Sau96I	GGNCC	1 cut(s)	801
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	4 cut(s)	410, 545, 769, 905
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	155, 673
SfaNI	GCATC	1 cut(s)	1057
SfcI	CTRYAG	1 cut(s)	1199
SfoI	GGCGCC	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	5 cut(s)	489, 663, 749, 840, 1083
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SnaBI	TACGTA	1 cut(s)	1041
SpeI	ACTAGT	4 cut(s)	167, 203, 274, 626
SphI	GCATGC	1 cut(s)	314
SsiI	CCGC	2 cut(s)	468, 755
SspDI	GGCGCC	1 cut(s)	58
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	5 cut(s)	168, 204, 275, 555, 627
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	514, 842
TaiI	ACGT	3 cut(s)	251, 930, 1043
TaqI	TCGA	5 cut(s)	11, 75, 130, 291, 419
TatI	WGTACW	3 cut(s)	206, 407, 573
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	266, 400, 604
Tru1I	TTAA	5 cut(s)	158, 245, 525, 581, 728
Tru9I	TTAA	5 cut(s)	158, 245, 525, 581, 728
TscAI	CASTG	2 cut(s)	91, 519
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	890, 1059
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	91, 519
XapI	RAATTY	5 cut(s)	125, 589, 700, 981, 1030
XceI	RCATGY	2 cut(s)	314, 833
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	5 cut(s)	168, 204, 275, 555, 627
ZrmI	AGTACT	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.