Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Reverse (-)

69755034 .. 69755963

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGTTCGACTGCGACAAAAATAATAATCCCATTCATAATATCATTATGATAGAAGCAAGCATGACTAGTCCTCTACTATGCTGCTCTTTTCAAGGTTCCTATGAATTTAACTCCATCAATGTCTTCATGAAGGAATTACCTTTTTATGCTTTCAAAAATCATCAGTATTTGGAGATCGTAGGTTCTTGTGATGGTTTGGTATGTGTTCAAGCATCTGAGTGTTTTAATGTTCTCCATTCGATCTTCTTGTGGAATCCATGTACTAGAGACTACAAACGATTACCATACCTAAGACAATCGTATATGATCAAGTATGGATTTGGTTATGACTATATTAGTGACGACTACAAGGTGGTAATTACCTTATCGGATAATGGTCCTCATCGAACTAGGATCTATAAATCCATGATCTACAAATTAAGAACTAAATCTTGGAGAAGGATTGAAGACTATCGTCATGATGGTGATACTATTTCCAAGTCTGCAGTATTTGTAAGGGGAGCTCTCCATTGGTTGGTGACGACGTTAAAGTGCGGCACTACTACAGTAATTAATTCACTCGATTTAGCCTGTGAGACATACTTGGAAGTGCCAAAACCTGATTGTGGGACTTGTAAAATTAAAGAAACATGTGAAGTGCTTGGGGCTTCAAGAGGGTGCTTGTGCATACTTTTCCAGAACACGTCCTATCATCAGCATGAGATGTGGGTGATGAAGGAATATGGGGTGAGAGAGTCTTGGACCAAATCAGTCACCATCCCGTTTTGTGTGTTGGACAATACTTATAAATTTAAACCACTGACATGGTTTTCCGGTAACGGCGAAATTCTGCTGAATTCACAGAAGGGCTTTGTTACTTATGATGTAAAGAAAAATTCATTTAGAGAGCTCACTAGTCATGAGGGTAATTTCATATCTGCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

310

Amino Acids

35.86

Weight (kDa)

7.85

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	45 - 256	1.3e-26	F-box associated beta propeller domain
FBA_3	PF08268	52 - 300	2.1e-23	F-box associated beta propeller domain
Beta-prop_KIB1-4	PF03478	56 - 250	8.4e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	5 cut(s)	107, 791, 828, 838, 877
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	517, 608
AflIII	ACRYGT	2 cut(s)	632, 684
AgsI	TTSAA	5 cut(s)	95, 157, 212, 449, 654
AhlI	ACTAGT	2 cut(s)	68, 896
AjiI	CACGTC	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	2 cut(s)	506, 892
AluI	AGCT	2 cut(s)	506, 892
Alw21I	GWGCWC	2 cut(s)	508, 894
Alw26I	GTCTC	2 cut(s)	264, 572
AlwI	GGATC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	5 cut(s)	107, 791, 828, 838, 877
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	380, 744
AsuHPI	GGTGA	5 cut(s)	479, 532, 724, 742, 748
AvaII	GGWCC	2 cut(s)	380, 744
BanII	GRGCYC	2 cut(s)	508, 894
BbsI	GAAGAC	2 cut(s)	118, 456
Bbv12I	GWGCWC	2 cut(s)	508, 894
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	125, 188, 458, 767
BceAI	ACGGC	1 cut(s)	838
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	264, 572
BcuI	ACTAGT	2 cut(s)	68, 896
BfaI	CTAG	4 cut(s)	69, 267, 393, 897
BfmI	CTRYAG	2 cut(s)	486, 546
BisI	GCNGC	2 cut(s)	85, 538
BlsI	GCNGC	2 cut(s)	86, 539
Bme18I	GGWCC	2 cut(s)	380, 744
BmgBI	CACGTC	1 cut(s)	687
BmgT120I	GGNCC	2 cut(s)	380, 744
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	224
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	118, 456
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 608
BseGI	GGATG	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	517, 608
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	508, 894
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	517, 608
BsmAI	GTCTC	2 cut(s)	264, 572
BsmFI	GGGAC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	508, 894
Bsp143I	GATC	5 cut(s)	177, 243, 309, 396, 411
BspACI	CCGC	1 cut(s)	537
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	3 cut(s)	129, 460, 901
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	404
BssMI	GATC	5 cut(s)	177, 243, 309, 396, 411
Bst4CI	ACNGT	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	219, 293
BstF5I	GGATG	1 cut(s)	759
BstKTI	GATC	5 cut(s)	180, 246, 312, 399, 414
BstMAI	GTCTC	2 cut(s)	264, 572
BstMBI	GATC	5 cut(s)	177, 243, 309, 396, 411
BstNSI	RCATGY	1 cut(s)	636
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	486, 546
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	2 cut(s)	118, 456
BstX2I	RGATCY	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	800
Cac8I	GCNNGC	1 cut(s)	61
CciI	TCATGA	3 cut(s)	129, 460, 901
Cfr13I	GGNCC	2 cut(s)	380, 744
Csp6I	GTAC	1 cut(s)	264
CviJI	RGCY	5 cut(s)	506, 572, 650, 852, 892
CviKI_1	RGCY	5 cut(s)	506, 572, 650, 852, 892
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	219, 293
DpnI	GATC	5 cut(s)	179, 245, 311, 398, 413
DpnII	GATC	5 cut(s)	177, 243, 309, 396, 411
DraI	TTTAAA	1 cut(s)	796
Ecl136II	GAGCTC	2 cut(s)	506, 892
Eco24I	GRGCYC	2 cut(s)	508, 894
Eco47I	GGWCC	2 cut(s)	380, 744
Eco53kI	GAGCTC	2 cut(s)	506, 892
EcoICRI	GAGCTC	2 cut(s)	506, 892
EcoRI	GAATTC	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	508, 894
FaqI	GGGAC	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	85, 538
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	2 cut(s)	508, 894
Fsp4HI	GCNGC	2 cut(s)	85, 538
FspBI	CTAG	4 cut(s)	69, 267, 393, 897
GluI	GCNGC	2 cut(s)	85, 538
HapII	CCGG	1 cut(s)	816
HinfI	GANTC	2 cut(s)	256, 737
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	5 cut(s)	479, 532, 724, 742, 748
Hpy188I	TCNGA	2 cut(s)	220, 373
Hpy188III	TCNNGA	5 cut(s)	130, 461, 654, 679, 902
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	4 cut(s)	127, 435, 712, 841
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	2 cut(s)	527, 686
HpyCH4V	TGCA	3 cut(s)	488, 669, 923
HpyF3I	CTNAG	2 cut(s)	219, 293
HpySE526I	ACGT	2 cut(s)	527, 686
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	177, 243, 309, 396, 411
LmnI	GCTCC	1 cut(s)	503
LpnPI	CCDG	4 cut(s)	586, 615, 692, 829
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	4 cut(s)	69, 267, 393, 897
MaeII	ACGT	2 cut(s)	527, 686
MaeIII	GTNAC	5 cut(s)	341, 520, 754, 818, 856
MalI	GATC	5 cut(s)	179, 245, 311, 398, 413
MboI	GATC	5 cut(s)	177, 243, 309, 396, 411
MboII	GAAGA	3 cut(s)	118, 238, 461
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	508, 894
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	4 cut(s)	84, 393, 650, 898
MseI	TTAA	7 cut(s)	111, 228, 422, 530, 555, 624, 795
MslI	CAYNNNNRTG	4 cut(s)	220, 465, 699, 805
MspI	CCGG	1 cut(s)	816
NdeII	GATC	5 cut(s)	177, 243, 309, 396, 411
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	3 cut(s)	341, 520, 754
NspI	RCATGY	1 cut(s)	636
PagI	TCATGA	3 cut(s)	129, 460, 901
PciI	ACATGT	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	86, 539
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PscI	ACATGT	1 cut(s)	632
PshAI	GACNNNNGTC	1 cut(s)	456
PshBI	ATTAAT	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	789
Psp124BI	GAGCTC	2 cut(s)	508, 894
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	380, 744
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	4 cut(s)	220, 465, 699, 805
SacI	GAGCTC	2 cut(s)	508, 894
SaqAI	TTAA	7 cut(s)	111, 228, 422, 530, 555, 624, 795
SatI	GCNGC	2 cut(s)	85, 538
Sau3AI	GATC	5 cut(s)	177, 243, 309, 396, 411
Sau96I	GGNCC	2 cut(s)	380, 744
SchI	GAGTC	1 cut(s)	746
SduI	GDGCHC	2 cut(s)	508, 894
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	486, 546
SinI	GGWCC	2 cut(s)	380, 744
SmiMI	CAYNNNNRTG	4 cut(s)	220, 465, 699, 805
SpeI	ACTAGT	2 cut(s)	68, 896
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	4 cut(s)	69, 267, 393, 897
SstI	GAGCTC	2 cut(s)	508, 894
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	2 cut(s)	530, 689
TaqI	TCGA	4 cut(s)	9, 242, 388, 564
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	7 cut(s)	111, 228, 422, 530, 555, 624, 795
Tru9I	TTAA	7 cut(s)	111, 228, 422, 530, 555, 624, 795
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	3 cut(s)	341, 520, 754
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	3 cut(s)	341, 520, 754
TspDTI	ATGAA	7 cut(s)	26, 118, 120, 146, 731, 870, 904
TspRI	CASTG	1 cut(s)	807
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	380, 744
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	5 cut(s)	107, 791, 828, 838, 877
XceI	RCATGY	1 cut(s)	636
XspI	CTAG	4 cut(s)	69, 267, 393, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.