Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

11665996 .. 11667894

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCAAGATGACACCTGGGTAGGGTTTTGCATGGCAGACGTGTCAGGATCATCGATGGCGCCTCACATTCCATTGGAGGTAATAACTGAAATACTTGCAAAACTTCCTGTGAAATCCTTGTCGAAATTTCGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAACCAAGCAATTCGTCACGAAACATCTATCAAGCAGTGATAGCAGTAATCCCAAACGAATTATCCAGCTAAGTACTGATATTAGTGATGCTGATTTCTTAACGTTTTACTCTGTTCAAGATTCCAAGCTAGTCCAGGAAAGTTCACCAATCAAGTTCCAAATCGAAAACCCTAACTATAATCAGTATAGTGGGGCTCTTAGTTCTTTCTATATTATGGGTTATTGTGATGGTCTGGTATGCGTAAAAGCTTATACTAGTTATAACAGTCATATTTTTCTCTGGAATCCGAGTACAAGAGACTCCAAACTATTGCCATATAGGCCTGGAGTAGCCAACAATAGTGCTCGTATTTTTTGTTGCTGGGGATTTGGCTATGACTACAGTAGTGATGACTACAAGGTGCTAATGGTGTTTCCTCCAGAAGATCACGAAGATTCGAGTCGTAAATCCATGTTGTACACATTAAGAACAAATTCTTGGAGAAGCATTCAAGATTTCCCTCTTGATACTAGTTGTAGGGTGGCGGGTGATTGGTCTGCTACTCTTGTAAATGGAGCTCTACATTGGATGGCGAGGCAAGGATCCAATGGTTCATGGTCAATAATTTCTCTGGATTTGACCACTGAGACATACATGGAAGTTCCACAACCTGATTTTTGTGCGACATGCGTTGAGAGTAATGGAATAGGGGTCTCAAGCACAGGGTGCTTATGCTTAAATGTTAACAACTCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

302

Amino Acids

33.57

Weight (kDa)

5.35

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 59	1.3e-09	F-box domain
F-box-like	PF12937	22 - 57	1.7e-06	F-box-like
FBA_3	PF08268	87 - 274	6.9e-20	F-box associated beta propeller domain
FBA_1	PF07734	89 - 276	1.1e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	58
AciI	CCGC	1 cut(s)	689
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	3 cut(s)	55, 741, 754
AcsI	RAATTY	2 cut(s)	125, 637
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	870
AfaI	GTAC	3 cut(s)	238, 457, 623
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	281, 656
AhlI	ACTAGT	2 cut(s)	419, 674
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	14, 297, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AluBI	AGCT	4 cut(s)	232, 292, 413, 722
AluI	AGCT	4 cut(s)	232, 292, 413, 722
Alw21I	GWGCWC	3 cut(s)	155, 511, 724
Alw26I	GTCTC	3 cut(s)	456, 785, 862
AlwI	GGATC	3 cut(s)	55, 741, 754
AoxI	GGCC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	125, 637
Asp700I	GAANNNNTTC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	300, 704
BamHI	GGATCC	1 cut(s)	746
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	361, 724
Bbv12I	GWGCWC	3 cut(s)	155, 511, 724
BccI	CCATC	3 cut(s)	49, 386, 727
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	3 cut(s)	16, 299, 489
BcoDI	GTCTC	3 cut(s)	456, 785, 862
BcuI	ACTAGT	2 cut(s)	419, 674
BfaI	CTAG	3 cut(s)	293, 420, 675
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	484
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	16, 299, 489
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	60, 748
BmrFI	CCNGG	3 cut(s)	16, 299, 489
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	2 cut(s)	510, 567
BpuEI	CTTGAG	1 cut(s)	844
Bsa29I	ATCGAT	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	16, 299, 489
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	780
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	1 cut(s)	487
BshNI	GGYRCC	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	53
BsiHKAI	GWGCWC	3 cut(s)	155, 511, 724
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	3 cut(s)	456, 785, 862
BsmI	GAATGC	1 cut(s)	651
BsnI	GGCC	1 cut(s)	487
Bso31I	GGTCTC	1 cut(s)	862
Bsp1286I	GDGCHC	4 cut(s)	155, 361, 511, 724
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	47, 589, 746
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	781
BspDI	ATCGAT	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	60, 748
BspPI	GGATC	3 cut(s)	55, 741, 754
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	862
BsrGI	TGTACA	1 cut(s)	621
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	47, 589, 746
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	3 cut(s)	16, 299, 489
Bst4CI	ACNGT	2 cut(s)	431, 548
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	870
BstAUI	TGTACA	1 cut(s)	621
BstDEI	CTNAG	3 cut(s)	233, 362, 789
BstF5I	GGATG	1 cut(s)	738
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	3 cut(s)	50, 592, 749
BstMAI	GTCTC	3 cut(s)	456, 785, 862
BstMBI	GATC	3 cut(s)	47, 589, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 484, 870
BstNI	CCWGG	3 cut(s)	16, 299, 489
BstNSI	RCATGY	1 cut(s)	834
BstSCI	CCNGG	3 cut(s)	14, 297, 487
BstSFI	CTRYAG	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	487
BsuTUI	ATCGAT	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	738
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 786
CfoI	GCGC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	237, 456, 622
CviAII	CATG	6 cut(s)	31, 147, 616, 759, 799, 831
CviJI	RGCY	8 cut(s)	232, 292, 359, 413, 487, 497, 537, 722
CviKI_1	RGCY	8 cut(s)	232, 292, 359, 413, 487, 497, 537, 722
CviQI	GTAC	3 cut(s)	237, 456, 622
DdeI	CTNAG	3 cut(s)	233, 362, 789
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	3 cut(s)	49, 591, 748
DpnII	GATC	3 cut(s)	47, 589, 746
DraIII	CACNNNGTG	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	722
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	2 cut(s)	361, 724
Eco31I	GGTCTC	1 cut(s)	862
Eco53kI	GAGCTC	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	722
EcoRII	CCWGG	3 cut(s)	14, 297, 487
EcoT38I	GRGCYC	2 cut(s)	361, 724
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
FaeI	CATG	6 cut(s)	34, 150, 619, 762, 802, 834
FatI	CATG	6 cut(s)	30, 146, 615, 758, 798, 830
FauI	CCCGC	1 cut(s)	682
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	2 cut(s)	361, 724
FspBI	CTAG	3 cut(s)	293, 420, 675
GlaI	GCGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	2 cut(s)	510, 567
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	6 cut(s)	34, 150, 619, 762, 802, 834
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	284, 448, 464, 599, 604
HpaI	GTTAAC	1 cut(s)	889
HphI	GGTGA	2 cut(s)	300, 704
Hpy166II	GTNNAC	3 cut(s)	308, 624, 889
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	9 cut(s)	45, 181, 281, 445, 584, 593, 656, 668, 776
Hpy8I	GTNNAC	3 cut(s)	308, 624, 889
HpyCH4III	ACNGT	2 cut(s)	431, 548
HpyCH4IV	ACGT	2 cut(s)	39, 266
HpyCH4V	TGCA	4 cut(s)	4, 30, 98, 141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 484, 870
HpyF3I	CTNAG	3 cut(s)	233, 362, 789
HpySE526I	ACGT	2 cut(s)	39, 266
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	6 cut(s)	34, 150, 619, 762, 802, 834
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	3 cut(s)	47, 589, 746
LmnI	GCTCC	2 cut(s)	158, 719
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	293, 420, 675
MaeII	ACGT	2 cut(s)	39, 266
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	49, 591, 748
MboI	GATC	3 cut(s)	47, 589, 746
MboII	GAAGA	2 cut(s)	599, 608
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	4 cut(s)	155, 361, 511, 724
MluCI	AATT	5 cut(s)	125, 173, 222, 637, 768
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	458, 613
MnlI	CCTC	5 cut(s)	70, 72, 591, 675, 732
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	6 cut(s)	158, 263, 629, 881, 888, 904
MspR9I	CCNGG	3 cut(s)	16, 299, 489
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	3 cut(s)	16, 299, 489
MwoI	GCNNNNNNNGC	3 cut(s)	204, 484, 870
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	3 cut(s)	47, 589, 746
NlaIII	CATG	6 cut(s)	34, 150, 619, 762, 802, 834
NlaIV	GGNNCC	2 cut(s)	60, 748
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	834
PceI	AGGCCT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	637
PfeI	GAWTC	3 cut(s)	284, 448, 599
PfoI	TCCNGGA	1 cut(s)	297
PleI	GAGTC	2 cut(s)	458, 612
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	2 cut(s)	458, 612
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	724
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	3 cut(s)	14, 297, 487
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	3 cut(s)	14, 297, 487
PspN4I	GGNNCC	2 cut(s)	60, 748
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	3 cut(s)	238, 457, 623
RsaNI	GTAC	3 cut(s)	237, 456, 622
SacI	GAGCTC	1 cut(s)	724
SaqAI	TTAA	6 cut(s)	158, 263, 629, 881, 888, 904
Sau3AI	GATC	3 cut(s)	47, 589, 746
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	458, 613
ScrFI	CCNGG	3 cut(s)	16, 299, 489
SduI	GDGCHC	4 cut(s)	155, 361, 511, 724
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	544
SfoI	GGCGCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
SpeI	ACTAGT	2 cut(s)	419, 674
Sse9I	AATT	5 cut(s)	125, 173, 222, 637, 768
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	1 cut(s)	689
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	3 cut(s)	293, 420, 675
SstI	GAGCTC	1 cut(s)	724
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	3 cut(s)	14, 297, 487
TaaI	ACNGT	2 cut(s)	431, 548
TaiI	ACGT	2 cut(s)	42, 269
TaqI	TCGA	5 cut(s)	53, 122, 130, 327, 602
TasI	AATT	5 cut(s)	125, 173, 222, 637, 768
TatI	WGTACW	3 cut(s)	236, 455, 621
TfiI	GAWTC	3 cut(s)	284, 448, 599
Tru1I	TTAA	6 cut(s)	158, 263, 629, 881, 888, 904
Tru9I	TTAA	6 cut(s)	158, 263, 629, 881, 888, 904
TscAI	CASTG	2 cut(s)	205, 793
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	747
TspRI	CASTG	2 cut(s)	205, 793
XapI	RAATTY	2 cut(s)	125, 637
XceI	RCATGY	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	3 cut(s)	293, 420, 675
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.