Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

12345295 .. 12347154

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAAAGCATGGACTCTGTTAGAGAAGCACGTACAGGAAAGCCAAAGCACCAAGGATCATCAGCGATCCCTTACCTTCCCTCCGAGGTAACCACTGAACTACTTGCAAGACTTCCTGTCAAGTCTTTGTTAAAATTCAAAACTGTCTGCAAGTCATGGCTGTCCTTAATCTCAAGTACTGAGTTCGTCAAAAAACATGATCTAATTCACCGTGCTCGAAGTTATTACAGTAGCAGCACGAATTCCAAAAGACTGCTCATAAGTTGGGAATCTCAAGCTCTTATGTGTTACTCTCCCAAATCCAGACCGCGAGAAATTCCAATTGATATTCACATCGAGAGGTTTGATCATAGTGGCAAAAATCACCATCAAAGGGAACTCAGTTTCGACATCATAGGTTCTTGTGATGGGTTGGTATGCCTGAAAGTCGGAGATTGTTGTGTGGAAAGGGTTTTCTTGTGGAATCCATGTACAAGAGAGTGTGTTGAAGCAAAAGAACGCAATGGTGAGGATGTTAGAATTTTTTCTCTTCATCATGGATTTGGTTATGACTACAATAGTGACGACTACAAGGTGTTAAAAGTGTATCACAAAACCACAACTTGTATATCCATGATCTACACATTAAGAACAGATTCTTGGAGAAGGATTCAAGACTATCCTCGTGGTGCTTTTCCACTTGAGAAGTGTGCTACTTATGTAAATGGAGCTCTACATTGGTTGGCGAAAATAAGACAAAATGATCCATTCATTATTGCTCTCGATCTAACAAGTGAGACATACATGGAAGTCGCAGTACCTGATTATGGAACAGGTTCAAGCTTTGAAGGAGTAGGTGCTTTAGAAGGGTGCTTGTGCGTACTAGTAGATGGTAAAGAGACAGATCTATGGGTGATGAAGGAATATGGGGTGAAAGAGTCTTGGACTAAATTTCTGACAATCCCTACTAAATTTCCCACAATCCCAAGCGTGCTGCCACCTGTATATTTCTATCTTAAGACCTTAACAAACCTCATATGGTTTTTGGGAAACGATGAAATCGTATTAGACATATATACGAAAATGGTTTCATACAATGCAAAAACAAAATCAACGACGGATCTCGGAATTCCGGTATGTCTTTATGATAGGAGTCATGTCTATGTAGAAAGCCTTGTCTCACTGAGTTCTTACAATGAGCTTGGAGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

398

Amino Acids

45.31

Weight (kDa)

7.53

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	24 - 64	7.8e-06	F-box-like
F-box	PF00646	26 - 64	1e-07	F-box domain
FBA_3	PF08268	107 - 314	2.8e-18	F-box associated beta propeller domain
FBA_1	PF07734	112 - 387	1.1e-26	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	310
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	4 cut(s)	61, 64, 737, 1107
AcsI	RAATTY	7 cut(s)	134, 241, 315, 519, 929, 950, 1107
AfaI	GTAC	5 cut(s)	34, 178, 472, 798, 861
AfiI	CCNNNNNNNGG	2 cut(s)	373, 806
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	5 cut(s)	139, 488, 653, 819, 827
AhdI	GACNNNNNGTC	1 cut(s)	116
AhlI	ACTAGT	1 cut(s)	862
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AluBI	AGCT	4 cut(s)	278, 710, 822, 1180
AluI	AGCT	4 cut(s)	278, 710, 822, 1180
Alw21I	GWGCWC	2 cut(s)	217, 712
Alw26I	GTCTC	3 cut(s)	770, 872, 1162
AlwI	GGATC	4 cut(s)	61, 64, 737, 1107
AlwNI	CAGNNNCTG	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	234, 973
ApoI	RAATTY	7 cut(s)	134, 241, 315, 519, 929, 950, 1107
Asp700I	GAANNNNTTC	3 cut(s)	523, 634, 814
AsuHPI	GGTGA	5 cut(s)	200, 356, 518, 904, 922
BanII	GRGCYC	1 cut(s)	712
BarI	GAAGNNNNNNTAC	2 cut(s)	780, 812
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	217, 712
BbvI	GCAGC	2 cut(s)	246, 960
BccI	CCATC	3 cut(s)	375, 401, 863
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	770, 872, 1162
BcuI	ACTAGT	1 cut(s)	862
BfaI	CTAG	1 cut(s)	863
BfrI	CTTAAG	1 cut(s)	995
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	2 cut(s)	235, 974
BlsI	GCNGC	2 cut(s)	236, 975
BmcAI	AGTACT	1 cut(s)	178
BmeRI	GACNNNNNGTC	1 cut(s)	116
BpuEI	CTTGAG	3 cut(s)	157, 258, 701
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	52, 84
BsaWI	WCCGGW	1 cut(s)	1111
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 806
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	52, 84
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	373, 806
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	171, 394, 1154
BseXI	GCAGC	2 cut(s)	246, 960
Bsh1236I	CGCG	1 cut(s)	310
BsiHKAI	GWGCWC	2 cut(s)	217, 712
BsiSI	CCGG	1 cut(s)	1112
BslI	CCNNNNNNNGG	2 cut(s)	373, 806
BsmAI	GTCTC	3 cut(s)	770, 872, 1162
Bsp1286I	GDGCHC	2 cut(s)	217, 712
Bsp1407I	TGTACA	1 cut(s)	470
Bsp143I	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	172, 393, 1155
BspFNI	CGCG	1 cut(s)	310
BspPI	GGATC	4 cut(s)	61, 64, 737, 1107
BspTI	CTTAAG	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	52, 84
BssMI	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	145, 212, 230
Bst6I	CTCTTC	1 cut(s)	534
BstAFI	CTTAAG	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	971
BstDEI	CTNAG	3 cut(s)	180, 380, 1163
BstEII	GGTNACC	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	9 cut(s)	59, 69, 202, 349, 618, 745, 766, 886, 1102
BstMAI	GTCTC	3 cut(s)	770, 872, 1162
BstMBI	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
BstPI	GGTNACC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	246, 960
BstX2I	RGATCY	2 cut(s)	883, 1099
BstYI	RGATCY	2 cut(s)	883, 1099
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	93, 1160
Cac8I	GCNNGC	1 cut(s)	971
CaiI	CAGNNNCTG	1 cut(s)	800
Csp6I	GTAC	5 cut(s)	33, 177, 471, 797, 860
CviAII	CATG	8 cut(s)	10, 156, 197, 468, 536, 613, 784, 1136
CviJI	RGCY	7 cut(s)	43, 160, 278, 710, 822, 1152, 1180
CviKI_1	RGCY	7 cut(s)	43, 160, 278, 710, 822, 1152, 1180
CviQI	GTAC	5 cut(s)	33, 177, 471, 797, 860
DdeI	CTNAG	3 cut(s)	180, 380, 1163
DpnI	GATC	9 cut(s)	58, 68, 201, 348, 617, 744, 765, 885, 1101
DpnII	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
DriI	GACNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	534
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	712
Eco53kI	GAGCTC	1 cut(s)	710
Eco91I	GGTNACC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	88
EcoRI	GAATTC	2 cut(s)	241, 1107
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	8 cut(s)	13, 159, 200, 471, 539, 616, 787, 1139
FatI	CATG	8 cut(s)	9, 155, 196, 467, 535, 612, 783, 1135
FauNDI	CATATG	1 cut(s)	1016
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	235, 974
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	2 cut(s)	235, 974
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	2 cut(s)	235, 974
HapII	CCGG	1 cut(s)	1112
Hin1II	CATG	8 cut(s)	13, 159, 200, 471, 539, 616, 787, 1139
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	7 cut(s)	14, 269, 463, 635, 649, 917, 1132
HpaII	CCGG	1 cut(s)	1112
HphI	GGTGA	5 cut(s)	200, 356, 518, 904, 922
Hpy188I	TCNGA	4 cut(s)	85, 431, 936, 1106
Hpy188III	TCNNGA	4 cut(s)	303, 337, 653, 761
Hpy99I	CGWCG	1 cut(s)	1099
HpyAV	CCTTC	5 cut(s)	86, 639, 821, 839, 892
HpyCH4III	ACNGT	3 cut(s)	145, 212, 230
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	107, 150, 1079
HpyF3I	CTNAG	3 cut(s)	180, 380, 1163
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	8 cut(s)	13, 159, 200, 471, 539, 616, 787, 1139
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
LmnI	GCTCC	1 cut(s)	707
LpnPI	CCDG	8 cut(s)	21, 129, 316, 434, 798, 813, 993, 1125
Lsp1109I	GCAGC	2 cut(s)	246, 960
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	88, 287, 560
MalI	GATC	9 cut(s)	58, 68, 201, 348, 617, 744, 765, 885, 1101
MboI	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
MboII	GAAGA	1 cut(s)	521
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	2 cut(s)	883, 1099
MhlI	GDGCHC	2 cut(s)	217, 712
MluCI	AATT	9 cut(s)	134, 204, 241, 315, 321, 519, 929, 950, 1107
MlyI	GAGTC	3 cut(s)	8, 926, 1141
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	7 cut(s)	79, 91, 333, 502, 672, 1022, 1178
MroXI	GAANNNNTTC	3 cut(s)	523, 634, 814
MseI	TTAA	6 cut(s)	131, 167, 578, 626, 996, 1004
MslI	CAYNNNNRTG	1 cut(s)	1140
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	1 cut(s)	1112
MunI	CAATTG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	1016
NdeII	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
NlaIII	CATG	8 cut(s)	13, 159, 200, 471, 539, 616, 787, 1139
NmuCI	GTSAC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PdmI	GAANNNNTTC	3 cut(s)	523, 634, 814
PfeI	GAWTC	4 cut(s)	269, 463, 635, 649
PkrI	GCNGC	2 cut(s)	236, 975
PleI	GAGTC	3 cut(s)	8, 925, 1140
PpsI	GAGTC	3 cut(s)	8, 925, 1140
Ppu21I	YACGTR	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	712
PspEI	GGTNACC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	883, 1099
RsaI	GTAC	5 cut(s)	34, 178, 472, 798, 861
RsaNI	GTAC	5 cut(s)	33, 177, 471, 797, 860
RseI	CAYNNNNRTG	1 cut(s)	1140
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	6 cut(s)	131, 167, 578, 626, 996, 1004
SatI	GCNGC	2 cut(s)	235, 974
Sau3AI	GATC	9 cut(s)	56, 66, 199, 346, 615, 742, 763, 883, 1099
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	3 cut(s)	8, 926, 1141
SduI	GDGCHC	2 cut(s)	217, 712
SmiMI	CAYNNNNRTG	1 cut(s)	1140
SmlI	CTYRAG	4 cut(s)	172, 273, 680, 995
SmoI	CTYRAG	4 cut(s)	172, 273, 680, 995
SpeI	ACTAGT	1 cut(s)	862
Sse9I	AATT	9 cut(s)	134, 204, 241, 315, 321, 519, 929, 950, 1107
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	145, 212, 230
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	4 cut(s)	217, 336, 387, 762
TasI	AATT	9 cut(s)	134, 204, 241, 315, 321, 519, 929, 950, 1107
TatI	WGTACW	2 cut(s)	176, 470
TfiI	GAWTC	4 cut(s)	269, 463, 635, 649
Tru1I	TTAA	6 cut(s)	131, 167, 578, 626, 996, 1004
Tru9I	TTAA	6 cut(s)	131, 167, 578, 626, 996, 1004
TscAI	CASTG	2 cut(s)	100, 1167
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	2 cut(s)	234, 973
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	521, 739, 911, 1050, 1059
TspGWI	ACGGA	1 cut(s)	1112
TspRI	CASTG	2 cut(s)	100, 1167
Vha464I	CTTAAG	1 cut(s)	995
XapI	RAATTY	7 cut(s)	134, 241, 315, 519, 929, 950, 1107
XmnI	GAANNNNTTC	3 cut(s)	523, 634, 814
XspI	CTAG	1 cut(s)	863
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.