Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

24581417 .. 24583402

Gene Structure 1986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGGTGAAAGAAGTTCTCAGACCTGTGAAAGTCAAATGTTACTGCAAGACCAATTTACTTCACGTGAAAGTGAAGGATCAGACTGTAATTGATGCAAAGAATAACCAATTAACAGCTGGAAGGGTTAGAAGATTCGAGTACCCACTCAATCTAACGCATGGGTTGTCGGAGAGGAGCACAAATGGAGAAGCCAATGCATGGATCAGCAATCGTGCCTACCTTCCACTCGATGTAATCGCCGAAATACTTGCAAAACTTTCTGTCAAATCCTTGTTGCAATTTAGAGTTGTGTGCAAGTCATGGTGCTGCTTAATCTCAAGTCATCAATTTGTCAAAAAGTATTTGTCAAAAGTCACCACCAGTCCTTCAAGACTAATCATGAATCCTTTTGGCTTGGTTAACGACTTGACTTTCTACCATCTTCATGATTCCATAGTAGTCCGTGAAAGTTCAATCGATTTCCGGATCGAAGAATCTGAGTACTGTGTCATGGGTTCTTGTGACGGTTTAGAACAGATCGACTCTTGGAGGAGGATTCGGGATTCACCACTTGGTTGTGTGTTTATCGACAAGTCTGCTACTTTTGTAAGTGGAGCTCTACATTGGATGGCGGATCAAGAACCAAGTTTTACTAGGGTAATTATTTCTCTTGATTTAACAAGTGAGACATACATAGAAGTGCCACAACCTGATTATGAGTATTCTTCTGAACTTGCTGAAGTGGGGGCTTCAAGAGGGTGCTTATGCTTGCTTGCTTACGACAATGATGAATATTGTGATATTTGGGTGATGAATGAATATGGGGTGCGAGACTCTTGGACCAAATCCATCAAAATCCCATTTATGTGGGAAAATAAATATTTTCTTGGCTGCTTAAAACCGCTGACAGGTTTATCGAGAACGGGGAAATTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

307

Amino Acids

35.05

Weight (kDa)

7.48

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	74 - 111	9e-07	F-box-like
F-box	PF00646	75 - 113	6.5e-10	F-box domain
FBA_3	PF08268	175 - 286	1e-05	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	2 cut(s)	614, 884
AclWI	GGATC	4 cut(s)	87, 212, 476, 624
AcuI	CTGAAG	1 cut(s)	741
AcvI	CACGTG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	143, 485
AfiI	CCNNNNNNNGG	2 cut(s)	201, 890
AgsI	TTSAA	3 cut(s)	372, 456, 735
AluBI	AGCT	2 cut(s)	119, 599
AluI	AGCT	2 cut(s)	119, 599
Alw21I	GWGCWC	2 cut(s)	182, 601
Alw26I	GTCTC	2 cut(s)	662, 807
AlwI	GGATC	4 cut(s)	87, 212, 476, 624
Aor13HI	TCCGGA	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	309, 873
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	4 cut(s)	19, 349, 540, 802
AvaII	GGWCC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	601
BbrPI	CACGTG	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	182, 601
BbvI	GCAGC	2 cut(s)	296, 860
BccI	CCATC	3 cut(s)	429, 604, 839
BcgI	CGANNNNNNTGC	4 cut(s)	233, 267, 560, 594
BcoDI	GTCTC	2 cut(s)	662, 807
BfaI	CTAG	1 cut(s)	636
BisI	GCNGC	2 cut(s)	310, 874
BlsI	GCNGC	2 cut(s)	311, 875
BmcAI	AGTACT	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 890
Bse1I	ACTGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	459
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	201, 890
BseMII	CTCAG	2 cut(s)	34, 471
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	190, 547
BseXI	GCAGC	2 cut(s)	296, 860
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	182, 601
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	201, 890
BsmAI	GTCTC	2 cut(s)	662, 807
Bsp1286I	GDGCHC	2 cut(s)	182, 601
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	5 cut(s)	79, 204, 468, 519, 616
BspACI	CCGC	2 cut(s)	614, 884
BspCNI	CTCAG	2 cut(s)	33, 472
BspDI	ATCGAT	1 cut(s)	459
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	381, 427
BspPI	GGATC	4 cut(s)	87, 212, 476, 624
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	5 cut(s)	79, 204, 468, 519, 616
Bst4CI	ACNGT	3 cut(s)	88, 488, 509
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	752, 756
BstDEI	CTNAG	2 cut(s)	20, 480
BstF5I	GGATG	1 cut(s)	615
BstKTI	GATC	5 cut(s)	82, 207, 471, 522, 619
BstMAI	GTCTC	2 cut(s)	662, 807
BstMBI	GATC	5 cut(s)	79, 204, 468, 519, 616
BstV1I	GCAGC	2 cut(s)	296, 860
BstXI	CCANNNNNNTGG	1 cut(s)	849
Bsu15I	ATCGAT	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	752, 756
CciI	TCATGA	2 cut(s)	381, 427
Cfr13I	GGNCC	1 cut(s)	822
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	142, 484
CviAII	CATG	6 cut(s)	161, 201, 303, 382, 428, 493
CviJI	RGCY	6 cut(s)	119, 194, 396, 599, 731, 873
CviKI_1	RGCY	6 cut(s)	119, 194, 396, 599, 731, 873
CviQI	GTAC	2 cut(s)	142, 484
DdeI	CTNAG	2 cut(s)	20, 480
DpnI	GATC	5 cut(s)	81, 206, 470, 521, 618
DpnII	GATC	5 cut(s)	79, 204, 468, 519, 616
EciI	GGCGGA	1 cut(s)	629
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	741
Eco72I	CACGTG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	6 cut(s)	164, 204, 306, 385, 431, 496
FatI	CATG	6 cut(s)	160, 200, 302, 381, 427, 492
Fnu4HI	GCNGC	2 cut(s)	310, 874
FokI	GGATG	1 cut(s)	622
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	2 cut(s)	310, 874
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	2 cut(s)	310, 874
HapII	CCGG	1 cut(s)	466
Hin1II	CATG	6 cut(s)	164, 204, 306, 385, 431, 496
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	8 cut(s)	135, 385, 431, 476, 524, 538, 545, 815
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	4 cut(s)	19, 349, 540, 802
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	5 cut(s)	23, 84, 172, 481, 712
Hpy188III	TCNNGA	9 cut(s)	372, 382, 428, 466, 542, 620, 653, 735, 900
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	4 cut(s)	70, 117, 233, 378
HpyCH4III	ACNGT	3 cut(s)	88, 488, 509
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	6 cut(s)	48, 98, 200, 254, 280, 297
HpyF3I	CTNAG	2 cut(s)	20, 480
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	164, 204, 306, 385, 431, 496
Kpn2I	TCCGGA	1 cut(s)	465
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	79, 204, 468, 519, 616
LmnI	GCTCC	2 cut(s)	177, 596
LpnPI	CCDG	6 cut(s)	39, 105, 376, 479, 705, 876
Lsp1109I	GCAGC	2 cut(s)	296, 860
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	41, 355, 503
MalI	GATC	5 cut(s)	81, 206, 470, 521, 618
MboI	GATC	5 cut(s)	79, 204, 468, 519, 616
MboII	GAAGA	4 cut(s)	144, 416, 485, 699
MhlI	GDGCHC	2 cut(s)	182, 601
MluCI	AATT	7 cut(s)	55, 90, 110, 281, 329, 642, 911
MlyI	GAGTC	2 cut(s)	518, 809
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	168, 525, 528, 731
Mph1103I	ATGCAT	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	5 cut(s)	113, 314, 402, 659, 878
MslI	CAYNNNNRTG	3 cut(s)	426, 680, 847
MspA1I	CMGCKG	2 cut(s)	119, 886
MspI	CCGG	1 cut(s)	466
NdeII	GATC	5 cut(s)	79, 204, 468, 519, 616
NlaIII	CATG	6 cut(s)	164, 204, 306, 385, 431, 496
NmuCI	GTSAC	2 cut(s)	355, 503
NsiI	ATGCAT	1 cut(s)	202
PagI	TCATGA	2 cut(s)	381, 427
PfeI	GAWTC	6 cut(s)	135, 385, 431, 476, 538, 545
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	311, 875
PleI	GAGTC	2 cut(s)	518, 809
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	518, 809
Ppu21I	YACGTR	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	601
PspCI	CACGTG	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	143, 485
RsaNI	GTAC	2 cut(s)	142, 484
RseI	CAYNNNNRTG	3 cut(s)	426, 680, 847
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	5 cut(s)	113, 314, 402, 659, 878
SatI	GCNGC	2 cut(s)	310, 874
Sau3AI	GATC	5 cut(s)	79, 204, 468, 519, 616
Sau96I	GGNCC	1 cut(s)	822
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	2 cut(s)	518, 809
SduI	GDGCHC	2 cut(s)	182, 601
SetI	ASST	8 cut(s)	9, 28, 69, 121, 225, 601, 694, 895
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	3 cut(s)	426, 680, 847
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	7 cut(s)	55, 90, 110, 281, 329, 642, 911
SsiI	CCGC	2 cut(s)	614, 884
SspI	AATATT	2 cut(s)	776, 863
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	88, 488, 509
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	7 cut(s)	138, 231, 459, 471, 522, 570, 899
TasI	AATT	7 cut(s)	55, 90, 110, 281, 329, 642, 911
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	6 cut(s)	135, 385, 431, 476, 538, 545
Tru1I	TTAA	5 cut(s)	113, 314, 402, 659, 878
Tru9I	TTAA	5 cut(s)	113, 314, 402, 659, 878
TseFI	GTSAC	2 cut(s)	355, 503
TseI	GCWGC	2 cut(s)	309, 873
Tsp45I	GTSAC	2 cut(s)	355, 503
TspDTI	ATGAA	6 cut(s)	17, 398, 416, 786, 809, 813
TspGWI	ACGGA	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	822
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	636
ZrmI	AGTACT	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.