Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006302

Physical Location & Seq

Genomic Coordinates Forward (+)

24054134 .. 24055159

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGTTGTCGGAGAGGAGCACAAATGGAGAAGCCAATGCATGGATCAGCAATCGTGCCTTACCTTCCACTCGATGTAATCGCCGAAATACTTGCAAAACTTTCTGTCAAATCCTTGTTGCAATTTAGAGTTGTGTGCAAGTCATGGTGCTCCTTAATCTCAAGTCATCAATTTGTCAAAAAGTATTTGTCACAAGTCACCACCAGTCCTTCAAGACTAAGCATGAATCCTTTTGGCTTGGTTAACGACTTGACTTTCTACCATCTTCATGATTCCATAGTAGTCTGTGAAAGTTCAATCGATTTCCGGATCGAAGAATCTGAGTACTGTGTCATGGGTTCTTGTGACGGTTTAGTATGTGTAAAAGAATGTCACCATGGTATGATCTTCCTCTGGAATCCAAGAACAAGATGCGCCAAAATATTACCTTGTACTTCCGAAGTACATGGGAAAGTGTATGAACTTGGATGGAAGTATGGATTCGGTCACGACTGCAATAGTGACGACTACAAGGTGCTAACATTGAGTCCTGAAGAAAATACTCTTCATAAGATGGAGTACTTTAGTTATAAATCCATGATGTACACATTAGGAACAGACTCTTGGAGGAGGATTCGGGATTCACCACTTGGTTGTGTGTTTGTCGACAAGTCTGCTACTTTTGTTAGTGGAGCTCTACACTGGATGGCGGATCAAGAACCAAGTCTTACTAGGGTAATTATTTCTCTTGATTTAACAAGTGAGACATACATAGAAGTGCCACAACCTGATTATGAGTATTCTTCTGAACTTGCTGAAGTGGGGGCTTCAAGAGGATGCTTATGCTTGCTTGCTTACGACAATGATGAATATTATGATATTTGGGTGATGAATGAATATGGGGTGCGAGAGTCTTGGACCAAATCGATCAAAATCCCATTTATGTGGGAATTTCTTGGCTGCTTAAAACCGCTGACATGGTATGTGTTTGGCAGCTCTGGCTCGGCATTTCCCACATGCGTCATCTGCTTTACATATGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

341

Amino Acids

38.82

Weight (kDa)

5.59

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	21 - 58	2.2e-07	F-box-like
F-box	PF00646	22 - 60	5.7e-11	F-box domain
FBA_3	PF08268	96 - 310	6.2e-21	F-box associated beta propeller domain
FBA_1	PF07734	98 - 304	2.3e-22	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23880
fragaria_vesca	FvH4_3g02101 FvH4_3g18092 FvH4_3g18231 FvH4_3g19151
rosa_chinensis	RchiOBHm_Chr2g0155951 RchiOBHm_Chr5g0030201 RchiOBHm_Chr5g0030271 RchiOBHm_Chr5g0030361 RchiOBHm_Chr5g0030461 RchiOBHm_Chr5g0030551
rosa_laevigata	RLG00000020877 RLG00000031085 RLG00000033219 RLG00000033225 RLG00000033227 RLG00000033371
rosa_multiflora	Rmu_sc0001886.1_g000005 Rmu_sc0013101.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049740 Rroxscaffold_1G00049760
rosa_samantha	Rh2BG513000 Rh2DG524600 Rh5AG026200 Rh5BG027400 Rh5CG029000
rosa_wichuraiana	Rw5G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	2 cut(s)	689, 950
AclWI	GGATC	3 cut(s)	52, 317, 699
AcsI	RAATTY	1 cut(s)	929
AcuI	CTGAAG	2 cut(s)	552, 816
AfaI	GTAC	5 cut(s)	326, 433, 444, 560, 584
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	213, 297, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AluBI	AGCT	2 cut(s)	674, 975
AluI	AGCT	2 cut(s)	674, 975
Alw21I	GWGCWC	3 cut(s)	22, 152, 676
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	3 cut(s)	52, 317, 699
Aor13HI	TCCGGA	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	939, 972
ApoI	RAATTY	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	897
AsuHPI	GGTGA	4 cut(s)	190, 365, 615, 877
AvaII	GGWCC	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	3 cut(s)	22, 152, 676
BbvI	GCAGC	2 cut(s)	926, 984
BccI	CCATC	4 cut(s)	270, 462, 547, 679
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 635, 669
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	711
BisI	GCNGC	2 cut(s)	940, 973
BlsI	GCNGC	2 cut(s)	941, 974
BmcAI	AGTACT	2 cut(s)	326, 560
Bme18I	GGWCC	1 cut(s)	897
BmgT120I	GGNCC	1 cut(s)	897
BmsI	GCATC	2 cut(s)	401, 806
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	300, 905
BsaBI	GATNNNNATC	1 cut(s)	911
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	204, 686
Bse8I	GATNNNNATC	1 cut(s)	911
BseAI	TCCGGA	1 cut(s)	306
BseCI	ATCGAT	2 cut(s)	300, 905
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	3 cut(s)	473, 690, 821
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	204, 686
BseRI	GAGGAG	2 cut(s)	30, 622
BseXI	GCAGC	2 cut(s)	926, 984
BshVI	ATCGAT	2 cut(s)	300, 905
BsiHKAI	GWGCWC	3 cut(s)	22, 152, 676
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	22, 152, 676
Bsp13I	TCCGGA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	44, 309, 384, 691, 906
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	2 cut(s)	689, 950
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	2 cut(s)	300, 905
BspEI	TCCGGA	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	268
BspPI	GGATC	3 cut(s)	52, 317, 699
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	204, 686
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	5 cut(s)	44, 309, 384, 691, 906
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	329, 350
Bst6I	CTCTTC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	827, 831
BstDEI	CTNAG	2 cut(s)	218, 321
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	473, 690, 821
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	5 cut(s)	47, 312, 387, 694, 909
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	5 cut(s)	44, 309, 384, 691, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	978, 1005
BstNSI	RCATGY	1 cut(s)	999
BstV1I	GCAGC	2 cut(s)	926, 984
BstXI	CCANNNNNNTGG	1 cut(s)	924
Bsu15I	ATCGAT	2 cut(s)	300, 905
BsuTUI	ATCGAT	2 cut(s)	300, 905
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	473, 690, 821
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	827, 831
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	897
ClaI	ATCGAT	2 cut(s)	300, 905
CseI	GACGC	1 cut(s)	988
Csp6I	GTAC	5 cut(s)	325, 432, 443, 559, 583
CviJI	RGCY	8 cut(s)	34, 237, 674, 806, 939, 975, 981, 1023
CviKI_1	RGCY	8 cut(s)	34, 237, 674, 806, 939, 975, 981, 1023
CviQI	GTAC	5 cut(s)	325, 432, 443, 559, 583
DdeI	CTNAG	2 cut(s)	218, 321
DpnI	GATC	5 cut(s)	46, 311, 386, 693, 908
DpnII	GATC	5 cut(s)	44, 309, 384, 691, 906
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	897
Eco53kI	GAGCTC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	552, 816
EcoICRI	GAGCTC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	1015
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	2 cut(s)	940, 973
FokI	GGATG	3 cut(s)	480, 697, 828
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	2 cut(s)	940, 973
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	2 cut(s)	940, 973
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	988
HhaI	GCGC	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	2 cut(s)	244, 646
HindII	GTYRAC	2 cut(s)	244, 646
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	4 cut(s)	190, 365, 615, 877
Hpy166II	GTNNAC	3 cut(s)	244, 585, 646
Hpy188I	TCNGA	4 cut(s)	12, 322, 439, 787
Hpy8I	GTNNAC	3 cut(s)	244, 585, 646
HpyAV	CCTTC	2 cut(s)	74, 219
HpyCH4III	ACNGT	2 cut(s)	329, 350
HpyCH4V	TGCA	5 cut(s)	40, 95, 121, 138, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	978, 1005
HpyF3I	CTNAG	2 cut(s)	218, 321
HspAI	GCGC	1 cut(s)	414
Kpn2I	TCCGGA	1 cut(s)	306
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	44, 309, 384, 691, 906
LmnI	GCTCC	3 cut(s)	17, 155, 671
LpnPI	CCDG	7 cut(s)	217, 320, 379, 543, 667, 780, 963
Lsp1109I	GCAGC	2 cut(s)	926, 984
LweI	GCATC	2 cut(s)	401, 806
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	6 cut(s)	189, 196, 344, 371, 485, 500
MalI	GATC	5 cut(s)	46, 311, 386, 693, 908
MboI	GATC	5 cut(s)	44, 309, 384, 691, 906
MboII	GAAGA	6 cut(s)	257, 326, 379, 536, 545, 774
MhlI	GDGCHC	3 cut(s)	22, 152, 676
MluCI	AATT	4 cut(s)	122, 170, 717, 929
MlyI	GAGTC	3 cut(s)	535, 593, 899
MnlI	CCTC	6 cut(s)	8, 401, 600, 603, 806, 1013
Mph1103I	ATGCAT	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	4 cut(s)	155, 243, 734, 944
MslI	CAYNNNNRTG	3 cut(s)	267, 755, 922
MspA1I	CMGCKG	1 cut(s)	952
MspI	CCGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	978, 1005
NcoI	CCATGG	1 cut(s)	376
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	5 cut(s)	44, 309, 384, 691, 906
NmeAIII	GCCGAG	1 cut(s)	962
NmuCI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
NsiI	ATGCAT	1 cut(s)	42
NspI	RCATGY	1 cut(s)	999
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	941, 974
PleI	GAGTC	3 cut(s)	534, 593, 898
PpsI	GAGTC	3 cut(s)	534, 593, 898
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	897
RsaI	GTAC	5 cut(s)	326, 433, 444, 560, 584
RsaNI	GTAC	5 cut(s)	325, 432, 443, 559, 583
RseI	CAYNNNNRTG	3 cut(s)	267, 755, 922
SacI	GAGCTC	1 cut(s)	676
SalI	GTCGAC	1 cut(s)	644
SaqAI	TTAA	4 cut(s)	155, 243, 734, 944
SatI	GCNGC	2 cut(s)	940, 973
Sau3AI	GATC	5 cut(s)	44, 309, 384, 691, 906
Sau96I	GGNCC	1 cut(s)	897
ScaI	AGTACT	2 cut(s)	326, 560
SduI	GDGCHC	3 cut(s)	22, 152, 676
SetI	ASST	6 cut(s)	66, 430, 516, 676, 769, 977
SfaNI	GCATC	2 cut(s)	401, 806
SinI	GGWCC	1 cut(s)	897
SmiMI	CAYNNNNRTG	3 cut(s)	267, 755, 922
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	4 cut(s)	122, 170, 717, 929
SsiI	CCGC	2 cut(s)	689, 950
SspI	AATATT	2 cut(s)	423, 851
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	329, 350
TaqI	TCGA	5 cut(s)	72, 300, 312, 645, 905
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	4 cut(s)	122, 170, 717, 929
TatI	WGTACW	5 cut(s)	324, 431, 442, 558, 582
TfiI	GAWTC	7 cut(s)	226, 272, 317, 397, 480, 613, 620
Tru1I	TTAA	4 cut(s)	155, 243, 734, 944
Tru9I	TTAA	4 cut(s)	155, 243, 734, 944
TscAI	CASTG	1 cut(s)	686
TseFI	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
TseI	GCWGC	2 cut(s)	939, 972
Tsp45I	GTSAC	6 cut(s)	189, 196, 344, 371, 485, 500
TspDTI	ATGAA	7 cut(s)	239, 257, 474, 536, 861, 884, 888
TspRI	CASTG	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	897
XapI	RAATTY	1 cut(s)	929
XceI	RCATGY	1 cut(s)	999
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	1 cut(s)	711
ZrmI	AGTACT	2 cut(s)	326, 560
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.